Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_M19
         (1347 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_21376| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.6  
SB_40518| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   3.7  
SB_39784| Best HMM Match : WH2 (HMM E-Value=2e-05)                     30   3.7  
SB_10535| Best HMM Match : Extensin_2 (HMM E-Value=0.013)              30   3.7  
SB_10665| Best HMM Match : PT (HMM E-Value=6.2)                        29   6.4  

>SB_21376| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 290

 Score = 31.5 bits (68), Expect = 1.6
 Identities = 13/28 (46%), Positives = 13/28 (46%)
 Frame = +1

Query: 628 PLPAPPXXXLLXXPPPXXXPPXLPLSPP 711
           P P PP    L  PPP   PP  P  PP
Sbjct: 150 PPPNPPYPPPLYPPPPNPPPPNAPYPPP 177



 Score = 29.5 bits (63), Expect = 6.4
 Identities = 11/26 (42%), Positives = 11/26 (42%)
 Frame = -2

Query: 1322 PXXXNQKXXPPPGGXNPXXPKPKXPP 1245
            P   N    PPP   NP  P P  PP
Sbjct: 188  PPPPNPPYPPPPNAPNPPPPNPPYPP 213



 Score = 29.1 bits (62), Expect = 8.5
 Identities = 11/26 (42%), Positives = 11/26 (42%)
 Frame = -2

Query: 1325 PPXXXNQKXXPPPGGXNPXXPKPKXP 1248
            PP   N    PPP   NP  P P  P
Sbjct: 214  PPNAPNPPYPPPPNAPNPPYPPPPNP 239


>SB_40518| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1000

 Score = 30.3 bits (65), Expect = 3.7
 Identities = 12/27 (44%), Positives = 12/27 (44%)
 Frame = -2

Query: 1325 PPXXXNQKXXPPPGGXNPXXPKPKXPP 1245
            PP        PPPGG  P  P P  PP
Sbjct: 965  PPGGGAPPLPPPPGGSAPPPPPPPPPP 991


>SB_39784| Best HMM Match : WH2 (HMM E-Value=2e-05)
          Length = 480

 Score = 30.3 bits (65), Expect = 3.7
 Identities = 12/31 (38%), Positives = 14/31 (45%)
 Frame = -2

Query: 1337 AGGXPPXXXNQKXXPPPGGXNPXXPKPKXPP 1245
            +GG PP   N    P  G  NP  P  + PP
Sbjct: 259  SGGEPPPPKNAPPPPKRGSSNPPPPPTRGPP 289


>SB_10535| Best HMM Match : Extensin_2 (HMM E-Value=0.013)
          Length = 392

 Score = 30.3 bits (65), Expect = 3.7
 Identities = 12/31 (38%), Positives = 14/31 (45%)
 Frame = -2

Query: 1337 AGGXPPXXXNQKXXPPPGGXNPXXPKPKXPP 1245
            +GG PP   N    P  G  NP  P  + PP
Sbjct: 171  SGGEPPPPKNAPPPPKRGSSNPPPPPTRGPP 201


>SB_10665| Best HMM Match : PT (HMM E-Value=6.2)
          Length = 215

 Score = 29.5 bits (63), Expect = 6.4
 Identities = 25/92 (27%), Positives = 28/92 (30%), Gaps = 5/92 (5%)
 Frame = -2

Query: 395 TKTPPHHDXEXXXTNXXRXTNTXXXAXXXDXXETXTQXXXXXXRXPNTXAXPTXPPXRXR 216
           T+TP  HD +   T     T+T       D   T TQ               T P     
Sbjct: 70  TRTPHGHDTDTTRTRHGHDTDTTRTPHGHDTDPTQTQHGHDTNPTQTQHGPHTNPTQTPH 129

Query: 215 G----QTHTPXRPR-XPXXTAXXXXTTPXTQP 135
           G     T TP RP   P  T     T P   P
Sbjct: 130 GPHTDPTWTPHRPNTDPTRTPHGPHTDPTWTP 161


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,130,733
Number of Sequences: 59808
Number of extensions: 171167
Number of successful extensions: 1160
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 318
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 977
length of database: 16,821,457
effective HSP length: 84
effective length of database: 11,797,585
effective search space used: 4294320940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)