Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP01_F_M19
(1347 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41557-6|AAA83307.1| 589|Caenorhabditis elegans Collagen sequen... 35 0.15
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 31 1.4
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 31 1.4
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 31 1.4
U40799-6|AAA81484.2| 210|Caenorhabditis elegans Ground-like (gr... 30 4.3
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 29 5.7
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 29 5.7
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 29 5.7
U58755-7|AAB00696.1| 136|Caenorhabditis elegans Hypothetical pr... 29 7.5
AF016669-1|AAB66098.3| 1758|Caenorhabditis elegans Signal elemen... 29 9.9
>U41557-6|AAA83307.1| 589|Caenorhabditis elegans Collagen sequence
x-hybridizingprotein 1 protein.
Length = 589
Score = 34.7 bits (76), Expect = 0.15
Identities = 15/44 (34%), Positives = 16/44 (36%)
Frame = -2
Query: 1331 GXPPXXXNQKXXPPPGGXNPXXPKPKXPPHXXTTHXXSXXKXTR 1200
G PP P P G P P P PPH H + TR
Sbjct: 68 GQPPGPQGPSDLPGPSGAPPGPPHPSGPPHRPHPHPSRRPRPTR 111
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 31.5 bits (68), Expect = 1.4
Identities = 13/30 (43%), Positives = 13/30 (43%)
Frame = -2
Query: 1334 GGXPPXXXNQKXXPPPGGXNPXXPKPKXPP 1245
GG PP PPPGG P P PP
Sbjct: 733 GGLPPITGGPPPPPPPGGLPPISGGPPPPP 762
Score = 29.1 bits (62), Expect = 7.5
Identities = 12/29 (41%), Positives = 12/29 (41%)
Frame = -2
Query: 1331 GXPPXXXNQKXXPPPGGXNPXXPKPKXPP 1245
G PP PPPGG P P PP
Sbjct: 718 GLPPITGGPPPPPPPGGLPPITGGPPPPP 746
Score = 29.1 bits (62), Expect = 7.5
Identities = 12/29 (41%), Positives = 12/29 (41%)
Frame = -2
Query: 1334 GGXPPXXXNQKXXPPPGGXNPXXPKPKXP 1248
GG PP PPP G P P P P
Sbjct: 749 GGLPPISGGPPPPPPPPGGCPPPPPPPPP 777
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 31.5 bits (68), Expect = 1.4
Identities = 13/30 (43%), Positives = 13/30 (43%)
Frame = -2
Query: 1334 GGXPPXXXNQKXXPPPGGXNPXXPKPKXPP 1245
GG PP PPPGG P P PP
Sbjct: 733 GGLPPITGGPPPPPPPGGLPPISGGPPPPP 762
Score = 29.1 bits (62), Expect = 7.5
Identities = 12/29 (41%), Positives = 12/29 (41%)
Frame = -2
Query: 1331 GXPPXXXNQKXXPPPGGXNPXXPKPKXPP 1245
G PP PPPGG P P PP
Sbjct: 718 GLPPITGGPPPPPPPGGLPPITGGPPPPP 746
Score = 29.1 bits (62), Expect = 7.5
Identities = 12/29 (41%), Positives = 12/29 (41%)
Frame = -2
Query: 1334 GGXPPXXXNQKXXPPPGGXNPXXPKPKXP 1248
GG PP PPP G P P P P
Sbjct: 749 GGLPPISGGPPPPPPPPGGCPPPPPPPPP 777
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 31.5 bits (68), Expect = 1.4
Identities = 13/30 (43%), Positives = 13/30 (43%)
Frame = -2
Query: 1334 GGXPPXXXNQKXXPPPGGXNPXXPKPKXPP 1245
GG PP PPPGG P P PP
Sbjct: 316 GGLPPITGGPPPPPPPGGLPPISGGPPPPP 345
Score = 29.1 bits (62), Expect = 7.5
Identities = 12/29 (41%), Positives = 12/29 (41%)
Frame = -2
Query: 1331 GXPPXXXNQKXXPPPGGXNPXXPKPKXPP 1245
G PP PPPGG P P PP
Sbjct: 301 GLPPITGGPPPPPPPGGLPPITGGPPPPP 329
Score = 29.1 bits (62), Expect = 7.5
Identities = 12/29 (41%), Positives = 12/29 (41%)
Frame = -2
Query: 1334 GGXPPXXXNQKXXPPPGGXNPXXPKPKXP 1248
GG PP PPP G P P P P
Sbjct: 332 GGLPPISGGPPPPPPPPGGCPPPPPPPPP 360
>U40799-6|AAA81484.2| 210|Caenorhabditis elegans Ground-like (grd
related) protein 4 protein.
Length = 210
Score = 29.9 bits (64), Expect = 4.3
Identities = 15/35 (42%), Positives = 15/35 (42%)
Frame = +1
Query: 607 CAXXXLXPLPAPPXXXLLXXPPPXXXPPXLPLSPP 711
CA L P P PP PPP PP P PP
Sbjct: 38 CAPPPL-PCPPPPICPPQFCPPPPMCPPPPPPPPP 71
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 29.5 bits (63), Expect = 5.7
Identities = 11/29 (37%), Positives = 13/29 (44%)
Frame = -2
Query: 1331 GXPPXXXNQKXXPPPGGXNPXXPKPKXPP 1245
G PP PPP G +P P+ PP
Sbjct: 270 GSPPPPPTGSPPPPPAGGSPPPPRAGSPP 298
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 29.5 bits (63), Expect = 5.7
Identities = 11/29 (37%), Positives = 13/29 (44%)
Frame = -2
Query: 1331 GXPPXXXNQKXXPPPGGXNPXXPKPKXPP 1245
G PP PPP G +P P+ PP
Sbjct: 291 GSPPPPPTGSPPPPPAGGSPPPPRAGSPP 319
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 29.5 bits (63), Expect = 5.7
Identities = 11/29 (37%), Positives = 13/29 (44%)
Frame = -2
Query: 1331 GXPPXXXNQKXXPPPGGXNPXXPKPKXPP 1245
G PP PPP G +P P+ PP
Sbjct: 276 GSPPPPPTGSPPPPPAGGSPPPPRAGSPP 304
>U58755-7|AAB00696.1| 136|Caenorhabditis elegans Hypothetical
protein C34D4.11 protein.
Length = 136
Score = 29.1 bits (62), Expect = 7.5
Identities = 13/28 (46%), Positives = 13/28 (46%)
Frame = -2
Query: 710 GGEXGRXGGXXXGGGXXRXXXXGGAGRG 627
GG G GG GGG GG GRG
Sbjct: 78 GGNWGGNGGGGNGGGGRGGGGGGGGGRG 105
Score = 29.1 bits (62), Expect = 7.5
Identities = 13/28 (46%), Positives = 13/28 (46%)
Frame = -2
Query: 710 GGEXGRXGGXXXGGGXXRXXXXGGAGRG 627
GG G GG GGG GG GRG
Sbjct: 102 GGRGGGGGGRGGGGGGGGGRGGGGGGRG 129
>AF016669-1|AAB66098.3| 1758|Caenorhabditis elegans Signal element on
autosome protein2 protein.
Length = 1758
Score = 28.7 bits (61), Expect = 9.9
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = +1
Query: 634 PAPPXXXLLXXPPPXXXPPXLPLSPP 711
P PP ++ PPP +PL+PP
Sbjct: 1277 PLPPANTIMPPPPPYNQASAVPLNPP 1302
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,560,307
Number of Sequences: 27780
Number of extensions: 159445
Number of successful extensions: 979
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 407
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 890
length of database: 12,740,198
effective HSP length: 84
effective length of database: 10,406,678
effective search space used: 3788030792
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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