Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_M23
         (967 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    23   4.7  
AY769607-1|AAV40983.1|  196|Tribolium castaneum heat shock cogna...    23   4.7  
AY769606-1|AAV40982.1|  196|Tribolium castaneum heat shock prote...    23   4.7  

>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 22.6 bits (46), Expect = 4.7
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = -1

Query: 937 GGGXGXGXXGXXXGGGG 887
           GGG G G  G    GGG
Sbjct: 92  GGGRGGGRDGDRGDGGG 108


>AY769607-1|AAV40983.1|  196|Tribolium castaneum heat shock cognate
           70 protein.
          Length = 196

 Score = 22.6 bits (46), Expect = 4.7
 Identities = 14/51 (27%), Positives = 24/51 (47%)
 Frame = +1

Query: 274 RQALDXLRHVLEAGGASLESVVKTTVLLA*HGRLPNFQQSLCXIFS*SLPC 426
           ++ +D +  VL+      +S V   VL+    R+P  QQ +   F+   PC
Sbjct: 139 KKCIDPVDKVLQDAKIG-KSAVHEIVLVGGSTRIPKVQQLITEYFNGKEPC 188


>AY769606-1|AAV40982.1|  196|Tribolium castaneum heat shock protein
           70 protein.
          Length = 196

 Score = 22.6 bits (46), Expect = 4.7
 Identities = 14/51 (27%), Positives = 24/51 (47%)
 Frame = +1

Query: 274 RQALDXLRHVLEAGGASLESVVKTTVLLA*HGRLPNFQQSLCXIFS*SLPC 426
           ++ +D +  VL+      +S V   VL+    R+P  QQ +   F+   PC
Sbjct: 139 KKCIDPVDKVLQDAKIG-KSAVHEIVLVGGSTRIPKVQQLITEYFNGKEPC 188


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 181,609
Number of Sequences: 336
Number of extensions: 4013
Number of successful extensions: 15
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 27306312
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)