Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP01_F_N01
(942 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_21376| Best HMM Match : No HMM Matches (HMM E-Value=.) 41 0.001
SB_12366| Best HMM Match : SRCR (HMM E-Value=4.4e-33) 34 0.19
SB_47784| Best HMM Match : Ank (HMM E-Value=1.4e-08) 31 1.8
SB_2292| Best HMM Match : Extensin_2 (HMM E-Value=0.033) 31 1.8
SB_52222| Best HMM Match : SAPS (HMM E-Value=2.1e-37) 30 3.1
SB_58757| Best HMM Match : GRP (HMM E-Value=0.0041) 29 7.2
SB_55393| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.5
SB_32600| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.5
SB_28396| Best HMM Match : RRM_1 (HMM E-Value=0.00035) 28 9.5
>SB_21376| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 290
Score = 41.1 bits (92), Expect = 0.001
Identities = 25/107 (23%), Positives = 26/107 (24%)
Frame = +3
Query: 609 PFPXXPPXXPPQTXXXPXXXXXXXXXXPXGGXPNPRXXXXXXXXXXXXXPXRXXXXXXXX 788
P+P PP PP P P P P P
Sbjct: 101 PYPPPPPYPPPPNPPYPPPPNAPYPPPPNPPYPPPPNAPYPPSPNAPYPPPPNPPYPPPL 160
Query: 789 XPXPPXPXPPPXXXXPXXXPXXXXXXXXPPPXXAXXXXPXXXXXPXP 929
P PP P PP P P PPP P P P
Sbjct: 161 YPPPPNPPPPNAPYPPPPYPPPPNPPYPPPPNPPYPPPPNAPNPPPP 207
Score = 32.7 bits (71), Expect = 0.44
Identities = 24/109 (22%), Positives = 24/109 (22%)
Frame = +3
Query: 603 PXPFPXXPPXXPPQTXXXPXXXXXXXXXXPXGGXPNPRXXXXXXXXXXXXXPXRXXXXXX 782
P P P PP PP P P P P
Sbjct: 123 PYPPPPNPPYPPPPNAPYPPSPNAPYPPPPNPPYPPPLYPPPPNPPPPNAPYPPPPYPPP 182
Query: 783 XXXPXPPXPXPPPXXXXPXXXPXXXXXXXXPPPXXAXXXXPXXXXXPXP 929
P PP P PP P PPP P P P
Sbjct: 183 PNPPYPPPPNPPYPPPPNAPNPPPPNPPYPPPPNAPNPPYPPPPNAPNP 231
Score = 32.7 bits (71), Expect = 0.44
Identities = 23/93 (24%), Positives = 23/93 (24%)
Frame = +3
Query: 603 PXPFPXXPPXXPPQTXXXPXXXXXXXXXXPXGGXPNPRXXXXXXXXXXXXXPXRXXXXXX 782
P P P PP PP P P P P P
Sbjct: 147 PYPPPPNPPYPPPLYPPPPNPPPPNAPYPPPPYPPPPNPPYPPPPNPPYPPPPNAPNPPP 206
Query: 783 XXXPXPPXPXPPPXXXXPXXXPXXXXXXXXPPP 881
P PP P PP P P PPP
Sbjct: 207 ---PNPPYPPPPNAPNPPYPPPPNAPNPPYPPP 236
Score = 30.7 bits (66), Expect = 1.8
Identities = 23/109 (21%), Positives = 23/109 (21%)
Frame = +3
Query: 603 PXPFPXXPPXXPPQTXXXPXXXXXXXXXXPXGGXPNPRXXXXXXXXXXXXXPXRXXXXXX 782
P P P P PP P P P P
Sbjct: 115 PYPPPPNAPYPPPPNPPYPPPPNAPYPPSPNAPYPPPPNPPYPPPLYPPPPNPPPPNAPY 174
Query: 783 XXXPXPPXPXPPPXXXXPXXXPXXXXXXXXPPPXXAXXXXPXXXXXPXP 929
P PP P PP P PPP P P P
Sbjct: 175 PPPPYPPPPNPPYPPPPNPPYPPPPNAPNPPPPNPPYPPPPNAPNPPYP 223
Score = 29.5 bits (63), Expect = 4.1
Identities = 15/47 (31%), Positives = 15/47 (31%), Gaps = 1/47 (2%)
Frame = +3
Query: 792 PXPPXPXPP-PXXXXPXXXPXXXXXXXXPPPXXAXXXXPXXXXXPXP 929
P PP P PP P P P PPP P P P
Sbjct: 90 PNPPYPPPPYPPYPPPPPYPPPPNPPYPPPPNAPYPPPPNPPYPPPP 136
Score = 29.5 bits (63), Expect = 4.1
Identities = 15/47 (31%), Positives = 15/47 (31%), Gaps = 1/47 (2%)
Frame = +3
Query: 792 PXPPXPXPPPXXXXP-XXXPXXXXXXXXPPPXXAXXXXPXXXXXPXP 929
P PP P PPP P P PPP P P P
Sbjct: 98 PYPPYPPPPPYPPPPNPPYPPPPNAPYPPPPNPPYPPPPNAPYPPSP 144
Score = 29.5 bits (63), Expect = 4.1
Identities = 14/46 (30%), Positives = 14/46 (30%)
Frame = +1
Query: 793 PXPXXPPXPPXXXXPXXXXXXXPXXXPPXPXGXXXXSXXPXXXPXP 930
P P PP PP P P PP P P P P
Sbjct: 125 PPPPNPPYPPPPNAPYPPSPNAPYPPPPNPPYPPPLYPPPPNPPPP 170
>SB_12366| Best HMM Match : SRCR (HMM E-Value=4.4e-33)
Length = 457
Score = 33.9 bits (74), Expect = 0.19
Identities = 15/46 (32%), Positives = 15/46 (32%)
Frame = +3
Query: 792 PXPPXPXPPPXXXXPXXXPXXXXXXXXPPPXXAXXXXPXXXXXPXP 929
P PP P PPP P P PPP P P P
Sbjct: 371 PPPPPPSPPPPPPPPPPSPPPPPQPPPPPPPPPPPPPPPPPPPPPP 416
Score = 33.9 bits (74), Expect = 0.19
Identities = 15/46 (32%), Positives = 15/46 (32%)
Frame = +3
Query: 792 PXPPXPXPPPXXXXPXXXPXXXXXXXXPPPXXAXXXXPXXXXXPXP 929
P PP P PPP P P PPP P P P
Sbjct: 373 PPPPSPPPPPPPPPPSPPPPPQPPPPPPPPPPPPPPPPPPPPPPPP 418
Score = 33.9 bits (74), Expect = 0.19
Identities = 15/46 (32%), Positives = 15/46 (32%)
Frame = +3
Query: 792 PXPPXPXPPPXXXXPXXXPXXXXXXXXPPPXXAXXXXPXXXXXPXP 929
P PP P PPP P P PPP P P P
Sbjct: 378 PPPPPPPPPPSPPPPPQPPPPPPPPPPPPPPPPPPPPPPPPAPPPP 423
Score = 33.9 bits (74), Expect = 0.19
Identities = 15/46 (32%), Positives = 15/46 (32%)
Frame = +3
Query: 792 PXPPXPXPPPXXXXPXXXPXXXXXXXXPPPXXAXXXXPXXXXXPXP 929
P PP P PPP P P PPP P P P
Sbjct: 384 PPPPSPPPPPQPPPPPPPPPPPPPPPPPPPPPPPPAPPPPPPPPPP 429
Score = 32.7 bits (71), Expect = 0.44
Identities = 15/46 (32%), Positives = 15/46 (32%)
Frame = +3
Query: 792 PXPPXPXPPPXXXXPXXXPXXXXXXXXPPPXXAXXXXPXXXXXPXP 929
P PP P PP P P PPP A P P P
Sbjct: 387 PSPPPPPQPPPPPPPPPPPPPPPPPPPPPPPPAPPPPPPPPPPPPP 432
Score = 31.5 bits (68), Expect = 1.0
Identities = 14/44 (31%), Positives = 14/44 (31%)
Frame = +3
Query: 798 PPXPXPPPXXXXPXXXPXXXXXXXXPPPXXAXXXXPXXXXXPXP 929
PP P PPP P P PPP P P P
Sbjct: 366 PPPPPPPPPPPSPPPPPPPPPPSPPPPPQPPPPPPPPPPPPPPP 409
Score = 30.7 bits (66), Expect = 1.8
Identities = 14/46 (30%), Positives = 14/46 (30%)
Frame = +3
Query: 792 PXPPXPXPPPXXXXPXXXPXXXXXXXXPPPXXAXXXXPXXXXXPXP 929
P PP P PPP P P PP P P P
Sbjct: 365 PPPPPPPPPPPPSPPPPPPPPPPSPPPPPQPPPPPPPPPPPPPPPP 410
Score = 30.7 bits (66), Expect = 1.8
Identities = 14/46 (30%), Positives = 14/46 (30%)
Frame = +3
Query: 792 PXPPXPXPPPXXXXPXXXPXXXXXXXXPPPXXAXXXXPXXXXXPXP 929
P PP P PPP P P P P P P P
Sbjct: 366 PPPPPPPPPPPSPPPPPPPPPPSPPPPPQPPPPPPPPPPPPPPPPP 411
Score = 30.7 bits (66), Expect = 1.8
Identities = 14/46 (30%), Positives = 14/46 (30%)
Frame = +3
Query: 792 PXPPXPXPPPXXXXPXXXPXXXXXXXXPPPXXAXXXXPXXXXXPXP 929
P PP P PPP P P PP P P P
Sbjct: 367 PPPPPPPPPPSPPPPPPPPPPSPPPPPQPPPPPPPPPPPPPPPPPP 412
Score = 30.7 bits (66), Expect = 1.8
Identities = 14/46 (30%), Positives = 14/46 (30%)
Frame = +3
Query: 792 PXPPXPXPPPXXXXPXXXPXXXXXXXXPPPXXAXXXXPXXXXXPXP 929
P PP P PP P P PPP P P P
Sbjct: 368 PPPPPPPPPSPPPPPPPPPPSPPPPPQPPPPPPPPPPPPPPPPPPP 413
Score = 30.7 bits (66), Expect = 1.8
Identities = 14/46 (30%), Positives = 14/46 (30%)
Frame = +3
Query: 792 PXPPXPXPPPXXXXPXXXPXXXXXXXXPPPXXAXXXXPXXXXXPXP 929
P PP P P P P P PPP P P P
Sbjct: 369 PPPPPPPPSPPPPPPPPPPSPPPPPQPPPPPPPPPPPPPPPPPPPP 414
Score = 30.7 bits (66), Expect = 1.8
Identities = 14/46 (30%), Positives = 14/46 (30%)
Frame = +3
Query: 792 PXPPXPXPPPXXXXPXXXPXXXXXXXXPPPXXAXXXXPXXXXXPXP 929
P PP PPP P P PPP P P P
Sbjct: 372 PPPPPSPPPPPPPPPPSPPPPPQPPPPPPPPPPPPPPPPPPPPPPP 417
Score = 30.7 bits (66), Expect = 1.8
Identities = 14/46 (30%), Positives = 14/46 (30%)
Frame = +3
Query: 792 PXPPXPXPPPXXXXPXXXPXXXXXXXXPPPXXAXXXXPXXXXXPXP 929
P P P PPP P P PPP P P P
Sbjct: 375 PPSPPPPPPPPPPSPPPPPQPPPPPPPPPPPPPPPPPPPPPPPPAP 420
Score = 30.7 bits (66), Expect = 1.8
Identities = 14/46 (30%), Positives = 14/46 (30%)
Frame = +3
Query: 792 PXPPXPXPPPXXXXPXXXPXXXXXXXXPPPXXAXXXXPXXXXXPXP 929
P PP P PP P P PPP P P P
Sbjct: 379 PPPPPPPPPSPPPPPQPPPPPPPPPPPPPPPPPPPPPPPPAPPPPP 424
Score = 30.7 bits (66), Expect = 1.8
Identities = 14/46 (30%), Positives = 14/46 (30%)
Frame = +3
Query: 792 PXPPXPXPPPXXXXPXXXPXXXXXXXXPPPXXAXXXXPXXXXXPXP 929
P PP P PP P P PPP P P P
Sbjct: 381 PPPPPPPSPPPPPQPPPPPPPPPPPPPPPPPPPPPPPPAPPPPPPP 426
Score = 30.7 bits (66), Expect = 1.8
Identities = 14/46 (30%), Positives = 14/46 (30%)
Frame = +3
Query: 792 PXPPXPXPPPXXXXPXXXPXXXXXXXXPPPXXAXXXXPXXXXXPXP 929
P PP PPP P P PPP P P P
Sbjct: 383 PPPPPSPPPPPQPPPPPPPPPPPPPPPPPPPPPPPPAPPPPPPPPP 428
Score = 30.7 bits (66), Expect = 1.8
Identities = 15/50 (30%), Positives = 15/50 (30%)
Frame = +1
Query: 793 PXPXXPPXPPXXXXPXXXXXXXPXXXPPXPXGXXXXSXXPXXXPXPXXXL 942
P P PP PP P P PP P P P P L
Sbjct: 387 PSPPPPPQPPPPPPPPPPPPPPPPPPPPPPPPAPPPPPPPPPPPPPALRL 436
Score = 30.3 bits (65), Expect = 2.4
Identities = 14/46 (30%), Positives = 14/46 (30%)
Frame = +1
Query: 793 PXPXXPPXPPXXXXPXXXXXXXPXXXPPXPXGXXXXSXXPXXXPXP 930
P P PP PP P P PP P P P P
Sbjct: 370 PPPPPPPSPPPPPPPPPPSPPPPPQPPPPPPPPPPPPPPPPPPPPP 415
Score = 30.3 bits (65), Expect = 2.4
Identities = 14/46 (30%), Positives = 14/46 (30%)
Frame = +1
Query: 793 PXPXXPPXPPXXXXPXXXXXXXPXXXPPXPXGXXXXSXXPXXXPXP 930
P P PP PP P P PP P P P P
Sbjct: 373 PPPPSPPPPPPPPPPSPPPPPQPPPPPPPPPPPPPPPPPPPPPPPP 418
Score = 30.3 bits (65), Expect = 2.4
Identities = 14/46 (30%), Positives = 14/46 (30%)
Frame = +1
Query: 793 PXPXXPPXPPXXXXPXXXXXXXPXXXPPXPXGXXXXSXXPXXXPXP 930
P P PP PP P P PP P P P P
Sbjct: 378 PPPPPPPPPPSPPPPPQPPPPPPPPPPPPPPPPPPPPPPPPAPPPP 423
Score = 30.3 bits (65), Expect = 2.4
Identities = 14/46 (30%), Positives = 14/46 (30%)
Frame = +1
Query: 793 PXPXXPPXPPXXXXPXXXXXXXPXXXPPXPXGXXXXSXXPXXXPXP 930
P P PP PP P P PP P P P P
Sbjct: 381 PPPPPPPSPPPPPQPPPPPPPPPPPPPPPPPPPPPPPPAPPPPPPP 426
Score = 30.3 bits (65), Expect = 2.4
Identities = 14/46 (30%), Positives = 14/46 (30%)
Frame = +1
Query: 793 PXPXXPPXPPXXXXPXXXXXXXPXXXPPXPXGXXXXSXXPXXXPXP 930
P P PP PP P P PP P P P P
Sbjct: 384 PPPPSPPPPPQPPPPPPPPPPPPPPPPPPPPPPPPAPPPPPPPPPP 429
Score = 28.3 bits (60), Expect = 9.5
Identities = 12/33 (36%), Positives = 12/33 (36%)
Frame = +3
Query: 792 PXPPXPXPPPXXXXPXXXPXXXXXXXXPPPXXA 890
P PP P PPP P PPP A
Sbjct: 401 PPPPPPPPPPPPPPPPPPAPPPPPPPPPPPPPA 433
>SB_47784| Best HMM Match : Ank (HMM E-Value=1.4e-08)
Length = 593
Score = 30.7 bits (66), Expect = 1.8
Identities = 12/30 (40%), Positives = 12/30 (40%)
Frame = +3
Query: 792 PXPPXPXPPPXXXXPXXXPXXXXXXXXPPP 881
P PP P PPP P P PPP
Sbjct: 464 PPPPPPPPPPPPPPPPPPPPPPPPFPPPPP 493
Score = 30.7 bits (66), Expect = 1.8
Identities = 12/30 (40%), Positives = 12/30 (40%)
Frame = +3
Query: 792 PXPPXPXPPPXXXXPXXXPXXXXXXXXPPP 881
P PP P PPP P P PPP
Sbjct: 465 PPPPPPPPPPPPPPPPPPPPPPPFPPPPPP 494
>SB_2292| Best HMM Match : Extensin_2 (HMM E-Value=0.033)
Length = 867
Score = 30.7 bits (66), Expect = 1.8
Identities = 12/30 (40%), Positives = 12/30 (40%)
Frame = +3
Query: 792 PXPPXPXPPPXXXXPXXXPXXXXXXXXPPP 881
P PP P PPP P P PPP
Sbjct: 204 PPPPPPRPPPSPPPPPPPPSPSPPRPPPPP 233
Score = 23.8 bits (49), Expect(2) = 7.8
Identities = 11/37 (29%), Positives = 11/37 (29%)
Frame = +3
Query: 603 PXPFPXXPPXXPPQTXXXPXXXXXXXXXXPXGGXPNP 713
P P P PP PP P P P P
Sbjct: 204 PPPPPPRPPPSPPPPPPPPSPSPPRPPPPPPPSPPRP 240
Score = 23.0 bits (47), Expect(2) = 7.8
Identities = 10/30 (33%), Positives = 10/30 (33%)
Frame = +3
Query: 792 PXPPXPXPPPXXXXPXXXPXXXXXXXXPPP 881
P PP P P P P PPP
Sbjct: 232 PPPPSPPRPLAAKLPEPPPIPNMPPTLPPP 261
>SB_52222| Best HMM Match : SAPS (HMM E-Value=2.1e-37)
Length = 1063
Score = 29.9 bits (64), Expect = 3.1
Identities = 24/93 (25%), Positives = 24/93 (25%)
Frame = -3
Query: 880 GGGXXXXXXXXGXXXGXXXXGGGXGXGGXGXXXXXXXXXRXGXXXXXXXXXXXXXRGLGX 701
GGG G G GGG G GG G G G G
Sbjct: 771 GGGGDGGDGGGGGDGGGGGGGGGGGGGGGGGGDGGGYGDGDGGGGGGGGGGGGGGDGGGY 830
Query: 700 PPXGXXXXXXXXXXGXKXVWGGXXGGXXGKGXG 602
G G GG GG G G G
Sbjct: 831 GDGGGFGDGGGYADGDGGGGGGGGGGGGGGGGG 863
Score = 28.3 bits (60), Expect = 9.5
Identities = 15/46 (32%), Positives = 15/46 (32%)
Frame = -3
Query: 928 GXGXXXXXGXXXXAXXGGGXXXXXXXXGXXXGXXXXGGGXGXGGXG 791
G G G GGG G G GGG G GG G
Sbjct: 777 GDGGGGGDGGGGGGGGGGGGGGGGGGDGGGYGDGDGGGGGGGGGGG 822
Score = 28.3 bits (60), Expect = 9.5
Identities = 15/46 (32%), Positives = 15/46 (32%)
Frame = -3
Query: 928 GXGXXXXXGXXXXAXXGGGXXXXXXXXGXXXGXXXXGGGXGXGGXG 791
G G G GGG G G GGG G GG G
Sbjct: 779 GGGGGDGGGGGGGGGGGGGGGGGGDGGGYGDGDGGGGGGGGGGGGG 824
>SB_58757| Best HMM Match : GRP (HMM E-Value=0.0041)
Length = 154
Score = 28.7 bits (61), Expect = 7.2
Identities = 17/58 (29%), Positives = 17/58 (29%)
Frame = -3
Query: 928 GXGXXXXXGXXXXAXXGGGXXXXXXXXGXXXGXXXXGGGXGXGGXGXXXXXXXXXRXG 755
G G G GGG G G GGG G GG G R G
Sbjct: 62 GGGGGGGGGGGGGGGGGGGGGGDDGDGGGGDGGGGGGGGDGGGGGGGGGGGVGRARFG 119
>SB_55393| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1597
Score = 28.3 bits (60), Expect = 9.5
Identities = 11/28 (39%), Positives = 11/28 (39%)
Frame = +3
Query: 798 PPXPXPPPXXXXPXXXPXXXXXXXXPPP 881
PP P PPP P P PPP
Sbjct: 683 PPPPPPPPPPPPPPPPPPPQPSTPPPPP 710
Score = 28.3 bits (60), Expect = 9.5
Identities = 11/28 (39%), Positives = 11/28 (39%)
Frame = +3
Query: 798 PPXPXPPPXXXXPXXXPXXXXXXXXPPP 881
PP P PPP P P PPP
Sbjct: 684 PPPPPPPPPPPPPPPPPPQPSTPPPPPP 711
>SB_32600| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1572
Score = 28.3 bits (60), Expect = 9.5
Identities = 23/92 (25%), Positives = 24/92 (26%), Gaps = 1/92 (1%)
Frame = +3
Query: 609 PFPXXPPXXPPQTXXXPXXXXXXXXXXPXGGXPNPRXXXXXXXXXXXXXPXRXXXXXXXX 788
P P PP P P P G P+PR P
Sbjct: 477 PHPRVPPPGAPHPRVPPPGAPHQRVPPP--GAPHPRVPPPGAPHPRVPPPGAPHPRVPP- 533
Query: 789 XPXPPXPX-PPPXXXXPXXXPXXXXXXXXPPP 881
P P P PPP P P PPP
Sbjct: 534 -PGAPHPRVPPPGAPHPRVPPPGASHPRVPPP 564
Score = 28.3 bits (60), Expect = 9.5
Identities = 23/92 (25%), Positives = 24/92 (26%), Gaps = 1/92 (1%)
Frame = +3
Query: 609 PFPXXPPXXPPQTXXXPXXXXXXXXXXPXGGXPNPRXXXXXXXXXXXXXPXRXXXXXXXX 788
P P PP P P P G P+PR P
Sbjct: 487 PHPRVPPPGAPHQRVPPPGAPHPRVPPP--GAPHPRVPPPGAPHPRVPPPGAPHPRVPP- 543
Query: 789 XPXPPXPX-PPPXXXXPXXXPXXXXXXXXPPP 881
P P P PPP P P PPP
Sbjct: 544 -PGAPHPRVPPPGASHPRVPPPGAPHPRVPPP 574
Score = 28.3 bits (60), Expect = 9.5
Identities = 23/92 (25%), Positives = 24/92 (26%), Gaps = 1/92 (1%)
Frame = +3
Query: 609 PFPXXPPXXPPQTXXXPXXXXXXXXXXPXGGXPNPRXXXXXXXXXXXXXPXRXXXXXXXX 788
P P PP P P P G P+PR P
Sbjct: 507 PHPRVPPPGAPHPRVPPPGAPHPRVPPP--GAPHPRVPPPGAPHPRVPPPGASHPRVPP- 563
Query: 789 XPXPPXPX-PPPXXXXPXXXPXXXXXXXXPPP 881
P P P PPP P P PPP
Sbjct: 564 -PGAPHPRVPPPGAPHPRVPPPGTPHPRVPPP 594
Score = 28.3 bits (60), Expect = 9.5
Identities = 23/92 (25%), Positives = 24/92 (26%), Gaps = 1/92 (1%)
Frame = +3
Query: 609 PFPXXPPXXPPQTXXXPXXXXXXXXXXPXGGXPNPRXXXXXXXXXXXXXPXRXXXXXXXX 788
P P PP P P P G P+PR P
Sbjct: 517 PHPRVPPPGAPHPRVPPPGAPHPRVPPP--GAPHPRVPPPGASHPRVPPPGAPHPRVPP- 573
Query: 789 XPXPPXPX-PPPXXXXPXXXPXXXXXXXXPPP 881
P P P PPP P P PPP
Sbjct: 574 -PGAPHPRVPPPGTPHPRVPPPGAPHPKVPPP 604
>SB_28396| Best HMM Match : RRM_1 (HMM E-Value=0.00035)
Length = 258
Score = 28.3 bits (60), Expect = 9.5
Identities = 15/46 (32%), Positives = 15/46 (32%)
Frame = -3
Query: 928 GXGXXXXXGXXXXAXXGGGXXXXXXXXGXXXGXXXXGGGXGXGGXG 791
G G G GGG G G GGG G GG G
Sbjct: 157 GGGGYRGRGRGGGGYGGGGYGGGGYGGGGHGGGGYGGGGYGGGGGG 202
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,542,495
Number of Sequences: 59808
Number of extensions: 164431
Number of successful extensions: 1181
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 260
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 700
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2752873431
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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