Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_N08
         (935 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0162 - 1394980-1395760,1396024-1396037                           29   7.0  
01_01_0159 + 1380421-1381143                                           29   7.0  
10_03_0021 + 7129786-7130117,7130227-7130347,7131048-7131136,713...    28   9.3  
04_01_0080 - 889548-889892                                             28   9.3  

>01_01_0162 - 1394980-1395760,1396024-1396037
          Length = 264

 Score = 28.7 bits (61), Expect = 7.0
 Identities = 16/51 (31%), Positives = 19/51 (37%), Gaps = 5/51 (9%)
 Frame = +2

Query: 152 RKCPKGEHSVLY-----CPQMAEPDCENPEVHDFVDHVGPCDVPQCFCDRP 289
           R+C   +H +LY     CP  A         HD   H   C    CFC  P
Sbjct: 33  RRCVAVDH-ILYAITVPCPNAAHGCAARTPYHDSHGHAAGCPHAPCFCPEP 82


>01_01_0159 + 1380421-1381143
          Length = 240

 Score = 28.7 bits (61), Expect = 7.0
 Identities = 16/51 (31%), Positives = 19/51 (37%), Gaps = 5/51 (9%)
 Frame = +2

Query: 152 RKCPKGEHSVLY-----CPQMAEPDCENPEVHDFVDHVGPCDVPQCFCDRP 289
           R+C   +H +LY     CP  A         HD   H   C    CFC  P
Sbjct: 9   RRCVAVDH-ILYAITVPCPNAAHGCAARTPYHDSHGHAAGCPHAPCFCPEP 58


>10_03_0021 +
           7129786-7130117,7130227-7130347,7131048-7131136,
           7131375-7131459,7131609-7131771,7132861-7132937,
           7133016-7133160,7133236-7133537,7133615-7133720,
           7134781-7134935,7135556-7135712,7135799-7135891,
           7136232-7136359,7136439-7136696,7136855-7137145,
           7137235-7137318,7138335-7138468,7138557-7138784,
           7139778-7139958,7140021-7140108,7140268-7140434,
           7140750-7141012,7141117-7141120
          Length = 1216

 Score = 28.3 bits (60), Expect = 9.3
 Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = +3

Query: 189 ALKWPSRTVRIPKSTISLTTWAHATYHSASATGLMS-GTRKL 311
           A   P+  +RIP S I    W+   Y++ S +G M+ GT  L
Sbjct: 498 AFSLPNWILRIPYSFIEAVVWSCVVYYTVSVSGNMTVGTNIL 539


>04_01_0080 - 889548-889892
          Length = 114

 Score = 28.3 bits (60), Expect = 9.3
 Identities = 6/20 (30%), Positives = 16/20 (80%)
 Frame = -1

Query: 359 IDLHNFINIQIPVHICQFSC 300
           +D+H+++N+ + + +C+F C
Sbjct: 84  VDIHDYLNLALHMQLCRFGC 103


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,642,216
Number of Sequences: 37544
Number of extensions: 317732
Number of successful extensions: 766
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 743
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 766
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2682675460
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)