Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_M18
         (945 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F3.01 |rrp6|SPAC3H8.11|exosome subunit Rrp6 |Schizosaccharo...    26   8.9  
SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit Psm3|Sch...    26   8.9  

>SPAC1F3.01 |rrp6|SPAC3H8.11|exosome subunit Rrp6
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 777

 Score = 25.8 bits (54), Expect = 8.9
 Identities = 16/54 (29%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
 Frame = -3

Query: 325 DLVHH-HEIFVGFHVCVAVLAGLDVEVLGDFVVLSFIVDLVNVVEKRQNLLLLF 167
           DL HH +  F GF VC+  ++  + + + D + L   ++ +NVV    N++ +F
Sbjct: 243 DLEHHDYRSFRGF-VCLMQISNREKDWIVDTLELREELEALNVVFTNPNIIKVF 295


>SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit
           Psm3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1194

 Score = 25.8 bits (54), Expect = 8.9
 Identities = 29/135 (21%), Positives = 58/135 (42%), Gaps = 2/135 (1%)
 Frame = +2

Query: 158 AFVEKQKKILSLFYNVNEINYEAEYYKVAQDFNIEASKDCYTNMKAYENFMMMYKVGFLP 337
           AF++++++I  +   + E+N+  E  +V +  N E     YTN+       +  +   L 
Sbjct: 259 AFIQREERIERIKAEITELNHSLELLRVEKQQNDED----YTNIMK-SKVALELQSSQLS 313

Query: 338 KNLEFSIFYEKMREEAIALFKLFYYAKDFECFYKTACYARVY--MNQXNVLIRLLHSYYP 511
           + +EFS   E  +   ++  +     K+ E       Y  +    +  N  I LL +   
Sbjct: 314 RQIEFSKKDESSKLNILSELESKISEKENELSEILPKYNAIVSEADDLNKRIMLLKNQKQ 373

Query: 512 ALRHRQLRSTWLHTK 556
           +L  +Q R++   TK
Sbjct: 374 SLLDKQSRTSQFTTK 388


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,991,732
Number of Sequences: 5004
Number of extensions: 54052
Number of successful extensions: 145
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 481321826
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)