Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_M16
         (1009 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK092577-1|BAC03917.1|  142|Homo sapiens oA ligase form XL-III. ...    31   5.0  

>AK092577-1|BAC03917.1|  142|Homo sapiens oA ligase form XL-III.
           protein.
          Length = 142

 Score = 31.5 bits (68), Expect = 5.0
 Identities = 16/43 (37%), Positives = 20/43 (46%)
 Frame = -3

Query: 494 ACSFSRRGGGVLLDVQGGPCGAPRPCARCSASTVPKPPWPCRS 366
           AC++     G L   + G  GA  PC   +A T   PPWP  S
Sbjct: 15  ACAWPMAPMGALAAWRSGMAGAGAPCV-MTAGTCAMPPWPAGS 56


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 104,685,675
Number of Sequences: 237096
Number of extensions: 1904338
Number of successful extensions: 10754
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 9392
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10590
length of database: 76,859,062
effective HSP length: 91
effective length of database: 55,283,326
effective search space used: 13489131544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)