Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_N06
         (955 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U97009-1|AAC69030.2|  339|Caenorhabditis elegans Serpentine rece...    36   0.043
U97192-1|AAB52434.2|  986|Caenorhabditis elegans Hypothetical pr...    30   2.1  

>U97009-1|AAC69030.2|  339|Caenorhabditis elegans Serpentine
           receptor, class d (delta)protein 32 protein.
          Length = 339

 Score = 35.9 bits (79), Expect = 0.043
 Identities = 17/44 (38%), Positives = 25/44 (56%)
 Frame = -3

Query: 611 TLGSDWCW*ILFLVLFQSPLCLLDYRLHLRNLQLSTPRYPVCIL 480
           TLG  +   +LFL+ F+SP CL  Y + L N  ++   Y +C L
Sbjct: 19  TLGIIFNGFLLFLIFFKSPSCLTPYTVFLANTSITQLGYCICFL 62


>U97192-1|AAB52434.2|  986|Caenorhabditis elegans Hypothetical
           protein C01F4.2a protein.
          Length = 986

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +1

Query: 568 NTRNRIHQHQSEPRVPLSPYPISLQTTCPLNHH 666
           N  +++  H+S P V LSP+P +L+      HH
Sbjct: 745 NHLSKMDSHESHPGVLLSPFPATLEEDSSPRHH 777


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,978,428
Number of Sequences: 27780
Number of extensions: 434388
Number of successful extensions: 1238
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1188
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1238
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2475644248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)