Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_N01
         (942 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC034003-1|AAH34003.1|  600|Homo sapiens PRR12 protein protein.        34   0.86 
AB033031-1|BAA86519.1| 1217|Homo sapiens KIAA1205 protein protein.     34   0.86 
X67337-1|CAA47752.1|  551|Homo sapiens Human pre-mRNA cleavage f...    31   4.6  
X67336-1|CAA47751.1|  551|Homo sapiens HPBRII-7 protein.               31   4.6  
AK223568-1|BAD97288.1|  551|Homo sapiens cleavage and polyadenyl...    31   4.6  
BC038446-1|AAH38446.1|  673|Homo sapiens SF1 protein protein.          31   8.0  

>BC034003-1|AAH34003.1|  600|Homo sapiens PRR12 protein protein.
          Length = 600

 Score = 33.9 bits (74), Expect = 0.86
 Identities = 15/46 (32%), Positives = 15/46 (32%)
 Frame = +3

Query: 792 PXPPXPXPPPXXXXPXXXPXXXXXXXXPPPXXAXXXXPXXXXXPXP 929
           P PP P PPP    P   P        PPP       P     P P
Sbjct: 105 PQPPPPPPPPQPALPSPPPLVAPTPSSPPPPPLPPPPPPAMPSPPP 150


>AB033031-1|BAA86519.1| 1217|Homo sapiens KIAA1205 protein protein.
          Length = 1217

 Score = 33.9 bits (74), Expect = 0.86
 Identities = 15/46 (32%), Positives = 15/46 (32%)
 Frame = +3

Query: 792 PXPPXPXPPPXXXXPXXXPXXXXXXXXPPPXXAXXXXPXXXXXPXP 929
           P PP P PPP    P   P        PPP       P     P P
Sbjct: 650 PQPPPPPPPPQPALPSPPPLVAPTPSSPPPPPLPPPPPPAMPSPPP 695


>X67337-1|CAA47752.1|  551|Homo sapiens Human pre-mRNA cleavage
           factor I 68 kDa subunit protein.
          Length = 551

 Score = 31.5 bits (68), Expect = 4.6
 Identities = 28/117 (23%), Positives = 28/117 (23%), Gaps = 5/117 (4%)
 Frame = +3

Query: 588 GXXGXPXPFPXX-----PPXXPPQTXXXPXXXXXXXXXXPXGGXPNPRXXXXXXXXXXXX 752
           G  G P PFP       PP  PP     P          P    P  R            
Sbjct: 222 GPGGPPPPFPAGQTPPRPPLGPPGPPGPPGPPPPGQVLPPPLAGPPNRGDRPPPPVLFPG 281

Query: 753 XPXRXXXXXXXXXPXPPXPXPPPXXXXPXXXPXXXXXXXXPPPXXAXXXXPXXXXXP 923
            P           P PP P PP     P   P        PPP       P     P
Sbjct: 282 QPF----GQPPLGPLPPGPPPPVPGYGPPPGPPPPQQGPPPPPGPFPPRPPGPLGPP 334


>X67336-1|CAA47751.1|  551|Homo sapiens HPBRII-7 protein.
          Length = 551

 Score = 31.5 bits (68), Expect = 4.6
 Identities = 28/117 (23%), Positives = 28/117 (23%), Gaps = 5/117 (4%)
 Frame = +3

Query: 588 GXXGXPXPFPXX-----PPXXPPQTXXXPXXXXXXXXXXPXGGXPNPRXXXXXXXXXXXX 752
           G  G P PFP       PP  PP     P          P    P  R            
Sbjct: 222 GPGGPPPPFPAGQTPPRPPLGPPGPPGPPGPPPPGQVLPPPLAGPPNRGDRPPPPVLFPG 281

Query: 753 XPXRXXXXXXXXXPXPPXPXPPPXXXXPXXXPXXXXXXXXPPPXXAXXXXPXXXXXP 923
            P           P PP P PP     P   P        PPP       P     P
Sbjct: 282 QPF----GQPPLGPLPPGPPPPVPGYGPPPGPPPPQQGPPPPPGPFPPRPPGPLGPP 334


>AK223568-1|BAD97288.1|  551|Homo sapiens cleavage and
           polyadenylation specific factor 6, 68 kD subunit variant
           protein.
          Length = 551

 Score = 31.5 bits (68), Expect = 4.6
 Identities = 28/117 (23%), Positives = 28/117 (23%), Gaps = 5/117 (4%)
 Frame = +3

Query: 588 GXXGXPXPFPXX-----PPXXPPQTXXXPXXXXXXXXXXPXGGXPNPRXXXXXXXXXXXX 752
           G  G P PFP       PP  PP     P          P    P  R            
Sbjct: 222 GPGGPPPPFPAGQTPPRPPLGPPGPPGPPGPPPPGQVLPPPLAGPPNRGDRPPPPVLFPG 281

Query: 753 XPXRXXXXXXXXXPXPPXPXPPPXXXXPXXXPXXXXXXXXPPPXXAXXXXPXXXXXP 923
            P           P PP P PP     P   P        PPP       P     P
Sbjct: 282 QPF----GQPPLGPLPPGPPPPVPGYGPPPGPPPPQQGPPPPPGPFPPRPPGPLGPP 334


>BC038446-1|AAH38446.1|  673|Homo sapiens SF1 protein protein.
          Length = 673

 Score = 30.7 bits (66), Expect = 8.0
 Identities = 12/30 (40%), Positives = 12/30 (40%)
 Frame = +3

Query: 792 PXPPXPXPPPXXXXPXXXPXXXXXXXXPPP 881
           P PP P PPP    P   P        PPP
Sbjct: 70  PPPPPPPPPPPQQPPPPPPPPSPGASYPPP 99


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 66,456,098
Number of Sequences: 237096
Number of extensions: 1249803
Number of successful extensions: 7004
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5487
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 12381054106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)