Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_N06
         (955 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_32564| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.4  
SB_56523| Best HMM Match : Pox_A_type_inc (HMM E-Value=0)              31   1.8  
SB_5687| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   2.4  
SB_14707| Best HMM Match : A_deamin (HMM E-Value=0)                    29   4.2  
SB_12832| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.2  
SB_40454| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.5  
SB_3801| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   5.5  
SB_13658| Best HMM Match : MbeD_MobD (HMM E-Value=2.3)                 28   9.7  
SB_35867| Best HMM Match : Fibrinogen_C (HMM E-Value=6.5e-13)          28   9.7  

>SB_32564| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 153

 Score = 31.1 bits (67), Expect = 1.4
 Identities = 19/42 (45%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
 Frame = +2

Query: 383 KPKNGRWIFRDRNAALKIGDKIYFWTFVI-KDGLGYRQDNGE 505
           K K  +W   D NA  K+GD+ + +  V+ K GLG R DNGE
Sbjct: 25  KFKPHKWRLCDMNA--KVGDQNWDYERVMGKHGLGVRNDNGE 64


>SB_56523| Best HMM Match : Pox_A_type_inc (HMM E-Value=0)
          Length = 2858

 Score = 30.7 bits (66), Expect = 1.8
 Identities = 17/62 (27%), Positives = 29/62 (46%)
 Frame = +2

Query: 470  KDGLGYRQDNGEWTVEGFVDEAGNPVNTEGSEITPGIEFTSTSLNPESPSVHTQSASRQP 649
            K+  GY +D  E   + F DE  +  +T   E +P IEF+    + E   + T+    + 
Sbjct: 2791 KEKSGYSEDTKEQIEDFFQDEGISAESTRAVESSPPIEFSDEDESSEEEEITTKKVVVKT 2850

Query: 650  AR 655
            +R
Sbjct: 2851 SR 2852


>SB_5687| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 144

 Score = 30.3 bits (65), Expect = 2.4
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = +2

Query: 497 NGEWTVEGFVDEAGNPVNTEGSEITPGIEFTSTSLN 604
           +G   +   VD +GNPV+ E   +T G++  S+ LN
Sbjct: 14  SGGTALISLVDGSGNPVSVEVQSVTDGVKILSSILN 49


>SB_14707| Best HMM Match : A_deamin (HMM E-Value=0)
          Length = 1243

 Score = 29.5 bits (63), Expect = 4.2
 Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 5/55 (9%)
 Frame = +2

Query: 482 GYRQDNGEWTVEGFVDEAGNPVNT---EGSEITPGIEFTSTSLN--PESPSVHTQ 631
           G RQDN E +     ++AG PVN    + + I P     STS     E  ++H++
Sbjct: 190 GLRQDNNEMSTSPIAEQAGGPVNDFMGKQNRIIPNNMNNSTSSQHMQEGQAIHSE 244


>SB_12832| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1169

 Score = 29.5 bits (63), Expect = 4.2
 Identities = 15/50 (30%), Positives = 21/50 (42%)
 Frame = +1

Query: 583 IHQHQSEPRVPLSPYPISLQTTCPLNHHLKAIPXELSLSTVSVPGFVCXG 732
           +  HQ  PRVP  P P  + +    + +  A P   S S  + P   C G
Sbjct: 91  VTSHQMVPRVPPVPCPTGMYSLGAASMNCTACPAGFSCSDPAAPPAACSG 140


>SB_40454| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 137

 Score = 29.1 bits (62), Expect = 5.5
 Identities = 15/58 (25%), Positives = 30/58 (51%)
 Frame = -1

Query: 532 FIYETFNCPLPVILSVS*AVLYDKSPKVNLISDFQRSISISEYPSSVFWLRNVPGPMA 359
           +I + +N     I  +   ++ DKS  V +I DF RS  ++E  + + +++ +  P A
Sbjct: 2   YIQDVYNVNREEISQLLPKLIQDKSATVEMIKDFCRSFKVAEEEALLHYVKTLLLPTA 59


>SB_3801| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 421

 Score = 29.1 bits (62), Expect = 5.5
 Identities = 13/46 (28%), Positives = 22/46 (47%)
 Frame = +2

Query: 383 KPKNGRWIFRDRNAALKIGDKIYFWTFVIKDGLGYRQDNGEWTVEG 520
           KPKN +W++ +      IG        +I   + Y+ D+G W+  G
Sbjct: 140 KPKNQKWVWYEHENPHNIGYDARVLNGMIDIAVTYKMDSGIWSPYG 185


>SB_13658| Best HMM Match : MbeD_MobD (HMM E-Value=2.3)
          Length = 529

 Score = 28.3 bits (60), Expect = 9.7
 Identities = 15/48 (31%), Positives = 24/48 (50%)
 Frame = +2

Query: 512 VEGFVDEAGNPVNTEGSEITPGIEFTSTSLNPESPSVHTQSASRQPAR 655
           +E F   AG P  +  S I+PG+  +  S+ P S +   +S S   +R
Sbjct: 395 LEAFRAAAGTPTGSRSSSISPGMRSSFGSIAPPSRTSTRRSRSTPRSR 442


>SB_35867| Best HMM Match : Fibrinogen_C (HMM E-Value=6.5e-13)
          Length = 445

 Score = 28.3 bits (60), Expect = 9.7
 Identities = 17/63 (26%), Positives = 26/63 (41%)
 Frame = +2

Query: 320 HGKLNEEMEGLEAGHWSRDITKPKNGRWIFRDRNAALKIGDKIYFWTFVIKDGLGYRQDN 499
           HG + E   G +  HW RD        W+ +D   A            VI++G+  R ++
Sbjct: 37  HGLVKEAETGAKVEHWKRDTGSSGIPAWM-KDTGKAYNGYPSQVTRNRVIREGIFSRLES 95

Query: 500 GEW 508
            EW
Sbjct: 96  MEW 98


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,244,738
Number of Sequences: 59808
Number of extensions: 605533
Number of successful extensions: 1755
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1601
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1751
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2800542235
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)