Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_N08
         (935 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U50311-12|AAA92315.1|  169|Caenorhabditis elegans Hypothetical p...    38   0.008
U42830-3|AAC48275.1|  195|Caenorhabditis elegans Hypothetical pr...    33   0.22 
Z81573-3|CAB04624.3|  398|Caenorhabditis elegans Hypothetical pr...    32   0.68 
M25477-1|AAA27991.1|  329|Caenorhabditis elegans collagen protein.     32   0.68 
U21308-10|AAN65281.1|  329|Caenorhabditis elegans Roller: helica...    31   1.6  
Z70212-9|CAA94168.1|  491|Caenorhabditis elegans Hypothetical pr...    30   2.1  
Z50742-6|CAA90619.1|  491|Caenorhabditis elegans Hypothetical pr...    30   2.1  
Z68219-2|CAA92476.1|  300|Caenorhabditis elegans Hypothetical pr...    29   3.6  
Z83232-3|CAE46672.1|  381|Caenorhabditis elegans Hypothetical pr...    29   6.3  
Z83232-2|CAB05754.2|  420|Caenorhabditis elegans Hypothetical pr...    29   6.3  
U41557-6|AAA83307.1|  589|Caenorhabditis elegans Collagen sequen...    29   6.3  
U07628-1|AAA17738.1|  515|Caenorhabditis elegans APX-1 protein.        28   8.3  
AF101319-2|AAC69353.4|  515|Caenorhabditis elegans Anterior phar...    28   8.3  

>U50311-12|AAA92315.1|  169|Caenorhabditis elegans Hypothetical
           protein C25E10.10 protein.
          Length = 169

 Score = 38.3 bits (85), Expect = 0.008
 Identities = 25/67 (37%), Positives = 34/67 (50%), Gaps = 3/67 (4%)
 Frame = +2

Query: 146 PTRKCP-KGEHSVLYCPQMAEPDC--ENPEVHDFVDHVGPCDVPQCFCDRPNVRNTKTGK 316
           P RK   +G+  +  C    EP C  ENPE  D V     C    C C +  VR++ TGK
Sbjct: 71  PIRKPECEGDEELKACGSACEPTCDNENPEC-DLV-----CMTNVCQCKKGLVRDSATGK 124

Query: 317 CVPESEC 337
           CV +++C
Sbjct: 125 CVEKNKC 131


>U42830-3|AAC48275.1|  195|Caenorhabditis elegans Hypothetical
           protein C53B7.2 protein.
          Length = 195

 Score = 33.5 bits (73), Expect = 0.22
 Identities = 17/50 (34%), Positives = 23/50 (46%)
 Frame = +2

Query: 188 CPQMAEPDCENPEVHDFVDHVGPCDVPQCFCDRPNVRNTKTGKCVPESEC 337
           C QM  P CE+P     VD    C  P C C  P    + + +C+P + C
Sbjct: 38  CTQMCPPTCESPNPQCRVD----CTRPSCTC-LPGHVYSNSRQCIPANSC 82


>Z81573-3|CAB04624.3|  398|Caenorhabditis elegans Hypothetical
           protein M02G9.2 protein.
          Length = 398

 Score = 31.9 bits (69), Expect = 0.68
 Identities = 25/89 (28%), Positives = 37/89 (41%), Gaps = 1/89 (1%)
 Frame = +2

Query: 92  IVLLFVVAAVGYVTGQHFPTR-KCPKGEHSVLYCPQMAEPDCENPEVHDFVDHVGPCDVP 268
           +V  FV+A+V  +  +       C  GE     C  M  P+    ++   +    P   P
Sbjct: 7   LVAFFVIASVQAIPQRTKRQNCDCTPGEAPKCGCQVMPTPEIGGGQM---ICTCSPPVPP 63

Query: 269 QCFCDRPNVRNTKTGKCVPESEC**NCVN 355
           +C C   NVRN  TG  +P      NCV+
Sbjct: 64  KCVCTEGNVRNIITGPSLPALFKPYNCVS 92


>M25477-1|AAA27991.1|  329|Caenorhabditis elegans collagen protein.
          Length = 329

 Score = 31.9 bits (69), Expect = 0.68
 Identities = 19/69 (27%), Positives = 20/69 (28%)
 Frame = -3

Query: 888 GXPXSWGKXXXPPXGGXXXXXXXRXXPGXXGXXGGXXXXGXPXXKGPXXXXPXPXGXXDX 709
           G P   G    PP  G          PG  G  G     G P  +G     P P G    
Sbjct: 201 GPPGPKGSPGEPPQDGKSGDDGMAGQPGPIGRPGRDGMKGAPGARGRLIPVPGPQGAPGK 260

Query: 708 XKXEKPPTP 682
                PP P
Sbjct: 261 PGPIGPPGP 269


>U21308-10|AAN65281.1|  329|Caenorhabditis elegans Roller: helically
           twisted, animalsroll when moving protein 8, isoform a
           protein.
          Length = 329

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 19/69 (27%), Positives = 19/69 (27%)
 Frame = -3

Query: 888 GXPXSWGKXXXPPXGGXXXXXXXRXXPGXXGXXGGXXXXGXPXXKGPXXXXPXPXGXXDX 709
           G P   G    PP  G          PG  G  G     G P   G     P P G    
Sbjct: 201 GPPGPKGSPGEPPQDGKSGDDGMAGQPGPIGRPGRDGMKGAPGAAGRLIPVPGPQGAPGK 260

Query: 708 XKXEKPPTP 682
                PP P
Sbjct: 261 PGPIGPPGP 269


>Z70212-9|CAA94168.1|  491|Caenorhabditis elegans Hypothetical
           protein R04D3.1 protein.
          Length = 491

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +2

Query: 80  MKSFIVLLFVVAAVGYVTGQHFPTRKCPKG 169
           M   ++L F VA VGY+   +   RK PKG
Sbjct: 1   MSPLLILAFFVATVGYLVHFYLKVRKYPKG 30


>Z50742-6|CAA90619.1|  491|Caenorhabditis elegans Hypothetical
           protein R04D3.1 protein.
          Length = 491

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +2

Query: 80  MKSFIVLLFVVAAVGYVTGQHFPTRKCPKG 169
           M   ++L F VA VGY+   +   RK PKG
Sbjct: 1   MSPLLILAFFVATVGYLVHFYLKVRKYPKG 30


>Z68219-2|CAA92476.1|  300|Caenorhabditis elegans Hypothetical
           protein T05A1.2 protein.
          Length = 300

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 20/69 (28%), Positives = 22/69 (31%)
 Frame = -3

Query: 888 GXPXSWGKXXXPPXGGXXXXXXXRXXPGXXGXXGGXXXXGXPXXKGPXXXXPXPXGXXDX 709
           G P   G    P   G          PG  G  G     G P  +GP    P P G  D 
Sbjct: 158 GAPGKPGSEGPPGPPGHDGPNGGPGQPGQPGPHGPNGHPGKPGSQGP----PGPPGHSDE 213

Query: 708 XKXEKPPTP 682
            K  +P  P
Sbjct: 214 PKPGQPGQP 222


>Z83232-3|CAE46672.1|  381|Caenorhabditis elegans Hypothetical
           protein K04B12.2b protein.
          Length = 381

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = +1

Query: 67  ENVSNEKFYCIVVCCGSCRLRHRATFS 147
           +N+ +E+F+C+  CC   RL    T++
Sbjct: 196 KNLLDEEFFCLAPCCSGMRLFQAETYT 222


>Z83232-2|CAB05754.2|  420|Caenorhabditis elegans Hypothetical
           protein K04B12.2a protein.
          Length = 420

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = +1

Query: 67  ENVSNEKFYCIVVCCGSCRLRHRATFS 147
           +N+ +E+F+C+  CC   RL    T++
Sbjct: 235 KNLLDEEFFCLAPCCSGMRLFQAETYT 261


>U41557-6|AAA83307.1|  589|Caenorhabditis elegans Collagen sequence
           x-hybridizingprotein 1 protein.
          Length = 589

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 19/71 (26%), Positives = 20/71 (28%)
 Frame = -3

Query: 888 GXPXSWGKXXXPPXGGXXXXXXXRXXPGXXGXXGGXXXXGXPXXKGPXXXXPXPXGXXDX 709
           G P  +     PP GG          P   G  G     G P   GP    P P      
Sbjct: 465 GPPGPFNPSGAPPSGGPPGPFDPSGAPPSGGPPGPFNPSGAPPSGGP----PGPFDPSGA 520

Query: 708 XKXEKPPTPXP 676
                PP P P
Sbjct: 521 PPSGMPPVPLP 531


>U07628-1|AAA17738.1|  515|Caenorhabditis elegans APX-1 protein.
          Length = 515

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 20/64 (31%), Positives = 27/64 (42%), Gaps = 3/64 (4%)
 Frame = +2

Query: 173 HSVLYCPQ-MAEPDCENPEVHDFVDHVGPCDVP-QCFCDRPNVRNTKTGKCVPESEC-** 343
           H V  C    +  DC NP       + G C  P QC C       T+  +C+P + C   
Sbjct: 158 HGVRRCSAGWSGEDCSNPICAGGCSNRGRCVAPNQCSC-ADGFNGTRCEQCLPRAGCVNG 216

Query: 344 NCVN 355
           +CVN
Sbjct: 217 DCVN 220


>AF101319-2|AAC69353.4|  515|Caenorhabditis elegans Anterior pharynx
           in excess protein1 protein.
          Length = 515

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 20/64 (31%), Positives = 27/64 (42%), Gaps = 3/64 (4%)
 Frame = +2

Query: 173 HSVLYCPQ-MAEPDCENPEVHDFVDHVGPCDVP-QCFCDRPNVRNTKTGKCVPESEC-** 343
           H V  C    +  DC NP       + G C  P QC C       T+  +C+P + C   
Sbjct: 158 HGVRRCSAGWSGEDCSNPICAGGCSNRGRCVAPNQCSC-ADGFNGTRCEQCLPRAGCVNG 216

Query: 344 NCVN 355
           +CVN
Sbjct: 217 DCVN 220


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,002,341
Number of Sequences: 27780
Number of extensions: 300948
Number of successful extensions: 875
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 689
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 859
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2412704140
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)