Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_N06
         (955 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_07_0360 + 43056226-43057566                                         29   5.5  
01_06_1536 + 38075023-38075359,38075834-38075963,38076204-380764...    28   9.5  
01_01_0099 - 751627-752126,752866-753056,753188-753945                 28   9.5  

>01_07_0360 + 43056226-43057566
          Length = 446

 Score = 29.1 bits (62), Expect = 5.5
 Identities = 13/38 (34%), Positives = 17/38 (44%)
 Frame = +2

Query: 176 RECTKHVCGSCYLKSCCATRHHRPRSKQYTLKDLGFPF 289
           +EC   +C +C L  CC   H +P  K   L     PF
Sbjct: 330 KECGHQMCAACTLAICC---HSKPNPKTLLLHPPACPF 364


>01_06_1536 +
           38075023-38075359,38075834-38075963,38076204-38076419,
           38076520-38077137,38077226-38078075
          Length = 716

 Score = 28.3 bits (60), Expect = 9.5
 Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
 Frame = +1

Query: 586 HQHQSEPRVPLSPYPISLQTTCPLNHHLK---AIPXELSLSTVS 708
           H  Q  PR PL+P+ +S++ +  L  H K   A P EL L   S
Sbjct: 500 HYDQHTPRAPLNPFLLSVRCSIELLDHPKDYTAPPVELVLLPAS 543


>01_01_0099 - 751627-752126,752866-753056,753188-753945
          Length = 482

 Score = 28.3 bits (60), Expect = 9.5
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = -3

Query: 191 VLYILVTDVVFYLVR*V*LNTACKMFTCE*YVRNATYP 78
           VL +LV D        + L   C  FTC  ++RNA+YP
Sbjct: 22  VLAVLVPDAGGRRHHQIQLQPECPTFTCGAHLRNASYP 59


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,271,742
Number of Sequences: 37544
Number of extensions: 500516
Number of successful extensions: 1263
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1226
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1263
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2752963900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)