Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_N05
         (963 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_48345| Best HMM Match : Ribosomal_L22 (HMM E-Value=0)              113   2e-25
SB_5916| Best HMM Match : R3H (HMM E-Value=2.9e-10)                    30   2.4  

>SB_48345| Best HMM Match : Ribosomal_L22 (HMM E-Value=0)
          Length = 142

 Score =  113 bits (272), Expect = 2e-25
 Identities = 50/74 (67%), Positives = 63/74 (85%)
 Frame = +3

Query: 81  MGRYSREPDNPAKSCKARGSNLRVHFKNTYETAMAIRKMPLRRAVRYLKNVIEKKECIPF 260
           M RY+ +P+NP KSCKARGSNLRVH+KNT+E AMAI+ M +R+A RYLK+V  KK+ +PF
Sbjct: 1   MTRYATDPENPTKSCKARGSNLRVHYKNTHEAAMAIKGMHVRKANRYLKDVCAKKQLVPF 60

Query: 261 RRFNGGVGRCAQAK 302
           R++NGGVGR AQAK
Sbjct: 61  RKYNGGVGRKAQAK 74



 Score = 99.1 bits (236), Expect = 5e-21
 Identities = 45/56 (80%), Positives = 50/56 (89%)
 Frame = +1

Query: 325 RWPKKSAEFLLQLLRNAESNADNKTLDVDRLVIDHIQVNRAPCLRRRTYRAHGRIN 492
           RWPKKSAE LLQLL+NAESNA+ K LDVD LV++HIQVN AP +RRRTYRAHGRIN
Sbjct: 84  RWPKKSAEILLQLLKNAESNAEFKGLDVDSLVVEHIQVNEAPSMRRRTYRAHGRIN 139


>SB_5916| Best HMM Match : R3H (HMM E-Value=2.9e-10)
          Length = 798

 Score = 30.3 bits (65), Expect = 2.4
 Identities = 11/24 (45%), Positives = 18/24 (75%)
 Frame = -2

Query: 362 NCKRNSADFLGQRXLCCAKLLCLS 291
           +CK+N +  LGQ+ +CC ++ CLS
Sbjct: 712 SCKQNIS-LLGQKCVCCTRVFCLS 734


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,139,540
Number of Sequences: 59808
Number of extensions: 408346
Number of successful extensions: 903
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 825
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 902
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2836293838
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)