Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_N05
         (963 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    23   3.5  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    22   6.2  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    22   6.2  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    22   6.2  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    22   6.2  

>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10
           protein.
          Length = 2700

 Score = 23.0 bits (47), Expect = 3.5
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +3

Query: 189 RKMPLRRAVRYLKNVIEKKECIPFR 263
           R +PLR AV ++ ++I     +P R
Sbjct: 59  RALPLRSAVEHIPDLIADSRRLPLR 83


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 8/24 (33%), Positives = 12/24 (50%)
 Frame = +2

Query: 239 KERVYSIPSLQRRRWSLCSSKAVW 310
           K+ +  +PS +R  W  C   A W
Sbjct: 117 KQFIVKLPSAERVAWMWCLIFAFW 140


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 8/24 (33%), Positives = 12/24 (50%)
 Frame = +2

Query: 239 KERVYSIPSLQRRRWSLCSSKAVW 310
           K+ +  +PS +R  W  C   A W
Sbjct: 117 KQFIVKLPSAERVAWMWCLIFAFW 140


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 8/24 (33%), Positives = 12/24 (50%)
 Frame = +2

Query: 239 KERVYSIPSLQRRRWSLCSSKAVW 310
           K+ +  +PS +R  W  C   A W
Sbjct: 117 KQFIVKLPSAERVAWMWCLIFAFW 140


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 8/24 (33%), Positives = 12/24 (50%)
 Frame = +2

Query: 239 KERVYSIPSLQRRRWSLCSSKAVW 310
           K+ +  +PS +R  W  C   A W
Sbjct: 117 KQFIVKLPSAERVAWMWCLIFAFW 140


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 161,071
Number of Sequences: 336
Number of extensions: 3087
Number of successful extensions: 11
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 27202879
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)