Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_N04
         (1033 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_2292| Best HMM Match : Extensin_2 (HMM E-Value=0.033)               33   9e-04
SB_21376| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.87 
SB_12366| Best HMM Match : SRCR (HMM E-Value=4.4e-33)                  31   1.5  
SB_2559| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   2.6  
SB_43066| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   3.5  
SB_36275| Best HMM Match : Extensin_2 (HMM E-Value=0.062)              29   4.6  
SB_32907| Best HMM Match : Gly_radical (HMM E-Value=6)                 29   4.6  
SB_54795| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.1  
SB_28396| Best HMM Match : RRM_1 (HMM E-Value=0.00035)                 29   6.1  
SB_26939| Best HMM Match : Drf_FH1 (HMM E-Value=9.2)                   29   8.1  
SB_50258| Best HMM Match : No HMM Matches (HMM E-Value=.)              24   8.7  

>SB_2292| Best HMM Match : Extensin_2 (HMM E-Value=0.033)
          Length = 867

 Score = 33.5 bits (73), Expect(2) = 9e-04
 Identities = 13/22 (59%), Positives = 13/22 (59%)
 Frame = +1

Query: 715 RPXPSPPPXPXPPSXXAPXHSP 780
           RP PSPPP P PPS   P   P
Sbjct: 210 RPPPSPPPPPPPPSPSPPRPPP 231



 Score = 27.5 bits (58), Expect(2) = 9e-04
 Identities = 13/36 (36%), Positives = 13/36 (36%)
 Frame = +1

Query: 898  PPPXRPPPSXYXXPRXXLXKSSPXXPSXPXFSHTXP 1005
            P P RPPP     P   L    P  P  P    T P
Sbjct: 224  PSPPRPPPPPPPSPPRPLAAKLPEPPPIPNMPPTLP 259


>SB_21376| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 290

 Score = 31.9 bits (69), Expect = 0.87
 Identities = 22/98 (22%), Positives = 28/98 (28%), Gaps = 2/98 (2%)
 Frame = +1

Query: 718  PXPSPPPXPXPPS--XXAPXHSPRXXXXXXXXXXXXXXXXXXXXXXXXXXVPRAXTXXXX 891
            P P PPP P PP+     P ++P                            P        
Sbjct: 101  PYPPPPPYPPPPNPPYPPPPNAPYPPPPNPPYPPPPNAPYPPSPNAPYPPPPNPPYPPPL 160

Query: 892  LXPPPXRPPPSXYXXPRXXLXKSSPXXPSXPXFSHTXP 1005
              PPP  PPP+    P       +P  P  P   +  P
Sbjct: 161  YPPPPNPPPPNAPYPPPPYPPPPNPPYPPPPNPPYPPP 198



 Score = 29.9 bits (64), Expect = 3.5
 Identities = 20/87 (22%), Positives = 24/87 (27%), Gaps = 1/87 (1%)
 Frame = +1

Query: 718 PXPSPPPXPXPPSXXAPXHSPRXXXXXXXXXXXXXXXXXXXXXXXXXXVPRAXTXXXXLX 897
           P P  PP P PP    P + P                            P   +      
Sbjct: 90  PNPPYPPPPYPPYPPPPPYPPPPNPPYPPPPNAPYPPPPNPPYPPPPNAPYPPSPNAPYP 149

Query: 898 PPPXRP-PPSXYXXPRXXLXKSSPXXP 975
           PPP  P PP  Y  P      ++P  P
Sbjct: 150 PPPNPPYPPPLYPPPPNPPPPNAPYPP 176


>SB_12366| Best HMM Match : SRCR (HMM E-Value=4.4e-33)
          Length = 457

 Score = 31.1 bits (67), Expect = 1.5
 Identities = 18/69 (26%), Positives = 19/69 (27%)
 Frame = +1

Query: 718 PXPSPPPXPXPPSXXAPXHSPRXXXXXXXXXXXXXXXXXXXXXXXXXXVPRAXTXXXXLX 897
           P P PPP P PPS   P   P                            P          
Sbjct: 365 PPPPPPPPPPPPSPPPPPPPPPPSPPPPPQPPPPPPPPPPPPPPPPPPPPPPPPAPPPPP 424

Query: 898 PPPXRPPPS 924
           PPP  PPP+
Sbjct: 425 PPPPPPPPA 433


>SB_2559| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1324

 Score = 30.3 bits (65), Expect = 2.6
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = +1

Query: 718  PXPSPPPXPXPPSXXAPXHSP 780
            P P PPP P PPS  +P   P
Sbjct: 1157 PPPPPPPPPPPPSSPSPPPPP 1177


>SB_43066| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 81

 Score = 29.9 bits (64), Expect = 3.5
 Identities = 11/21 (52%), Positives = 11/21 (52%)
 Frame = +1

Query: 718 PXPSPPPXPXPPSXXAPXHSP 780
           P P PPP P PP    P  SP
Sbjct: 55  PPPPPPPPPPPPPPPPPSSSP 75


>SB_36275| Best HMM Match : Extensin_2 (HMM E-Value=0.062)
          Length = 406

 Score = 29.5 bits (63), Expect = 4.6
 Identities = 15/40 (37%), Positives = 17/40 (42%)
 Frame = +3

Query: 519 HRXVSXLXXFPNXHRVLPTPTPRARLPHGSVAATRTPPXP 638
           H   S L   PN   + PTPTP   +P      T  PP P
Sbjct: 229 HIQASLLPLIPNTS-IPPTPTPHTSIPPTPTPHTSIPPTP 267


>SB_32907| Best HMM Match : Gly_radical (HMM E-Value=6)
          Length = 390

 Score = 29.5 bits (63), Expect = 4.6
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +3

Query: 570 PTPTPRARLPHGSVAATRTPPXP 638
           P PTPRAR P+ +  A R  P P
Sbjct: 29  PVPTPRARRPNPTTKARRPAPTP 51


>SB_54795| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1220

 Score = 29.1 bits (62), Expect = 6.1
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = +1

Query: 727 SPPPXPXPPSXXAPXHSP 780
           +PPP P PPS   P H P
Sbjct: 141 NPPPPPPPPSPPPPCHPP 158


>SB_28396| Best HMM Match : RRM_1 (HMM E-Value=0.00035)
          Length = 258

 Score = 29.1 bits (62), Expect = 6.1
 Identities = 23/74 (31%), Positives = 23/74 (31%)
 Frame = -3

Query: 938 GXXYXXGGGRXGGGXRXXXLVXARGTXRGGGXXXXXXXXXXXXXXXXXXGXXRGEWXGAX 759
           G  Y  GGG  GGG          G   GGG                  G   G   G  
Sbjct: 145 GGGYRGGGGYRGGGGGYRGRGRGGGGYGGGGYGGGGYGGGGHGGGGYGGGGYGG---GGG 201

Query: 758 XLGGXGLGGGXGXG 717
             GG G GGG G G
Sbjct: 202 GYGGSGYGGGGGYG 215


>SB_26939| Best HMM Match : Drf_FH1 (HMM E-Value=9.2)
          Length = 188

 Score = 28.7 bits (61), Expect = 8.1
 Identities = 10/13 (76%), Positives = 10/13 (76%)
 Frame = +1

Query: 718 PXPSPPPXPXPPS 756
           P PSPPP P PPS
Sbjct: 32  PPPSPPPSPPPPS 44



 Score = 28.7 bits (61), Expect = 8.1
 Identities = 10/13 (76%), Positives = 10/13 (76%)
 Frame = +1

Query: 718 PXPSPPPXPXPPS 756
           P PSPPP P PPS
Sbjct: 155 PPPSPPPSPPPPS 167


>SB_50258| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 795

 Score = 23.8 bits (49), Expect(2) = 8.7
 Identities = 12/38 (31%), Positives = 15/38 (39%)
 Frame = +1

Query: 892  LXPPPXRPPPSXYXXPRXXLXKSSPXXPSXPXFSHTXP 1005
            L PP   PP S +         S+P  PS P    + P
Sbjct: 732  LPPPDESPPSSKHPPTVSPSSSSAPPRPSTPPSVSSAP 769



 Score = 23.0 bits (47), Expect(2) = 8.7
 Identities = 9/19 (47%), Positives = 10/19 (52%)
 Frame = +1

Query: 724 PSPPPXPXPPSXXAPXHSP 780
           P P P P PP+     HSP
Sbjct: 698 PLPLPPPPPPTGIDIPHSP 716


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,093,628
Number of Sequences: 59808
Number of extensions: 226638
Number of successful extensions: 1555
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 669
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1290
length of database: 16,821,457
effective HSP length: 83
effective length of database: 11,857,393
effective search space used: 3082922180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)