Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_N03
         (928 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    23   4.5  
AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.     22   7.8  
AY873916-1|AAW67572.1|  377|Tribolium castaneum chitinase 6 prot...    22   7.8  
AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    22   7.8  

>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 22.6 bits (46), Expect = 4.5
 Identities = 11/23 (47%), Positives = 12/23 (52%)
 Frame = +2

Query: 227  PKTTTLMETATNLSTTVHITWTV 295
            P TT   +T T  STT   T TV
Sbjct: 1177 PSTTNHWQTKTTTSTTTRPTTTV 1199


>AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.
          Length = 697

 Score = 21.8 bits (44), Expect = 7.8
 Identities = 10/31 (32%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
 Frame = +1

Query: 175 SGNGYEPIDNR--PYIVNPPKDYNPNGNGYE 261
           S +G++  D    P+IV  P++ NP+   Y+
Sbjct: 179 SHSGFQRSDGTFGPFIVRVPEEDNPHAKLYD 209


>AY873916-1|AAW67572.1|  377|Tribolium castaneum chitinase 6
           protein.
          Length = 377

 Score = 21.8 bits (44), Expect = 7.8
 Identities = 8/10 (80%), Positives = 8/10 (80%)
 Frame = +3

Query: 768 SPSSXPPPPG 797
           SPSS P PPG
Sbjct: 273 SPSSGPAPPG 282


>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 21.8 bits (44), Expect = 7.8
 Identities = 10/27 (37%), Positives = 10/27 (37%)
 Frame = +1

Query: 760 GXXPLHXXXPPPGKXPXXXGXPXXFPP 840
           G  P H   PP G  P        FPP
Sbjct: 59  GIPPHHYGGPPSGGQPPQGMPYPRFPP 85


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 166,946
Number of Sequences: 336
Number of extensions: 3610
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 25961683
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)