Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_N01
         (942 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40799-6|AAA81484.2|  210|Caenorhabditis elegans Ground-like (gr...    29   4.8  
U58751-5|AAN84882.1|  781|Caenorhabditis elegans Wasp (actin cyt...    29   6.4  
U58751-4|AAN84881.1|  607|Caenorhabditis elegans Wasp (actin cyt...    29   6.4  
Z81053-1|CAB02877.1|  385|Caenorhabditis elegans Hypothetical pr...    28   8.4  
AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical ...    28   8.4  

>U40799-6|AAA81484.2|  210|Caenorhabditis elegans Ground-like (grd
           related) protein 4 protein.
          Length = 210

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 13/42 (30%), Positives = 13/42 (30%)
 Frame = +3

Query: 798 PPXPXPPPXXXXPXXXPXXXXXXXXPPPXXAXXXXPXXXXXP 923
           PP P PPP    P   P        PPP       P     P
Sbjct: 41  PPLPCPPPPICPPQFCPPPPMCPPPPPPPPPPMCPPPPPPMP 82


>U58751-5|AAN84882.1|  781|Caenorhabditis elegans Wasp (actin
           cytoskeleton modulator)homolog protein 1, isoform b
           protein.
          Length = 781

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 21/92 (22%), Positives = 23/92 (25%)
 Frame = +3

Query: 615 PXXPPXXPPQTXXXPXXXXXXXXXXPXGGXPNPRXXXXXXXXXXXXXPXRXXXXXXXXXP 794
           P  PP  PP +              P  G P  R             P +          
Sbjct: 571 PARPPPPPPSSGTRGIAPSRPLPQAPNYGTPENRPHAVPPPPPPP--PPQSFGMAPISSA 628

Query: 795 XPPXPXPPPXXXXPXXXPXXXXXXXXPPPXXA 890
            PP P PPP    P            PPP  A
Sbjct: 629 APPPPPPPPPMGLPAVGAGAPPPPPPPPPSGA 660


>U58751-4|AAN84881.1|  607|Caenorhabditis elegans Wasp (actin
           cytoskeleton modulator)homolog protein 1, isoform a
           protein.
          Length = 607

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 21/92 (22%), Positives = 23/92 (25%)
 Frame = +3

Query: 615 PXXPPXXPPQTXXXPXXXXXXXXXXPXGGXPNPRXXXXXXXXXXXXXPXRXXXXXXXXXP 794
           P  PP  PP +              P  G P  R             P +          
Sbjct: 397 PARPPPPPPSSGTRGIAPSRPLPQAPNYGTPENRPHAVPPPPPPP--PPQSFGMAPISSA 454

Query: 795 XPPXPXPPPXXXXPXXXPXXXXXXXXPPPXXA 890
            PP P PPP    P            PPP  A
Sbjct: 455 APPPPPPPPPMGLPAVGAGAPPPPPPPPPSGA 486


>Z81053-1|CAB02877.1|  385|Caenorhabditis elegans Hypothetical
           protein E02A10.2 protein.
          Length = 385

 Score = 28.3 bits (60), Expect = 8.4
 Identities = 15/46 (32%), Positives = 15/46 (32%)
 Frame = -3

Query: 928 GXGXXXXXGXXXXAXXGGGXXXXXXXXGXXXGXXXXGGGXGXGGXG 791
           G G     G       GGG        G   G    GGG G GG G
Sbjct: 137 GGGGCGGGGGGGCGGGGGGCGGGGGGCGGGGGGCGGGGGGGCGGGG 182


>AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical
            protein F59E12.9 protein.
          Length = 1621

 Score = 28.3 bits (60), Expect = 8.4
 Identities = 13/44 (29%), Positives = 14/44 (31%)
 Frame = +1

Query: 799  PXXPPXPPXXXXPXXXXXXXPXXXPPXPXGXXXXSXXPXXXPXP 930
            P  PP PP    P       P   PP P      +  P   P P
Sbjct: 1336 PSPPPPPPPPPPPSDDLTPVPPPPPPPPTMSKAPTGVPLPVPPP 1379


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,556,859
Number of Sequences: 27780
Number of extensions: 159754
Number of successful extensions: 759
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 309
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 608
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2433684176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)