Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP01_F_M19
(1347 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g23150.1 68418.m02707 PWWP domain-containing protein identica... 32 0.99
At1g79730.1 68414.m09300 hydroxyproline-rich glycoprotein family... 31 1.7
At1g69440.1 68414.m07979 PAZ domain-containing protein / piwi do... 31 1.7
At2g27390.1 68415.m03306 proline-rich family protein contains pr... 30 3.0
At1g61080.1 68414.m06877 proline-rich family protein 30 3.0
At5g26080.1 68418.m03103 proline-rich family protein contains pr... 29 5.3
At4g13340.1 68417.m02084 leucine-rich repeat family protein / ex... 29 5.3
At1g49750.1 68414.m05579 leucine-rich repeat family protein cont... 29 5.3
At1g68725.1 68414.m07853 arabinogalactan-protein, putative (AGP1... 29 7.0
>At5g23150.1 68418.m02707 PWWP domain-containing protein identical to
cDNA putative transcription factor (HUA2) GI:4868119;
contains Pfam profile PF00855: PWWP domain
Length = 1392
Score = 31.9 bits (69), Expect = 0.99
Identities = 15/28 (53%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Frame = +1
Query: 631 LPAPPXXXLL-XXPPPXXXPPXLPLSPP 711
LP PP L PPP PP PLSPP
Sbjct: 1091 LPPPPPAALFPPLPPPPSQPPPPPLSPP 1118
>At1g79730.1 68414.m09300 hydroxyproline-rich glycoprotein family
protein contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 589
Score = 31.1 bits (67), Expect = 1.7
Identities = 14/29 (48%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
Frame = +1
Query: 628 PLPAPP-XXXLLXXPPPXXXPPXLPLSPP 711
PLP PP L PPP PP +P PP
Sbjct: 10 PLPQPPSQNSLAPPPPPPSLPPPVPPPPP 38
>At1g69440.1 68414.m07979 PAZ domain-containing protein / piwi
domain-containing protein similar to SP|Q9XGW1 PINHEAD
protein (ZWILLE protein) {Arabidopsis thaliana};
contains Pfam profiles PF02171: Piwi domain, PF02170:
PAZ domain
Length = 990
Score = 31.1 bits (67), Expect = 1.7
Identities = 15/27 (55%), Positives = 15/27 (55%)
Frame = +1
Query: 631 LPAPPXXXLLXXPPPXXXPPXLPLSPP 711
LP PP LL PP PP LPL PP
Sbjct: 78 LPPPPPPHLLPLSPPL--PPLLPLPPP 102
>At2g27390.1 68415.m03306 proline-rich family protein contains
proline-rich extensin domains, INTERPRO:IPR002965
Length = 134
Score = 30.3 bits (65), Expect = 3.0
Identities = 12/26 (46%), Positives = 12/26 (46%)
Frame = +1
Query: 634 PAPPXXXLLXXPPPXXXPPXLPLSPP 711
P PP PPP PP LP PP
Sbjct: 65 PEPPLPPRFELPPPLFPPPPLPRLPP 90
>At1g61080.1 68414.m06877 proline-rich family protein
Length = 907
Score = 30.3 bits (65), Expect = 3.0
Identities = 11/28 (39%), Positives = 14/28 (50%)
Frame = +1
Query: 628 PLPAPPXXXLLXXPPPXXXPPXLPLSPP 711
P P PP + PPP PP ++PP
Sbjct: 510 PPPPPPLPTTIAAPPPPPPPPRAAVAPP 537
>At5g26080.1 68418.m03103 proline-rich family protein contains
proline-rich extensin domains, INTERPRO:IPR002965
Length = 141
Score = 29.5 bits (63), Expect = 5.3
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +1
Query: 628 PLPAPPXXXLLXXPPPXXXPPXLPLSPP 711
P+ +PP + PPP PP P+SPP
Sbjct: 84 PIYSPPPPPIY--PPPIYSPPPTPISPP 109
>At4g13340.1 68417.m02084 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 760
Score = 29.5 bits (63), Expect = 5.3
Identities = 13/29 (44%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
Frame = +1
Query: 628 PLPAPPXXXLLXXPPPXXXPPXLPL-SPP 711
P P PP + PPP PP P+ SPP
Sbjct: 485 PSPPPPPPPVYSPPPPPPPPPPPPVYSPP 513
Score = 29.1 bits (62), Expect = 7.0
Identities = 13/29 (44%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
Frame = +1
Query: 628 PLPAPPXXXLLXXPPPXXXPPXLPL-SPP 711
P P PP + PPP PP P+ SPP
Sbjct: 439 PPPPPPPPPVYSPPPPPPPPPPPPVYSPP 467
Score = 29.1 bits (62), Expect = 7.0
Identities = 13/29 (44%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
Frame = +1
Query: 628 PLPAPPXXXLLXXPPPXXXPPXLPL-SPP 711
P P PP + PPP PP P+ SPP
Sbjct: 470 PPPPPPPPPVYSPPPPSPPPPPPPVYSPP 498
>At1g49750.1 68414.m05579 leucine-rich repeat family protein
contains leucine-rich repeats, Pfam:PF00560
Length = 494
Score = 29.5 bits (63), Expect = 5.3
Identities = 13/28 (46%), Positives = 13/28 (46%)
Frame = +1
Query: 628 PLPAPPXXXLLXXPPPXXXPPXLPLSPP 711
P P PP PPP PP P SPP
Sbjct: 63 PPPPPPPCPPPPSPPPCPPPPSPPPSPP 90
>At1g68725.1 68414.m07853 arabinogalactan-protein, putative (AGP19)
non-consensus splice site at the intron:exon boundary
(AT:exon)
Length = 247
Score = 29.1 bits (62), Expect = 7.0
Identities = 12/28 (42%), Positives = 13/28 (46%)
Frame = +1
Query: 628 PLPAPPXXXLLXXPPPXXXPPXLPLSPP 711
P PA P PP PP P+SPP
Sbjct: 127 PTPASPPPAPASPPPAPASPPPAPVSPP 154
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,090,428
Number of Sequences: 28952
Number of extensions: 165992
Number of successful extensions: 1555
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 420
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1366
length of database: 12,070,560
effective HSP length: 83
effective length of database: 9,667,544
effective search space used: 3528653560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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