Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_M18
         (945 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_49134| Best HMM Match : No HMM Matches (HMM E-Value=.)              37   0.027
SB_20418| Best HMM Match : Dynein_heavy (HMM E-Value=0)                29   5.5  
SB_6643| Best HMM Match : Antimicrobial_8 (HMM E-Value=0.27)           29   7.2  
SB_17097| Best HMM Match : F-box (HMM E-Value=3.8)                     28   9.6  
SB_15167| Best HMM Match : F-box (HMM E-Value=3.8)                     28   9.6  

>SB_49134| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1060

 Score = 36.7 bits (81), Expect = 0.027
 Identities = 20/63 (31%), Positives = 33/63 (52%)
 Frame = +2

Query: 350 FSIFYEKMREEAIALFKLFYYAKDFECFYKTACYARVYMNQXNVLIRLLHSYYPALRHRQ 529
           F++ YE  RE A++ FK+     + +  Y+     +    Q N  IR+   Y PA +HR+
Sbjct: 725 FALHYEGSRESAVSAFKMGKSRAEIQRAYRERKKGKDSNWQQNESIRVQKYYTPASKHRR 784

Query: 530 LRS 538
           L+S
Sbjct: 785 LKS 787


>SB_20418| Best HMM Match : Dynein_heavy (HMM E-Value=0)
          Length = 670

 Score = 29.1 bits (62), Expect = 5.5
 Identities = 20/68 (29%), Positives = 33/68 (48%)
 Frame = +1

Query: 253 QHRGQQGLLHKHESLRKFHDDVQGRIPSQEFGILDLLRKNEGRSHRAVQAVLLCQRF*MF 432
           Q  G  G + + E + K   D+QG++PS    + D+ R  +  S     AV+L Q    F
Sbjct: 208 QTAGDSGGISREEFITKIASDIQGKLPS----LFDVDRVRKNLSEITPTAVVLLQELDRF 263

Query: 433 LQNSMLRQ 456
             N ++R+
Sbjct: 264 --NVLIRR 269


>SB_6643| Best HMM Match : Antimicrobial_8 (HMM E-Value=0.27)
          Length = 251

 Score = 28.7 bits (61), Expect = 7.2
 Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
 Frame = +1

Query: 313 DVQGRIPSQEFGILDLLR-KNEGRSHRAVQAVLLCQRF*MFLQNSMLRQSL 462
           D  G + S    I  + R K+ GR+HRA   VL+ Q   M ++  ++ QSL
Sbjct: 192 DFFGGVVSDSDRISRITRIKHHGRAHRAGDEVLVLQMMVMSIKMKLINQSL 242


>SB_17097| Best HMM Match : F-box (HMM E-Value=3.8)
          Length = 408

 Score = 28.3 bits (60), Expect = 9.6
 Identities = 21/63 (33%), Positives = 28/63 (44%)
 Frame = +2

Query: 434 YKTACYARVYMNQXNVLIRLLHSYYPALRHRQLRSTWLHTKLILNILSTWKLKIXWTTLR 613
           YK+   A  Y    + L  L  SY P   +  + S WL+ K  LN+LS W  K     L 
Sbjct: 30  YKSYLNALSYWPYKSYLNAL--SYCPYKSYLNVLSYWLY-KSYLNVLSYWLYKSFLNVLS 86

Query: 614 *WM 622
            W+
Sbjct: 87  YWL 89


>SB_15167| Best HMM Match : F-box (HMM E-Value=3.8)
          Length = 392

 Score = 28.3 bits (60), Expect = 9.6
 Identities = 21/63 (33%), Positives = 28/63 (44%)
 Frame = +2

Query: 434 YKTACYARVYMNQXNVLIRLLHSYYPALRHRQLRSTWLHTKLILNILSTWKLKIXWTTLR 613
           YK+   A  Y    + L  L  SY P   +  + S WL+ K  LN+LS W  K     L 
Sbjct: 14  YKSYLNALSYWPYKSYLNAL--SYCPYKSYLNVLSYWLY-KSYLNVLSYWLYKSFLNVLS 70

Query: 614 *WM 622
            W+
Sbjct: 71  YWL 73


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,448,959
Number of Sequences: 59808
Number of extensions: 403436
Number of successful extensions: 775
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 743
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 773
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2764790632
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)