Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_M16
         (1009 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0016 + 110796-110979,111252-111768,111847-112213                 34   0.21 
12_02_1174 - 26696869-26698191                                         31   1.1  
08_02_0672 - 19904353-19904839,19905646-19905704,19906137-199063...    31   1.1  
03_05_0373 + 23581812-23583293                                         30   2.5  
01_01_0401 + 3043634-3043894,3045610-3045849                           30   3.4  
11_06_0610 - 25449085-25453284                                         29   4.4  
08_01_0003 + 30085-30195,30289-30365,31080-31136,31668-33560,336...    29   5.9  
12_02_0299 - 17051570-17052474,17053542-17053755                       29   7.8  

>02_01_0016 + 110796-110979,111252-111768,111847-112213
          Length = 355

 Score = 33.9 bits (74), Expect = 0.21
 Identities = 18/59 (30%), Positives = 26/59 (44%), Gaps = 3/59 (5%)
 Frame = +1

Query: 841  LNPNPXRSXLSDPPPXSFX---IPXEXKXAPSFSPNLWRXXPTALSLXRPXSXXPPPKP 1008
            L P+P  + +  PPP S     +P   +  P   P +WR  P +L +       PPP P
Sbjct: 166  LAPSPIPTPIIAPPPVSSPAPPLPPLWRRRPRRLPPIWRPTPPSLPVDTMPPPPPPPPP 224


>12_02_1174 - 26696869-26698191
          Length = 440

 Score = 31.5 bits (68), Expect = 1.1
 Identities = 18/57 (31%), Positives = 22/57 (38%)
 Frame = +1

Query: 832  PXPLNPNPXRSXLSDPPPXSFXIPXEXKXAPSFSPNLWRXXPTALSLXRPXSXXPPP 1002
            P P+ P P  S    PPP     P      PS  P + +  P      +P S  PPP
Sbjct: 141  PPPVKPQPPPSLPPPPPPPP---PPPPPRPPSVKPPVVQPKPQPPPSLQPPSPPPPP 194


>08_02_0672 -
           19904353-19904839,19905646-19905704,19906137-19906352,
           19906845-19907422,19907506-19908180,19908263-19908653,
           19909469-19909621,19909727-19909980,19911023-19911479
          Length = 1089

 Score = 31.5 bits (68), Expect = 1.1
 Identities = 17/38 (44%), Positives = 17/38 (44%), Gaps = 3/38 (7%)
 Frame = +1

Query: 832 PXPLNPNPXRSXLSDPPPXS---FXIPXEXKXAPSFSP 936
           P PL PNP  S    PPP S      P     APSF P
Sbjct: 43  PTPLTPNPNPSPTLPPPPMSTPPVVAPPMHSFAPSFRP 80


>03_05_0373 + 23581812-23583293
          Length = 493

 Score = 30.3 bits (65), Expect = 2.5
 Identities = 14/26 (53%), Positives = 15/26 (57%)
 Frame = -3

Query: 455 DVQGGPCGAPRPCARCSASTVPKPPW 378
           D  GG   A    +RCSAST PK PW
Sbjct: 53  DGAGGYGSAASSPSRCSASTPPKSPW 78


>01_01_0401 + 3043634-3043894,3045610-3045849
          Length = 166

 Score = 29.9 bits (64), Expect = 3.4
 Identities = 23/75 (30%), Positives = 29/75 (38%), Gaps = 7/75 (9%)
 Frame = -3

Query: 473 GGGVLLDVQGGPCGAPRPCARCSASTVP----KP---PWPCRSXXXXXXXXXXXXXLSCC 315
           GGG    +   P  +P   A+C A  VP    +P   P P R                 C
Sbjct: 23  GGGGGKKLHQSPPPSPPEAAKCCADGVPVVMGEPLGAPAPPRESWNSGVLSCLGRNDEFC 82

Query: 314 STDSEPSFQALLKSC 270
           S+D E SF+A  K C
Sbjct: 83  SSDVEGSFEAFTKQC 97


>11_06_0610 - 25449085-25453284
          Length = 1399

 Score = 29.5 bits (63), Expect = 4.4
 Identities = 19/65 (29%), Positives = 23/65 (35%), Gaps = 5/65 (7%)
 Frame = +1

Query: 829  IPXPLNPNPXRSXLSDPP-----PXSFXIPXEXKXAPSFSPNLWRXXPTALSLXRPXSXX 993
            IP P+ P        +PP     P S   P   + +P   P      PT  S   P    
Sbjct: 432  IPVPVGPPEKSPAYEEPPAAPSTPTSHGPPPPEEESPEEPPEEPTPSPTPSSPESPAKMA 491

Query: 994  PPPKP 1008
            PPP P
Sbjct: 492  PPPAP 496


>08_01_0003 + 30085-30195,30289-30365,31080-31136,31668-33560,
            33643-34147,34250-34358,34436-34548,34619-34806,
            35481-36129,36169-36691,36760-36911,37042-37141,
            37301-37416
          Length = 1530

 Score = 29.1 bits (62), Expect = 5.9
 Identities = 18/59 (30%), Positives = 19/59 (32%)
 Frame = +1

Query: 832  PXPLNPNPXRSXLSDPPPXSFXIPXEXKXAPSFSPNLWRXXPTALSLXRPXSXXPPPKP 1008
            P PL+  P       PPP     P      P   P      P  LS   P    PPP P
Sbjct: 1131 PLPLDAPPPPPLPEGPPPLPSDSPPCQPPLPPSPPPATPPPPPPLSPSLPPPPPPPPLP 1189


>12_02_0299 - 17051570-17052474,17053542-17053755
          Length = 372

 Score = 28.7 bits (61), Expect = 7.8
 Identities = 20/61 (32%), Positives = 24/61 (39%), Gaps = 1/61 (1%)
 Frame = +1

Query: 829  IPXPLNPNPXRSXLSDPPP-XSFXIPXEXKXAPSFSPNLWRXXPTALSLXRPXSXXPPPK 1005
            +P PL P P  +  S PPP   F +P      P   P      P    +  P S  PPP 
Sbjct: 240  LPFPLPPIPFLTPPSPPPPAFPFPLPPWPWAPPPAFP-----FPHLPPIFSPPSPPPPPP 294

Query: 1006 P 1008
            P
Sbjct: 295  P 295


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,900,996
Number of Sequences: 37544
Number of extensions: 400352
Number of successful extensions: 1644
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1419
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1625
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2963829220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)