Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_M19
         (1347 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q55F22 Cluster: Putative uncharacterized protein; n=4; ...    35   4.2  
UniRef50_Q4RSI9 Cluster: Chromosome 13 SCAF15000, whole genome s...    35   5.6  
UniRef50_Q18756 Cluster: Collagen sequence x-hybridizing protein...    35   5.6  

>UniRef50_Q55F22 Cluster: Putative uncharacterized protein; n=4;
           Dictyostelium discoideum AX4|Rep: Putative
           uncharacterized protein - Dictyostelium discoideum AX4
          Length = 2523

 Score = 35.1 bits (77), Expect = 4.2
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +1

Query: 631 LPAPPXXXLLXXPPPXXXPPXLPLSPP 711
           +P PP    +  PPP   PP +P+SPP
Sbjct: 102 MPLPPSPPTMPLPPPPSSPPTVPISPP 128


>UniRef50_Q4RSI9 Cluster: Chromosome 13 SCAF15000, whole genome
           shotgun sequence; n=1; Tetraodon nigroviridis|Rep:
           Chromosome 13 SCAF15000, whole genome shotgun sequence -
           Tetraodon nigroviridis (Green puffer)
          Length = 307

 Score = 34.7 bits (76), Expect = 5.6
 Identities = 14/28 (50%), Positives = 14/28 (50%)
 Frame = +1

Query: 628 PLPAPPXXXLLXXPPPXXXPPXLPLSPP 711
           PLP PP       PPP   PP  P SPP
Sbjct: 176 PLPPPPFPLFPLFPPPPPPPPPPPFSPP 203


>UniRef50_Q18756 Cluster: Collagen sequence x-hybridizing protein 1;
            n=3; Caenorhabditis|Rep: Collagen sequence x-hybridizing
            protein 1 - Caenorhabditis elegans
          Length = 589

 Score = 34.7 bits (76), Expect = 5.6
 Identities = 15/44 (34%), Positives = 16/44 (36%)
 Frame = -2

Query: 1331 GXPPXXXNQKXXPPPGGXNPXXPKPKXPPHXXTTHXXSXXKXTR 1200
            G PP        P P G  P  P P  PPH    H     + TR
Sbjct: 68   GQPPGPQGPSDLPGPSGAPPGPPHPSGPPHRPHPHPSRRPRPTR 111


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 545,930,406
Number of Sequences: 1657284
Number of extensions: 5987757
Number of successful extensions: 35666
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 13837
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31559
length of database: 575,637,011
effective HSP length: 103
effective length of database: 404,936,759
effective search space used: 139703181855
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)