Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_N06
         (955 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces...    29   0.73 
SPBC56F2.05c |||transcription factor |Schizosaccharomyces pombe|...    28   1.7  
SPBC1198.03c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    28   1.7  
SPAPB1E7.09 |ogm2|oma2|protein O-mannosyltransferase Ogm2|Schizo...    27   2.9  
SPBC1604.21c |ptr3|uba1, SPBC211.09|ubiquitin activating enzyme ...    27   5.1  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    27   5.1  
SPBC12C2.03c |||FAD binding protein |Schizosaccharomyces pombe|c...    26   6.8  
SPCC757.12 |||alpha-amylase homolog |Schizosaccharomyces pombe|c...    26   6.8  

>SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 897

 Score = 29.5 bits (63), Expect = 0.73
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -1

Query: 583 FYSWCYFRALCVYWITGFIYETFN 512
           ++SWCY+ A  V W  GF  +  N
Sbjct: 800 YHSWCYYVAALVLWSIGFALDEEN 823


>SPBC56F2.05c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 397

 Score = 28.3 bits (60), Expect = 1.7
 Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
 Frame = -2

Query: 588 VNSIPGVISEPSVFTGLPASSTKPSTVHSPLSCLYPKPSFMTKVQK*ILSPIFSAAFRS- 412
           V+  P   S P  +  +P  ST P+ V    S   P P+ +TK +   + PI +++ RS 
Sbjct: 111 VSHSPHSFSNPR-YVAVPQKSTSPNQV---CSYCEPLPNHLTKTKSCSIPPILNSSDRSP 166

Query: 411 LNIHLPF 391
           L++  P+
Sbjct: 167 LSLPTPY 173


>SPBC1198.03c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 249

 Score = 28.3 bits (60), Expect = 1.7
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = +1

Query: 112 VNILHAVFNQTYRTK*NTTSVTRMYKTCV 198
           V++ H V N+T++TK NT  + + +   V
Sbjct: 47  VHVFHGVVNRTFKTKGNTVGLPKSFSKAV 75


>SPAPB1E7.09 |ogm2|oma2|protein O-mannosyltransferase
           Ogm2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 739

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 17/63 (26%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
 Frame = +2

Query: 446 IYFWTFVIKDGLGYRQDNGEWTVEGFVDEA--GNPVNTEGSEITPGIEFTSTSLNPESPS 619
           IY +TF I+  + YR   G+  +         G+P+     ++  G +FT  S NP    
Sbjct: 293 IYAFTFWIQFAVLYRSGPGDAQMPSLFQARLEGSPLTKNPIDLMYGSKFTLKSRNPTGAL 352

Query: 620 VHT 628
           +H+
Sbjct: 353 LHS 355


>SPBC1604.21c |ptr3|uba1, SPBC211.09|ubiquitin activating enzyme
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1012

 Score = 26.6 bits (56), Expect = 5.1
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = +3

Query: 114 KHFTCCVQSNLPNQIEHNI 170
           K F  C   N PN+IEH I
Sbjct: 588 KSFPICTLKNFPNRIEHTI 606


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 26.6 bits (56), Expect = 5.1
 Identities = 13/40 (32%), Positives = 18/40 (45%)
 Frame = +1

Query: 568  NTRNRIHQHQSEPRVPLSPYPISLQTTCPLNHHLKAIPXE 687
            ++R  +H+H S      S  P  + TT P N    A P E
Sbjct: 1329 DSRKSLHRHLSRSSSRASKKPSIVSTTGPFNESFSAKPVE 1368


>SPBC12C2.03c |||FAD binding protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 571

 Score = 26.2 bits (55), Expect = 6.8
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = +2

Query: 299 ASRLFAFHGKLNEEMEGLEAGHWSRDITK 385
           A +++ FHG  ++E++ L  G W   + K
Sbjct: 423 AGKVWVFHGCRDQELDELYHGEWENPLQK 451


>SPCC757.12 |||alpha-amylase homolog |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 625

 Score = 26.2 bits (55), Expect = 6.8
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = +2

Query: 515 EGFVDEAGNPVNTEGSEITPGIEFTSTSLNPESPSVHTQSAS 640
           E  +   GN + T  S  +    + STS++    SVHT SA+
Sbjct: 487 EASLTSFGNFLGTATSYSSASASYPSTSMSASLSSVHTSSAT 528


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,622,609
Number of Sequences: 5004
Number of extensions: 77483
Number of successful extensions: 225
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 216
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 225
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 487313384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)