Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP01_F_M17
(951 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,121... 37 0.027
06_01_0486 - 3455030-3455770 26 0.64
08_01_0375 - 3307206-3307316,3307870-3307965,3308061-3308132,330... 26 0.77
03_01_0515 - 3864796-3865425 31 1.0
03_02_0631 + 9969841-9969868,9969965-9970082,9970186-9970828,997... 30 3.1
02_05_0686 - 30900748-30902167,30903442-30904742 30 3.1
09_02_0543 + 10427321-10428315,10428440-10429154 29 4.1
08_01_0003 + 30085-30195,30289-30365,31080-31136,31668-33560,336... 29 5.4
11_06_0610 - 25449085-25453284 29 7.2
10_08_0940 - 21708557-21708733,21709058-21709142,21709330-217095... 28 9.5
>10_01_0100 +
1209424-1209538,1210373-1211073,1211158-1211379,
1211452-1211878,1212091-1213219,1213623-1213746,
1214207-1214278,1215480-1215578,1215617-1215640,
1215704-1215745,1215815-1215895,1215983-1216114,
1216115-1216196,1216271-1216365,1218499-1218570,
1218676-1218792,1219379-1219447,1219521-1219587,
1219886-1220025
Length = 1269
Score = 36.7 bits (81), Expect = 0.027
Identities = 31/133 (23%), Positives = 41/133 (30%), Gaps = 3/133 (2%)
Frame = +2
Query: 542 SITKIDAQVRGGETRQDYKXTRRFPLEAPSCRSPVSXXXPXYPDTCSAPX--PLLXXEXG 715
SI D E + + R+ P +P+ +P P P + + P P
Sbjct: 511 SILSTDENQLPPEVQHESPSDRKLPSPSPTAAAPPPPPPPPPPPSGNKPAFSPPPPPPPP 570
Query: 716 XPXPXPXAGX-SLXPXPXSXPPPXWGXXXXXXXXXXXXXXXXXXGTYPP*XPPPXKXPFX 892
P P P + S P P PPP + PP PPP P
Sbjct: 571 PPPPLPQSNYASSQPPPPPPPPPLPNCLVPSPPPPPPPPPILPNRSVPPPPPPPPPLPNH 630
Query: 893 PXGXPPXXXPXXP 931
PP P P
Sbjct: 631 SVLPPPPPPPPPP 643
>06_01_0486 - 3455030-3455770
Length = 246
Score = 25.8 bits (54), Expect(2) = 0.64
Identities = 16/55 (29%), Positives = 19/55 (34%), Gaps = 3/55 (5%)
Frame = +2
Query: 626 PSCRSPVSXXXPXYPDT---CSAPXPLLXXEXGXPXPXPXAGXSLXPXPXSXPPP 781
PSC P + P P T +P P + P P P P PPP
Sbjct: 73 PSCHPPYTPPTPRPPPTPPYVPSPPPYVPPYIPPPTPPYVPPYIPPPTPPYVPPP 127
Score = 25.0 bits (52), Expect(2) = 0.64
Identities = 10/27 (37%), Positives = 11/27 (40%)
Frame = +2
Query: 851 YPP*XPPPXKXPFXPXGXPPXXXPXXP 931
Y P PP P+ P PP P P
Sbjct: 123 YVPPPTPPSPPPYVPPPTPPSPPPYVP 149
>08_01_0375 -
3307206-3307316,3307870-3307965,3308061-3308132,
3308247-3308315,3308427-3308513,3308753-3308858,
3309118-3309237,3309327-3309406,3309497-3309878,
3310746-3310814,3311460-3312202
Length = 644
Score = 26.2 bits (55), Expect(2) = 0.77
Identities = 16/56 (28%), Positives = 16/56 (28%)
Frame = +2
Query: 614 PLEAPSCRSPVSXXXPXYPDTCSAPXPLLXXEXGXPXPXPXAGXSLXPXPXSXPPP 781
P P P P P P P P P P S P P PPP
Sbjct: 59 PPGPPPPHQPQFNFGPGPPQQQQPPPPPQMYYQPPPPPPPYGVNSSQPPPPPPPPP 114
Score = 24.2 bits (50), Expect(2) = 0.77
Identities = 11/29 (37%), Positives = 11/29 (37%)
Frame = +2
Query: 854 PP*XPPPXKXPFXPXGXPPXXXPXXPXXR 940
PP PPP P PP P P R
Sbjct: 106 PPPPPPPPPSPPPSAPPPPPPPPTQPPPR 134
>03_01_0515 - 3864796-3865425
Length = 209
Score = 31.5 bits (68), Expect = 1.0
Identities = 25/95 (26%), Positives = 28/95 (29%)
Frame = +2
Query: 638 SPVSXXXPXYPDTCSAPXPLLXXEXGXPXPXPXAGXSLXPXPXSXPPPXWGXXXXXXXXX 817
SP + P P T ++P PL P P A L P P PPP
Sbjct: 32 SPEAEASPPSPPTEASPPPLAPPPSVTSSPPPPAAGPLMPPP--PPPPSVTSSPPPPPLP 89
Query: 818 XXXXXXXXXGTYPP*XPPPXKXPFXPXGXPPXXXP 922
PP PPP PP P
Sbjct: 90 PPPPPPAASPPPPPPSPPPPSPVKSSPPPPPAWSP 124
Score = 28.7 bits (61), Expect = 7.2
Identities = 26/90 (28%), Positives = 27/90 (30%), Gaps = 4/90 (4%)
Frame = +2
Query: 674 TCSAPXPLLXXEXGXPXPXPXAGXS-LXPXPX---SXPPPXWGXXXXXXXXXXXXXXXXX 841
T +AP P E P P A L P P S PPP G
Sbjct: 25 TTAAPAPSPEAEASPPSPPTEASPPPLAPPPSVTSSPPPPAAGPLMPPPPPPPSVTSSPP 84
Query: 842 XGTYPP*XPPPXKXPFXPXGXPPXXXPXXP 931
PP PPP P PP P P
Sbjct: 85 P---PPLPPPPPPPAASPPPPPPSPPPPSP 111
>03_02_0631 +
9969841-9969868,9969965-9970082,9970186-9970828,
9971146-9971935,9972002-9972051,9972618-9972704
Length = 571
Score = 29.9 bits (64), Expect = 3.1
Identities = 16/52 (30%), Positives = 21/52 (40%), Gaps = 1/52 (1%)
Frame = +2
Query: 626 PSCRSP-VSXXXPXYPDTCSAPXPLLXXEXGXPXPXPXAGXSLXPXPXSXPP 778
P ++P VS P PD S P + P P P + P P + PP
Sbjct: 71 PLQKAPKVSPPPPQKPDKVSPPPAQKPSKVSPPPPPPQKSAKVSPPPAAKPP 122
>02_05_0686 - 30900748-30902167,30903442-30904742
Length = 906
Score = 29.9 bits (64), Expect = 3.1
Identities = 25/105 (23%), Positives = 29/105 (27%), Gaps = 2/105 (1%)
Frame = +2
Query: 623 APSCRSPVSXXXPXYPDTCSAPXPLLXXEXGXPXPXPXAGXSLXPXPX--SXPPPXWGXX 796
+PS P P P + +A P P P A P P + PPP
Sbjct: 285 SPSLPLPPGRESPSRPQSIAAAAVASPAPPPPPPPKPAAAAPPPPPPPKAAPPPPPPKGP 344
Query: 797 XXXXXXXXXXXXXXXXGTYPP*XPPPXKXPFXPXGXPPXXXPXXP 931
G PP PPP P PP P
Sbjct: 345 PPPPPAKGPPPPPPPKGPSPPPPPPPGGKKGGPPPPPPKGGASRP 389
>09_02_0543 + 10427321-10428315,10428440-10429154
Length = 569
Score = 29.5 bits (63), Expect = 4.1
Identities = 14/51 (27%), Positives = 20/51 (39%)
Frame = +2
Query: 638 SPVSXXXPXYPDTCSAPXPLLXXEXGXPXPXPXAGXSLXPXPXSXPPPXWG 790
+P + P P++ P P P P P + + P P PPP G
Sbjct: 21 APQATPPPAIPESGPPPPPAPDMPPPPPTPAPQSSPAPPPAPDMTPPPGPG 71
>08_01_0003 + 30085-30195,30289-30365,31080-31136,31668-33560,
33643-34147,34250-34358,34436-34548,34619-34806,
35481-36129,36169-36691,36760-36911,37042-37141,
37301-37416
Length = 1530
Score = 29.1 bits (62), Expect = 5.4
Identities = 23/97 (23%), Positives = 25/97 (25%)
Frame = +2
Query: 641 PVSXXXPXYPDTCSAPXPLLXXEXGXPXPXPXAGXSLXPXPXSXPPPXWGXXXXXXXXXX 820
P+ P P P PL P P L P P PP
Sbjct: 1124 PLPDGPPPLPLDAPPPPPLPEGPPPLPSDSPPCQPPLPPSPPPATPPP---PPPLSPSLP 1180
Query: 821 XXXXXXXXGTYPP*XPPPXKXPFXPXGXPPXXXPXXP 931
+ PP P P P P PP P P
Sbjct: 1181 PPPPPPPLPSGPPPQPAPPPLPIQPPPIPPPPVPSSP 1217
>11_06_0610 - 25449085-25453284
Length = 1399
Score = 28.7 bits (61), Expect = 7.2
Identities = 16/56 (28%), Positives = 22/56 (39%)
Frame = +2
Query: 614 PLEAPSCRSPVSXXXPXYPDTCSAPXPLLXXEXGXPXPXPXAGXSLXPXPXSXPPP 781
P+++P +PV P P P++ P P A L P P PPP
Sbjct: 1180 PVKSPPPPAPVILPPPPVKSP-PPPAPVISPPPPVKSPPPPAPVILPPPPVKSPPP 1234
>10_08_0940 -
21708557-21708733,21709058-21709142,21709330-21709551,
21710640-21710815,21711883-21711946,21712433-21712507,
21715114-21715199,21715297-21716715
Length = 767
Score = 28.3 bits (60), Expect = 9.5
Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
Frame = +1
Query: 286 NESAN---ARGEAVCVLGALPLPRSLTRCAR 369
+ESAN AR EAV +G +P+ L RC+R
Sbjct: 434 DESANVDAARSEAVMRVGGIPMLLDLARCSR 464
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,993,806
Number of Sequences: 37544
Number of extensions: 437511
Number of successful extensions: 1488
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1215
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1417
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2741249160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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