Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_M14
         (924 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase Ppk30|Schizos...    27   2.8  
SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyc...    22   6.2  
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple...    26   6.5  

>SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase
           Ppk30|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 953

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 3/54 (5%)
 Frame = +2

Query: 320 LPLXGTPIQITYI---ADANGYQPSGAHLPTTPAPXPNPRLHRPGHRVHQNSPT 472
           + + GTP+++  +    +A+ Y P  A L  TP+    P   RP H      PT
Sbjct: 325 MEMQGTPLKLPDVYGGVNASTYNPPRAPLQRTPSGSLTPLSSRPAHTSLPPIPT 378


>SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 781

 Score = 22.2 bits (45), Expect(2) = 6.2
 Identities = 8/17 (47%), Positives = 9/17 (52%)
 Frame = +2

Query: 398 PTTPAPXPNPRLHRPGH 448
           P TP P    R H+P H
Sbjct: 103 PATPIPVSASRHHKPHH 119



 Score = 22.2 bits (45), Expect(2) = 6.2
 Identities = 10/31 (32%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
 Frame = +2

Query: 440 PGHRVHQNSPTQ---ARGRPTYLSYMIVDKD 523
           PGH+ + NSPT    ++G  ++++  I+ K+
Sbjct: 132 PGHKSNANSPTSESPSKGFGSFINNHILHKN 162


>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
           subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1522

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 18/47 (38%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
 Frame = +2

Query: 365 ANGYQPSGAHLPTTPAPXPNPRLHRPGHRVHQNSPTQA-RGRPTYLS 502
           ANGY       P+   P P P+ H P   V   SP +A   +PT LS
Sbjct: 97  ANGYAAVYGGPPSQLPPPPQPQSH-PNVTVISASPARAIEQQPTILS 142


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,675,748
Number of Sequences: 5004
Number of extensions: 50038
Number of successful extensions: 136
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 467341524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)