Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_M22
         (954 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       29   0.082
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    26   0.58 
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    23   3.1  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   7.1  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    22   9.4  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            22   9.4  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 28.7 bits (61), Expect = 0.082
 Identities = 13/43 (30%), Positives = 15/43 (34%)
 Frame = +3

Query: 801 PFPXPXPTXPPXPXPXPPXXRPPPXXXXXXPPAPXPXPHXLPP 929
           P P   P  P    P  P   PPP      PP+  P    + P
Sbjct: 25  PSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPPSQNPSQMMISP 67



 Score = 23.0 bits (47), Expect = 4.1
 Identities = 10/32 (31%), Positives = 10/32 (31%)
 Frame = +3

Query: 813 PXPTXPPXPXPXPPXXRPPPXXXXXXPPAPXP 908
           P P   P   P  P    PP      PP   P
Sbjct: 21  PGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPP 52



 Score = 22.6 bits (46), Expect = 5.4
 Identities = 8/19 (42%), Positives = 8/19 (42%)
 Frame = +3

Query: 894 PAPXPXPHXLPPXPXXXXP 950
           P P P PH  P  P    P
Sbjct: 21  PGPQPSPHQSPQAPQRGSP 39



 Score = 22.6 bits (46), Expect = 5.4
 Identities = 9/24 (37%), Positives = 10/24 (41%)
 Frame = +1

Query: 865 PXPXGXPXPPXPPPPXPTXSPPXP 936
           P   G P PP P     +  PP P
Sbjct: 410 PPSAGAPMPPIPNMSNMSGMPPLP 433


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 25.8 bits (54), Expect = 0.58
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = +1

Query: 883 PXPPXPPPPXPTXSPP 930
           P  P PPPP P+ S P
Sbjct: 338 PPKPAPPPPPPSSSGP 353



 Score = 22.6 bits (46), Expect = 5.4
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +2

Query: 920 PPPXXPPPPP 949
           PP   PPPPP
Sbjct: 338 PPKPAPPPPP 347



 Score = 22.6 bits (46), Expect = 5.4
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +2

Query: 920 PPPXXPPPPP 949
           P P  PPPPP
Sbjct: 339 PKPAPPPPPP 348



 Score = 22.2 bits (45), Expect = 7.1
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = +1

Query: 889 PPXPPPPXPTXSPPXP 936
           PP P PP P  S   P
Sbjct: 338 PPKPAPPPPPPSSSGP 353


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 23.4 bits (48), Expect = 3.1
 Identities = 11/31 (35%), Positives = 12/31 (38%)
 Frame = -3

Query: 898 AGGXXXXXXGGGRXXGGXGXGXGGXVGXGXG 806
           AGG      GG    G    G GG +G   G
Sbjct: 27  AGGVVTGASGGSIVVGANNGGGGGGLGIASG 57


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.2 bits (45), Expect = 7.1
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +1

Query: 877  GXPXPPXPPP 906
            G P PP PPP
Sbjct: 1855 GSPEPPPPPP 1864


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.8 bits (44), Expect = 9.4
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -2

Query: 398 LDTKKLLLRLSVLPRASDFYKIR 330
           LDTKK   ++S L   +D Y ++
Sbjct: 379 LDTKKWNNKISALRALNDLYNVK 401


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 21.8 bits (44), Expect = 9.4
 Identities = 8/25 (32%), Positives = 15/25 (60%)
 Frame = -3

Query: 187 SFDECMHIGEADSQQDNQQLVHFGY 113
           S D  + +   D+Q+DN Q++ + Y
Sbjct: 298 SKDSLVFVDNHDTQRDNPQILTYKY 322


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 255,916
Number of Sequences: 438
Number of extensions: 9278
Number of successful extensions: 49
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 44
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 31323201
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)