Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_N05
         (963 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1361 - 26398987-26399019,26399320-26399387,26399458-263995...   118   7e-27
09_02_0105 - 4337047-4337079,4337175-4337242,4337323-4337425,433...   116   3e-26
11_03_0158 + 10911997-10912078,10912203-10912288,10913780-109138...    29   5.5  
01_05_0279 + 20318440-20318688,20318785-20318931,20319449-203196...    29   5.5  
09_04_0308 + 16567361-16568854,16568946-16569068,16569372-165696...    29   7.3  

>08_02_1361 -
           26398987-26399019,26399320-26399387,26399458-26399560,
           26399658-26399888,26400791-26400826,26400891-26400931,
           26401028-26401064,26401158-26401160
          Length = 183

 Score =  118 bits (284), Expect = 7e-27
 Identities = 54/81 (66%), Positives = 64/81 (79%)
 Frame = +1

Query: 298 QSSLAQHRXRWPKKSAEFLLQLLRNAESNADNKTLDVDRLVIDHIQVNRAPCLRRRTYRA 477
           +S  +  + RWP KSA F+L LL+NAESNAD K LDVD L + HIQVN+A   RRRTYRA
Sbjct: 86  KSRQSNGQGRWPAKSARFILDLLKNAESNADVKGLDVDNLFVSHIQVNQAQKQRRRTYRA 145

Query: 478 HGRINPYMSSPCHIEVCLSER 540
           HGRINPYMSSPCH+E+ LSE+
Sbjct: 146 HGRINPYMSSPCHVELILSEK 166



 Score = 93.1 bits (221), Expect = 3e-19
 Identities = 49/86 (56%), Positives = 58/86 (67%), Gaps = 12/86 (13%)
 Frame = +3

Query: 81  MGRYSREPDNPAKSCKARGSNLRVHFK------------NTYETAMAIRKMPLRRAVRYL 224
           MG+YS EP NP KS KA G +LRVHFK            NT ETA A+RK+PL +A RYL
Sbjct: 1   MGKYSTEPSNPTKSAKAMGRDLRVHFKVIVFARFVQCCSNTRETAFALRKLPLVKAKRYL 60

Query: 225 KNVIEKKECIPFRRFNGGVGRCAQAK 302
           ++VI  K+ IPFRR+ GGVGR AQ K
Sbjct: 61  EDVIAHKQAIPFRRYCGGVGRTAQVK 86


>09_02_0105 -
           4337047-4337079,4337175-4337242,4337323-4337425,
           4337507-4337737,4339307-4339347,4339437-4339473,
           4339603-4339605
          Length = 171

 Score =  116 bits (279), Expect = 3e-26
 Identities = 53/72 (73%), Positives = 60/72 (83%)
 Frame = +1

Query: 325 RWPKKSAEFLLQLLRNAESNADNKTLDVDRLVIDHIQVNRAPCLRRRTYRAHGRINPYMS 504
           RWP KSA F+L LL+NAESNA+ K LDVD L + HIQVN+A   RRRTYRAHGRINPYMS
Sbjct: 83  RWPAKSARFILDLLKNAESNAEVKGLDVDTLYVSHIQVNQAQKQRRRTYRAHGRINPYMS 142

Query: 505 SPCHIEVCLSER 540
           SPCHIE+ LSE+
Sbjct: 143 SPCHIELILSEK 154



 Score =  104 bits (250), Expect = 9e-23
 Identities = 50/74 (67%), Positives = 59/74 (79%)
 Frame = +3

Query: 81  MGRYSREPDNPAKSCKARGSNLRVHFKNTYETAMAIRKMPLRRAVRYLKNVIEKKECIPF 260
           M +YSRE +NP KS KA G +LRVHFKNT ETA AIRK+PL +A RYL++VI  K+ IPF
Sbjct: 1   MVKYSREANNPTKSSKAMGRDLRVHFKNTRETAFAIRKLPLGKAKRYLEDVIAHKQAIPF 60

Query: 261 RRFNGGVGRCAQAK 302
           RR+ GGVGR AQAK
Sbjct: 61  RRYCGGVGRTAQAK 74


>11_03_0158 +
           10911997-10912078,10912203-10912288,10913780-10913857,
           10913967-10914098,10914385-10914435,10914529-10914669,
           10914754-10914876,10914989-10915066,10915448-10915541,
           10915633-10915739,10915936-10916019,10916649-10916744,
           10916835-10917023,10917705-10917780,10918507-10918610,
           10918708-10918967,10920000-10920086,10920184-10920411,
           10920752-10920826,10921264-10921346,10921552-10921661
          Length = 787

 Score = 29.1 bits (62), Expect = 5.5
 Identities = 15/75 (20%), Positives = 33/75 (44%)
 Frame = +3

Query: 48  FXSYFLLREIIMGRYSREPDNPAKSCKARGSNLRVHFKNTYETAMAIRKMPLRRAVRYLK 227
           F ++   ++ ++ + +   +   K C  RGS +R+H KN      +    P RR    + 
Sbjct: 520 FDNFTRTQKHVLAKMAERDEGTLKDCAQRGSFVRLHLKNVPTEIASKLVHPSRRLPVVVS 579

Query: 228 NVIEKKECIPFRRFN 272
            +++ +  I    F+
Sbjct: 580 GLLQHESKISVLHFS 594


>01_05_0279 + 20318440-20318688,20318785-20318931,20319449-20319611,
            20319770-20319887,20320607-20320676,20320774-20320854,
            20320924-20320959,20321129-20321149,20321586-20321642,
            20321716-20321827,20321905-20322178,20322454-20322556,
            20323244-20323459,20324615-20324665,20325339-20327963
          Length = 1440

 Score = 29.1 bits (62), Expect = 5.5
 Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
 Frame = +1

Query: 334  KKSAEFLLQLLRNAE--SNADNKTLDVDRLVIDHIQVNRAPCLR 459
            K   EF  Q+ + +E  S  + + L +  + I H+  + APCLR
Sbjct: 1033 KSKEEFFCQVYKGSEACSIENTRRLSIQNVSIQHLSGSSAPCLR 1076


>09_04_0308 + 16567361-16568854,16568946-16569068,16569372-16569649,
            16570316-16571924,16572363-16573781
          Length = 1640

 Score = 28.7 bits (61), Expect = 7.3
 Identities = 15/42 (35%), Positives = 20/42 (47%)
 Frame = -3

Query: 397  FCCQRLIQRSSITARGIRRISWASXPCVVPNCFA*AQRPTPP 272
            F C RL  +S+   RG+  I WA+   V P   A   +P  P
Sbjct: 1129 FNCHRLADKSNFKKRGLLGIEWAANGPVQPFIQAGPSKPKYP 1170


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,023,694
Number of Sequences: 37544
Number of extensions: 373354
Number of successful extensions: 830
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 794
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 829
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2788108120
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)