Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_N04
         (1033 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    30   0.61 
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    23   8.5  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    26   10.0 

>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 29.9 bits (64), Expect = 0.61
 Identities = 19/55 (34%), Positives = 23/55 (41%)
 Frame = +3

Query: 570  PTPTPRARLPHGSVAATRTPPXPXSLLXPPXCLRTATXASLXSXGSXXSAXPXSS 734
            P PTP A LP   V   + PP P      P    +   +S+ S  S  S  P SS
Sbjct: 1218 PVPTPSAGLPPVPVPTAKAPPVPAPSSEAPSV--STPRSSVPSPHSNASPSPTSS 1270



 Score = 27.9 bits (59), Expect = 2.5
 Identities = 16/55 (29%), Positives = 22/55 (40%)
 Frame = +3

Query: 561  RVLPTPTPRARLPHGSVAATRTPPXPXSLLXPPXCLRTATXASLXSXGSXXSAXP 725
            RV P P   ++ P   + +   PP P     PP  + T+T     S     SA P
Sbjct: 1010 RVPPVPKLSSKAPPVPLPSADAPPIPVPSTAPPVPIPTSTPPVPKSSSGAPSAPP 1064


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 22.6 bits (46), Expect(2) = 8.5
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = +1

Query: 718 PXPSPPPXPXPP 753
           P P+P P P PP
Sbjct: 742 PTPAPAPIPVPP 753



 Score = 21.4 bits (43), Expect(2) = 8.5
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = +1

Query: 730 PPPXPXPPSXXA 765
           PPP P PP+  A
Sbjct: 776 PPPPPPPPAVSA 787


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 25.8 bits (54), Expect = 10.0
 Identities = 9/21 (42%), Positives = 10/21 (47%)
 Frame = +1

Query: 718 PXPSPPPXPXPPSXXAPXHSP 780
           P  +PPP P PP    P   P
Sbjct: 5   PPGNPPPPPPPPGFEPPSQPP 25


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,043,467
Number of Sequences: 5004
Number of extensions: 23800
Number of successful extensions: 84
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 78
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 539240220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)