Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_N06
         (955 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g50620.1 68414.m05688 PHD finger family protein contains Pfam...    33   0.37 
At1g48195.1 68414.m05380 zinc finger (CCCH-type) family protein ...    32   0.49 
At3g20280.2 68416.m02570 PHD finger family protein contains Pfam...    31   1.5  
At3g20280.1 68416.m02569 PHD finger family protein contains Pfam...    31   1.5  
At5g38490.1 68418.m04652 hypothetical protein contains Pfam prof...    30   2.6  
At5g13680.1 68418.m01593 IKI3 family protein weak similarity to ...    29   6.0  

>At1g50620.1 68414.m05688 PHD finger family protein contains Pfam
           domain, PF00628: PHD-finger
          Length = 629

 Score = 32.7 bits (71), Expect = 0.37
 Identities = 14/34 (41%), Positives = 22/34 (64%)
 Frame = -1

Query: 127 HVKCLHANNMLGTRRTRPHWAICGLRFQNLKEFP 26
           H+KCLHA+N+ G  ++  H + C ++  N K FP
Sbjct: 348 HLKCLHAHNIKGVPKSEWHCSRC-VQLYNGKSFP 380


>At1g48195.1 68414.m05380 zinc finger (CCCH-type) family protein
           contains Pfam profile PF00642: Zinc finger
           C-x8-C-x5-C-x3-H type
          Length = 82

 Score = 32.3 bits (70), Expect = 0.49
 Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 4/51 (7%)
 Frame = +2

Query: 152 PNRTQHP*RECTKHV-CGSCYLKSCCATRHHR---PRSKQYTLKDLGFPFQ 292
           P R   P  EC+ ++  G+CYLK  C   H +   P   Q TL D G P +
Sbjct: 7   PERPGEP--ECSYYLRTGNCYLKQNCKYHHPKNITPSEPQCTLNDKGLPLR 55


>At3g20280.2 68416.m02570 PHD finger family protein contains Pfam
           profile: PF00628 PHD-finger
          Length = 482

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 15/34 (44%), Positives = 19/34 (55%)
 Frame = -1

Query: 127 HVKCLHANNMLGTRRTRPHWAICGLRFQNLKEFP 26
           H+KCL  NNM G  ++  H + C   F N K FP
Sbjct: 72  HLKCLQGNNMKGVPKSEWHCSRCVQAF-NGKPFP 104


>At3g20280.1 68416.m02569 PHD finger family protein contains Pfam
           profile: PF00628 PHD-finger
          Length = 743

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 15/34 (44%), Positives = 19/34 (55%)
 Frame = -1

Query: 127 HVKCLHANNMLGTRRTRPHWAICGLRFQNLKEFP 26
           H+KCL  NNM G  ++  H + C   F N K FP
Sbjct: 333 HLKCLQGNNMKGVPKSEWHCSRCVQAF-NGKPFP 365


>At5g38490.1 68418.m04652 hypothetical protein contains Pfam profile
           PF03754: Domain of unknown function (DUF313)
          Length = 364

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 16/48 (33%), Positives = 27/48 (56%)
 Frame = +2

Query: 353 EAGHWSRDITKPKNGRWIFRDRNAALKIGDKIYFWTFVIKDGLGYRQD 496
           ++GH + + T   N  W    ++++LK+GDKI  WTF  +  L +  D
Sbjct: 317 DSGHGTLNYTL--NWGWNDVVKSSSLKVGDKISLWTFRCRGVLCFALD 362


>At5g13680.1 68418.m01593 IKI3 family protein weak similarity to
           SP|O95163 IkappaB kinase complex-associated protein (IKK
           complex-associated protein) (p150) {Homo sapiens};
           contains Pfam profile PF04762: IKI3 family
          Length = 1319

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 13/53 (24%), Positives = 23/53 (43%)
 Frame = -2

Query: 513 TVHSPLSCLYPKPSFMTKVQK*ILSPIFSAAFRSLNIHLPFFGFVMSLDQWPA 355
           T+   L C+YP+   ++ +   +    F  AF  +  H   F  ++ L  W A
Sbjct: 696 TMRGNLECIYPRKLVLSSITNALAQQRFKDAFNLVRRHRIDFNVIVDLYGWQA 748


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,876,349
Number of Sequences: 28952
Number of extensions: 406523
Number of successful extensions: 1052
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1017
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1051
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2295205728
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)