Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_N05
         (963 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2F12.04 |rpl1701|rpl17, rpl17-1|60S ribosomal protein L17|Sc...   101   2e-22
SPCC364.03 |rpl1702|rpl17-2, rpl17|60S ribosomal protein L17|Sch...   100   3e-22
SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces po...    31   0.24 
SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog 1|Schizosa...    27   3.0  
SPBC2A9.11c ||SPBC2D10.01c|nuclear export factor|Schizosaccharom...    27   3.9  
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc...    27   5.2  
SPAC57A10.05c |pof1||F-box protein Pof1|Schizosaccharomyces pomb...    26   9.1  

>SPBC2F12.04 |rpl1701|rpl17, rpl17-1|60S ribosomal protein
           L17|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 187

 Score =  101 bits (241), Expect = 2e-22
 Identities = 43/71 (60%), Positives = 56/71 (78%)
 Frame = +1

Query: 325 RWPKKSAEFLLQLLRNAESNADNKTLDVDRLVIDHIQVNRAPCLRRRTYRAHGRINPYMS 504
           RWP KS +F   LL+NAE+NA+ K LD+D+L+I H+QVN AP  RRRTYRAHGR+  Y+S
Sbjct: 82  RWPVKSVKFFYDLLKNAEANAEAKGLDMDKLIIKHVQVNAAPKQRRRTYRAHGRVTAYLS 141

Query: 505 SPCHIEVCLSE 537
           SP HIE+ ++E
Sbjct: 142 SPSHIEIIVAE 152



 Score = 93.9 bits (223), Expect = 3e-20
 Identities = 45/80 (56%), Positives = 53/80 (66%)
 Frame = +3

Query: 81  MGRYSREPDNPAKSCKARGSNLRVHFKNTYETAMAIRKMPLRRAVRYLKNVIEKKECIPF 260
           M RYS  P    K  KARG+ LR HFKN+ E A  I  M L++A  +L NV E K+ +PF
Sbjct: 1   MVRYSASPALETKCAKARGAYLRTHFKNSREVAFTINGMSLKKAFIFLDNVKEHKQAVPF 60

Query: 261 RRFNGGVGRCAQAKQFGTTQ 320
           RRFNGGVGR AQ K+FG TQ
Sbjct: 61  RRFNGGVGRTAQGKEFGVTQ 80


>SPCC364.03 |rpl1702|rpl17-2, rpl17|60S ribosomal protein
           L17|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 187

 Score =  100 bits (240), Expect = 3e-22
 Identities = 43/71 (60%), Positives = 55/71 (77%)
 Frame = +1

Query: 325 RWPKKSAEFLLQLLRNAESNADNKTLDVDRLVIDHIQVNRAPCLRRRTYRAHGRINPYMS 504
           RWP KS  F   LL+NAE+NA+ K LD+D+L+I H+QVN AP  RRRTYRAHGR+  Y+S
Sbjct: 82  RWPVKSVNFFYDLLKNAEANAEAKGLDMDKLIIKHVQVNAAPKQRRRTYRAHGRVTAYLS 141

Query: 505 SPCHIEVCLSE 537
           SP HIE+ ++E
Sbjct: 142 SPSHIEIIVAE 152



 Score = 93.1 bits (221), Expect = 5e-20
 Identities = 45/80 (56%), Positives = 53/80 (66%)
 Frame = +3

Query: 81  MGRYSREPDNPAKSCKARGSNLRVHFKNTYETAMAIRKMPLRRAVRYLKNVIEKKECIPF 260
           M RYS  P    K  KARG+ LR HFKN+ E A  I  M L++A  +L NV E K+ +PF
Sbjct: 1   MVRYSAAPALETKCAKARGAYLRTHFKNSREVAFTINGMNLKKAFIFLDNVKEHKQAVPF 60

Query: 261 RRFNGGVGRCAQAKQFGTTQ 320
           RRFNGGVGR AQ K+FG TQ
Sbjct: 61  RRFNGGVGRTAQGKEFGVTQ 80


>SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1159

 Score = 31.1 bits (67), Expect = 0.24
 Identities = 20/61 (32%), Positives = 30/61 (49%)
 Frame = +1

Query: 295 KQSSLAQHRXRWPKKSAEFLLQLLRNAESNADNKTLDVDRLVIDHIQVNRAPCLRRRTYR 474
           K  S +QH+   PK SA  LL +LR+      N TL++  +  D I      C +R+  R
Sbjct: 151 KLGSTSQHQIATPKSSAS-LLNILRSLHDEQKN-TLNISSVKQDRITEANPTCEKRKPSR 208

Query: 475 A 477
           +
Sbjct: 209 S 209


>SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 941

 Score = 27.5 bits (58), Expect = 3.0
 Identities = 14/39 (35%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
 Frame = +3

Query: 141 NLRVHFKNTYETAMAIRKMPLRRAVRYLKNVIEK-KECI 254
           NLRV  K T ++ +++   P  +  RYLK ++E  K+C+
Sbjct: 102 NLRVSKKKTSKSDVSMAGFPFFKLDRYLKILVEDLKKCV 140


>SPBC2A9.11c ||SPBC2D10.01c|nuclear export
           factor|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 395

 Score = 27.1 bits (57), Expect = 3.9
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = +1

Query: 313 QHRXRWPKKSAEFLLQLLRNAESNADNKTLDVDRLVI 423
           +H   WP    EF+ + +++AE N+  +  D  +L+I
Sbjct: 4   EHHSPWPDSLKEFIGRCIQDAEENSQPELEDEVKLLI 40


>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
           Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1958

 Score = 26.6 bits (56), Expect = 5.2
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -1

Query: 318 VLCQTALLEHSDQRRR*SDGMEYTLSFQ 235
           ++C TA+L+H D  RR   G+ + L F+
Sbjct: 846 IVCNTAVLDHWDITRRIEYGIAHILCFR 873


>SPAC57A10.05c |pof1||F-box protein Pof1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 605

 Score = 25.8 bits (54), Expect = 9.1
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +1

Query: 148 VFTLRTHMRPQWQSGRCRSVVL 213
           V+  R  +   W+ GRCR VVL
Sbjct: 248 VYAERCRVECNWRHGRCRQVVL 269


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,745,910
Number of Sequences: 5004
Number of extensions: 47901
Number of successful extensions: 124
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 493304942
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)