Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_N07
         (945 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    31   0.24 
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   3.8  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    26   8.9  

>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 31.1 bits (67), Expect = 0.24
 Identities = 16/59 (27%), Positives = 20/59 (33%)
 Frame = +1

Query: 634 PGKLPPALSPLXXXPXPXXXXXXSXXLPPXGXXVALSSXLXPGXYXXPPXPGXXSXPPP 810
           P  LPP+  P      P      +   PP      ++  L  G    PP P     PPP
Sbjct: 420 PPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPPP 478


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 16/51 (31%), Positives = 19/51 (37%), Gaps = 2/51 (3%)
 Frame = +1

Query: 715 PPXGXXVALSSXLXPGXYXXPPXP--GXXSXPPPXXGVLFSXNPPXXXPXP 861
           PP    V + +         PP P  G    PPP  GV  +  PP   P P
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 25.8 bits (54), Expect = 8.9
 Identities = 33/127 (25%), Positives = 34/127 (26%), Gaps = 1/127 (0%)
 Frame = +3

Query: 534  PIGXXP-PXQASQKSTLKSEVAKPDRTIKIPGVSPWXAPSCALPPXXXPLAXXPEXLVPX 710
            P G  P P  +      K  VA P        V P  APS A PP   P    P   VP 
Sbjct: 1079 PSGAPPVPAPSGIPPVPKPSVAAPPVPKPSVAVPPVPAPSGA-PPVPKPSVAAPPVPVPS 1137

Query: 711  SPPLXXXXGAFFIXXXRXVXXPPXXGXXVXXXPQXXGSXFPXPPXFXPPTXRXPXXPXXX 890
              P                  PP     V   P    S    PP   P     P  P   
Sbjct: 1138 GAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSS-GIPPVPKPAAGVPPVPPPSE 1196

Query: 891  XXXXPXP 911
                P P
Sbjct: 1197 APPVPKP 1203


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,779,922
Number of Sequences: 5004
Number of extensions: 46812
Number of successful extensions: 116
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 481321826
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)