Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_M17
         (951 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    27   2.9  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    26   6.8  

>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 18/58 (31%), Positives = 20/58 (34%), Gaps = 3/58 (5%)
 Frame = +2

Query: 614  PLEAPSCRSPV---SXXXPXYPDTCSAPXPLLXXEXGXPXPXPXAGXSLXPXPXSXPP 778
            P+ APS   PV   S   P  P    A  P+       P P P       P P   PP
Sbjct: 1084 PVPAPSGIPPVPKPSVAAPPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSGAPP 1141



 Score = 27.5 bits (58), Expect = 2.9
 Identities = 15/52 (28%), Positives = 19/52 (36%)
 Frame = +2

Query: 623  APSCRSPVSXXXPXYPDTCSAPXPLLXXEXGXPXPXPXAGXSLXPXPXSXPP 778
            AP   +P S   P  P   +   P+       P P P  G    P P + PP
Sbjct: 1168 APPVPAP-SSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPP 1218



 Score = 26.6 bits (56), Expect = 5.1
 Identities = 17/59 (28%), Positives = 20/59 (33%), Gaps = 3/59 (5%)
 Frame = +2

Query: 614  PLEAPSCRSP---VSXXXPXYPDTCSAPXPLLXXEXGXPXPXPXAGXSLXPXPXSXPPP 781
            P+  PS  +P   V    P  P    A  P+       P P P       P P S  PP
Sbjct: 1122 PVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPP 1180



 Score = 26.2 bits (55), Expect = 6.8
 Identities = 24/100 (24%), Positives = 26/100 (26%), Gaps = 6/100 (6%)
 Frame = +2

Query: 641  PVSXXXPXYPDTCSAPXPLLXXEXGXPXPXPXAGXSLXPXPXSXPP---PXWGXXXXXXX 811
            P     P  P    A  P+       P P P       P P   PP   P          
Sbjct: 1115 PAPSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAP 1174

Query: 812  XXXXXXXXXXXGTYPP*XPPPXKXPFXP---XGXPPXXXP 922
                          PP  PPP + P  P    G PP   P
Sbjct: 1175 SSGIPPVPKPAAGVPP-VPPPSEAPPVPKPSVGVPPVPPP 1213


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 26.2 bits (55), Expect = 6.8
 Identities = 21/81 (25%), Positives = 27/81 (33%), Gaps = 1/81 (1%)
 Frame = +2

Query: 539 TSITKIDAQVRGGETRQDYKXTRRFPLEAPSCRS-PVSXXXPXYPDTCSAPXPLLXXEXG 715
           TS T   +   GG +      T   P  + S  S P+        DT S+P P       
Sbjct: 227 TSCTTSTSIPTGGSSSLSTPITPTVPPTSTSSTSIPIPPTSTSSTDTNSSPLPTTSTSCT 286

Query: 716 XPXPXPXAGXSLXPXPXSXPP 778
                P  G S  P   + PP
Sbjct: 287 TSTSIPPTGNSTTPVTPTVPP 307


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,809,517
Number of Sequences: 5004
Number of extensions: 47372
Number of successful extensions: 122
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 485316198
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)