Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP01_F_N07
(945 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41543-12|AAZ91345.1| 401|Caenorhabditis elegans Groundhog (hed... 34 0.17
AF000198-8|AAP68908.1| 435|Caenorhabditis elegans Collagen prot... 31 1.2
Z12018-1|CAD88219.2| 774|Caenorhabditis elegans Hypothetical pr... 31 1.6
Z11126-8|CAD88221.2| 774|Caenorhabditis elegans Hypothetical pr... 31 1.6
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 30 2.1
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 30 2.1
U10438-9|AAU87834.1| 616|Caenorhabditis elegans Hypothetical pr... 29 3.7
AL032652-4|CAB63398.1| 486|Caenorhabditis elegans Hypothetical ... 29 3.7
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 29 4.8
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 29 4.8
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 29 4.8
>U41543-12|AAZ91345.1| 401|Caenorhabditis elegans Groundhog
(hedgehog-like family)protein 7 protein.
Length = 401
Score = 33.9 bits (74), Expect = 0.17
Identities = 23/95 (24%), Positives = 29/95 (30%), Gaps = 1/95 (1%)
Frame = +3
Query: 600 PDRTIKIPGVSPWXAPSCALPPXXXPLAXXPEXLVPXSPPLXXXXGAFFIXXXRXVXXP- 776
P + + P P P A+P PLA P+ VP P + P
Sbjct: 58 PQQAVPAPAPPPAPYPQHAVPAPAPPLASYPQNAVPVPAPPPAPYPQHAVPAPAPPPAPY 117
Query: 777 PXXGXXVXXXPQXXGSXFPXPPXFXPPTXRXPXXP 881
P Q P PP + PP P P
Sbjct: 118 PQHAVPAPAPYQQQPPPPPPPPHYPPPPPHYPPPP 152
>AF000198-8|AAP68908.1| 435|Caenorhabditis elegans Collagen protein
51 protein.
Length = 435
Score = 31.1 bits (67), Expect = 1.2
Identities = 20/66 (30%), Positives = 24/66 (36%), Gaps = 1/66 (1%)
Frame = -2
Query: 824 RTPXLGGGX-DXXPGXGGXXYXPGXXYEESATXXPKGGRXXDXXFXXXGXGXXXRGESAG 648
RTP GGG D G GG Y G + + GG + G G + G
Sbjct: 316 RTPAGGGGGGDFPAGGGGGGYSTGGGGGRADSGGAAGGAGGAGGYSGGGGGGGGGAAAGG 375
Query: 647 GSXPGG 630
G GG
Sbjct: 376 GYNAGG 381
>Z12018-1|CAD88219.2| 774|Caenorhabditis elegans Hypothetical
protein ZK643.8 protein.
Length = 774
Score = 30.7 bits (66), Expect = 1.6
Identities = 23/85 (27%), Positives = 23/85 (27%)
Frame = -2
Query: 872 GXXXGXGXKXGGXXEXRTPXLGGGXDXXPGXGGXXYXPGXXYEESATXXPKGGRXXDXXF 693
G G G GG P GGG GG Y GG
Sbjct: 188 GGGCGGGGSSGGGGYAVAPSGGGGCGGGGSSGGGGYASAPSGGGGYATSGGGGSGGYATG 247
Query: 692 XXXGXGXXXRGESAGGSXPGGNAWY 618
G G G S GG GG Y
Sbjct: 248 GSSGGGYSSGGSSGGGYSTGGGGGY 272
>Z11126-8|CAD88221.2| 774|Caenorhabditis elegans Hypothetical
protein ZK643.8 protein.
Length = 774
Score = 30.7 bits (66), Expect = 1.6
Identities = 23/85 (27%), Positives = 23/85 (27%)
Frame = -2
Query: 872 GXXXGXGXKXGGXXEXRTPXLGGGXDXXPGXGGXXYXPGXXYEESATXXPKGGRXXDXXF 693
G G G GG P GGG GG Y GG
Sbjct: 188 GGGCGGGGSSGGGGYAVAPSGGGGCGGGGSSGGGGYASAPSGGGGYATSGGGGSGGYATG 247
Query: 692 XXXGXGXXXRGESAGGSXPGGNAWY 618
G G G S GG GG Y
Sbjct: 248 GSSGGGYSSGGSSGGGYSTGGGGGY 272
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 30.3 bits (65), Expect = 2.1
Identities = 17/48 (35%), Positives = 17/48 (35%)
Frame = +2
Query: 797 PXXPPXXGFXFPXTPPXXXPXPSXPXXPGXXXXXXXPPPGXXXXFFPP 940
P PP G P PP P P PG PPP F PP
Sbjct: 287 PPPPPSSGMWPPPPPPPPGRTPGPPGMPG------MPPPPPPSRFGPP 328
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 30.3 bits (65), Expect = 2.1
Identities = 17/48 (35%), Positives = 17/48 (35%)
Frame = +2
Query: 797 PXXPPXXGFXFPXTPPXXXPXPSXPXXPGXXXXXXXPPPGXXXXFFPP 940
P PP G P PP P P PG PPP F PP
Sbjct: 297 PPPPPSSGMWPPPPPPPPGRTPGPPGMPG------MPPPPPPSRFGPP 338
>U10438-9|AAU87834.1| 616|Caenorhabditis elegans Hypothetical
protein B0280.13 protein.
Length = 616
Score = 29.5 bits (63), Expect = 3.7
Identities = 19/65 (29%), Positives = 22/65 (33%), Gaps = 2/65 (3%)
Frame = +3
Query: 531 FPIGXXPPXQASQKSTLKSEVAKPDRTIKIPGVSPWXAPSCALPPXXXPL--AXXPEXLV 704
FPI P ++ T P I P SP A PP PL P +
Sbjct: 453 FPISTGPSYSSTTPPTTPKPAPPPPSRIPNPSPSPQPAEVSKSPPPPPPLPPIATPSSVP 512
Query: 705 PXSPP 719
P PP
Sbjct: 513 PPPPP 517
>AL032652-4|CAB63398.1| 486|Caenorhabditis elegans Hypothetical
protein Y63D3A.5 protein.
Length = 486
Score = 29.5 bits (63), Expect = 3.7
Identities = 22/81 (27%), Positives = 22/81 (27%)
Frame = +2
Query: 698 PXPXXSPPXGXXWRFLHXSXPAGXXXPXXRVXGPXXPPXXGFXFPXTPPXXXPXPSXPXX 877
P P PP P G P GP P G PP P P
Sbjct: 380 PPPQSGPPGAFAPPPSAFGAPQGPGGPGG--YGPPPPGGPGAPGSYGPPQGGPGGFGPPP 437
Query: 878 PGXXXXXXXPPPGXXXXFFPP 940
PG PP G PP
Sbjct: 438 PGGPGAYGPPPTGFPPVGAPP 458
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 29.1 bits (62), Expect = 4.8
Identities = 22/81 (27%), Positives = 22/81 (27%)
Frame = +2
Query: 671 PXPXXXTXXPXPXXSPPXGXXWRFLHXSXPAGXXXPXXRVXGPXXPPXXGFXFPXTPPXX 850
P P P PP G P P G P G P PP
Sbjct: 715 PPPGLPPITGGPPPPPPPGGL-------PPITGGPPPPPPPGGLPPISGGPPPPPPPPGG 767
Query: 851 XPXPSXPXXPGXXXXXXXPPP 913
P P P PG PPP
Sbjct: 768 CPPPPPPPPPGGFKGGPPPPP 788
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 29.1 bits (62), Expect = 4.8
Identities = 22/81 (27%), Positives = 22/81 (27%)
Frame = +2
Query: 671 PXPXXXTXXPXPXXSPPXGXXWRFLHXSXPAGXXXPXXRVXGPXXPPXXGFXFPXTPPXX 850
P P P PP G P P G P G P PP
Sbjct: 715 PPPGLPPITGGPPPPPPPGGL-------PPITGGPPPPPPPGGLPPISGGPPPPPPPPGG 767
Query: 851 XPXPSXPXXPGXXXXXXXPPP 913
P P P PG PPP
Sbjct: 768 CPPPPPPPPPGGFKGGPPPPP 788
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 29.1 bits (62), Expect = 4.8
Identities = 22/81 (27%), Positives = 22/81 (27%)
Frame = +2
Query: 671 PXPXXXTXXPXPXXSPPXGXXWRFLHXSXPAGXXXPXXRVXGPXXPPXXGFXFPXTPPXX 850
P P P PP G P P G P G P PP
Sbjct: 298 PPPGLPPITGGPPPPPPPGGL-------PPITGGPPPPPPPGGLPPISGGPPPPPPPPGG 350
Query: 851 XPXPSXPXXPGXXXXXXXPPP 913
P P P PG PPP
Sbjct: 351 CPPPPPPPPPGGFKGGPPPPP 371
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,613,546
Number of Sequences: 27780
Number of extensions: 347699
Number of successful extensions: 1089
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 758
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 984
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2444174194
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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