Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_M14
         (924 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69360-4|CAC42291.2|  732|Caenorhabditis elegans Hypothetical pr...    30   2.0  
Z69360-3|CAA93286.2|  369|Caenorhabditis elegans Hypothetical pr...    30   2.0  
Z69360-2|CAA93285.2|  780|Caenorhabditis elegans Hypothetical pr...    30   2.0  
Z82062-2|CAB04890.1|  489|Caenorhabditis elegans Hypothetical pr...    28   8.2  
U64848-6|AAB04885.1|  208|Caenorhabditis elegans Hypothetical pr...    28   8.2  
U53333-5|AAA96158.2| 1852|Caenorhabditis elegans Amanitin resist...    28   8.2  
U41746-9|AAA83334.3|  559|Caenorhabditis elegans Groundhog (hedg...    28   8.2  
M29235-1|AAA28126.1| 1859|Caenorhabditis elegans protein ( C.ele...    28   8.2  
AF040654-7|AAK21450.2|  362|Caenorhabditis elegans Hypothetical ...    28   8.2  

>Z69360-4|CAC42291.2|  732|Caenorhabditis elegans Hypothetical
           protein F25H8.5c protein.
          Length = 732

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 23/78 (29%), Positives = 27/78 (34%)
 Frame = +2

Query: 212 STNIRPATESVARNKERS*TRAVRMHPSPSKVQAATLPLXGTPIQITYIADANGYQPSGA 391
           S   R   E+ AR +ER   R  +  P P   +   LP  G P            QP   
Sbjct: 66  SAEERARAEADARRRERCRNRRPQPTPGPPPPRNNCLPPPGPPPPCQQYQQP---QPPPC 122

Query: 392 HLPTTPAPXPNPRLHRPG 445
             P  P P P P   R G
Sbjct: 123 QRPQPPQPQPQPYPQRTG 140


>Z69360-3|CAA93286.2|  369|Caenorhabditis elegans Hypothetical
           protein F25H8.5b protein.
          Length = 369

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 23/78 (29%), Positives = 27/78 (34%)
 Frame = +2

Query: 212 STNIRPATESVARNKERS*TRAVRMHPSPSKVQAATLPLXGTPIQITYIADANGYQPSGA 391
           S   R   E+ AR +ER   R  +  P P   +   LP  G P            QP   
Sbjct: 66  SAEERARAEADARRRERCRNRRPQPTPGPPPPRNNCLPPPGPPPPCQQYQQP---QPPPC 122

Query: 392 HLPTTPAPXPNPRLHRPG 445
             P  P P P P   R G
Sbjct: 123 QRPQPPQPQPQPYPQRTG 140


>Z69360-2|CAA93285.2|  780|Caenorhabditis elegans Hypothetical
           protein F25H8.5a protein.
          Length = 780

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 23/78 (29%), Positives = 27/78 (34%)
 Frame = +2

Query: 212 STNIRPATESVARNKERS*TRAVRMHPSPSKVQAATLPLXGTPIQITYIADANGYQPSGA 391
           S   R   E+ AR +ER   R  +  P P   +   LP  G P            QP   
Sbjct: 66  SAEERARAEADARRRERCRNRRPQPTPGPPPPRNNCLPPPGPPPPCQQYQQP---QPPPC 122

Query: 392 HLPTTPAPXPNPRLHRPG 445
             P  P P P P   R G
Sbjct: 123 QRPQPPQPQPQPYPQRTG 140


>Z82062-2|CAB04890.1|  489|Caenorhabditis elegans Hypothetical
           protein W02A11.3 protein.
          Length = 489

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 17/50 (34%), Positives = 21/50 (42%)
 Frame = +2

Query: 320 LPLXGTPIQITYIADANGYQPSGAHLPTTPAPXPNPRLHRPGHRVHQNSP 469
           LP+     Q    A A     + A +P  P P P P LH P     QN+P
Sbjct: 299 LPMAAVAQQHAAAAAAVVAVAAAAAVPQPPPPPPQPTLHAPVPIRPQNNP 348


>U64848-6|AAB04885.1|  208|Caenorhabditis elegans Hypothetical
           protein C50E3.10 protein.
          Length = 208

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 16/65 (24%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
 Frame = +1

Query: 169 QIVSQDADVFPDKYQYQYQTSNGISGQEQGALVNEGREDASIAVQGSSGY-TAPXWYSHS 345
           Q+  ++  +  + YQY   T + + GQ+  A +N+   DA  +   ++ Y      YS S
Sbjct: 79  QLEKRELTLGENIYQYDVTTYDDVDGQQGEAAINKDSHDALSSKDQAAQYRLRQILYSKS 138

Query: 346 DHLHC 360
           + + C
Sbjct: 139 NSIGC 143


>U53333-5|AAA96158.2| 1852|Caenorhabditis elegans Amanitin resistant
            protein 1 protein.
          Length = 1852

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 19/69 (27%), Positives = 27/69 (39%), Gaps = 1/69 (1%)
 Frame = +2

Query: 293  SPSKVQAATLPLXGTPIQITYIADANGYQP-SGAHLPTTPAPXPNPRLHRPGHRVHQNSP 469
            SPS    +      +P   TY   +  Y P S  + PT+P   P    +  G     +SP
Sbjct: 1662 SPSSPSYSPSSPRYSPTSPTYSPTSPTYSPTSPTYSPTSPTYSPTSPSYESGGGYSPSSP 1721

Query: 470  TQARGRPTY 496
              +   PTY
Sbjct: 1722 KYSPSSPTY 1730


>U41746-9|AAA83334.3|  559|Caenorhabditis elegans Groundhog
           (hedgehog-like family)protein 6 protein.
          Length = 559

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 32/105 (30%), Positives = 42/105 (40%), Gaps = 5/105 (4%)
 Frame = +2

Query: 191 TFSRTNTSTNIRPATE--SVARNKERS*TRAVRMHPSPSKVQAATLPLXGTPIQITYIAD 364
           T  R  T+T   P T   + AR      T +    PSP+  +A T PL  TP+  T    
Sbjct: 276 TTKRITTTTTAAPTTPRLTTARATTPLATTSRPTTPSPTTPRATT-PLATTPLATTRAPL 334

Query: 365 ANGYQPSGAHLPTTPAPXPNPR---LHRPGHRVHQNSPTQARGRP 490
                P  +  P T AP   PR     RP     + +P + R RP
Sbjct: 335 PPSPPPRTSKRPVTQAP-TTPRATTTRRPTTTTPRPTPRRTR-RP 377


>M29235-1|AAA28126.1| 1859|Caenorhabditis elegans protein ( C.elegans
            RNA polymeraseII largest subunit (ama-1 IV) gene,
            complete cds. ).
          Length = 1859

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 19/69 (27%), Positives = 27/69 (39%), Gaps = 1/69 (1%)
 Frame = +2

Query: 293  SPSKVQAATLPLXGTPIQITYIADANGYQP-SGAHLPTTPAPXPNPRLHRPGHRVHQNSP 469
            SPS    +      +P   TY   +  Y P S  + PT+P   P    +  G     +SP
Sbjct: 1669 SPSSPSYSPSSPRYSPTSPTYSPTSPTYSPTSPTYSPTSPTYSPTSPSYESGGGYSPSSP 1728

Query: 470  TQARGRPTY 496
              +   PTY
Sbjct: 1729 KYSPSSPTY 1737


>AF040654-7|AAK21450.2|  362|Caenorhabditis elegans Hypothetical
           protein R06B10.3 protein.
          Length = 362

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = -2

Query: 506 YNLNTLADLWLGWVSSDVLDGPGDVIWDWXQGL 408
           YNL++ +++W  +    + D   D  W+W  GL
Sbjct: 76  YNLSSNSNVWANYFWIGLTDMTADGSWEWIDGL 108


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,464,985
Number of Sequences: 27780
Number of extensions: 311350
Number of successful extensions: 894
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 848
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 889
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2370744068
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)