Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_M14
         (924 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g14540.1 68418.m01704 proline-rich family protein contains pr...    32   0.47 
At1g35230.1 68414.m04369 arabinogalactan-protein (AGP5) identica...    31   1.4  
At5g08450.2 68418.m00996 expressed protein KED, Nicotiana tabacu...    30   1.9  
At5g08450.1 68418.m00995 expressed protein KED, Nicotiana tabacu...    30   1.9  
At3g53330.1 68416.m05884 plastocyanin-like domain-containing pro...    30   2.5  
At4g01090.1 68417.m00147 extra-large G-protein-related contains ...    29   3.3  
At2g27660.1 68415.m03352 DC1 domain-containing protein contains ...    29   3.3  

>At5g14540.1 68418.m01704 proline-rich family protein contains
           proline rich extensin domains, INTERPRO:IPR002965
          Length = 547

 Score = 32.3 bits (70), Expect = 0.47
 Identities = 19/71 (26%), Positives = 27/71 (38%)
 Frame = +2

Query: 293 SPSKVQAATLPLXGTPIQITYIADANGYQPSGAHLPTTPAPXPNPRLHRPGHRVHQNSPT 472
           SP  +Q   LP   +P Q  Y   +   QP     P    P P   LH+P ++     P 
Sbjct: 277 SPPSLQLPQLPNQFSPQQEPYFPPSGQSQPPPTIQPPYQPPPPTQSLHQPPYQPPPQQPQ 336

Query: 473 QARGRPTYLSY 505
             +  P  L +
Sbjct: 337 YPQQPPPQLQH 347


>At1g35230.1 68414.m04369 arabinogalactan-protein (AGP5) identical
           to gi_3883128_gb_AAC77827
          Length = 133

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 15/41 (36%), Positives = 19/41 (46%)
 Frame = +2

Query: 356 IADANGYQPSGAHLPTTPAPXPNPRLHRPGHRVHQNSPTQA 478
           +A A G  P+ + LP TP P  +PR   P      N P  A
Sbjct: 20  VAQAPGPAPTISPLPATPTPSQSPRATAPAPSPSANPPPSA 60


>At5g08450.2 68418.m00996 expressed protein KED, Nicotiana tabacum,
           EMBL:AB009883
          Length = 918

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 18/67 (26%), Positives = 29/67 (43%)
 Frame = +2

Query: 290 PSPSKVQAATLPLXGTPIQITYIADANGYQPSGAHLPTTPAPXPNPRLHRPGHRVHQNSP 469
           P  S  +  T P   + +   Y  + +G  P   H P TP P      H+  H+ H  S 
Sbjct: 5   PKRSHEEGVTHPSSSSSVA-KYPHEDSGSYPKSPHQPVTPPPAQVHHNHQQPHQ-HPQSQ 62

Query: 470 TQARGRP 490
           +Q++ +P
Sbjct: 63  SQSQPQP 69


>At5g08450.1 68418.m00995 expressed protein KED, Nicotiana tabacum,
           EMBL:AB009883
          Length = 918

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 18/67 (26%), Positives = 29/67 (43%)
 Frame = +2

Query: 290 PSPSKVQAATLPLXGTPIQITYIADANGYQPSGAHLPTTPAPXPNPRLHRPGHRVHQNSP 469
           P  S  +  T P   + +   Y  + +G  P   H P TP P      H+  H+ H  S 
Sbjct: 5   PKRSHEEGVTHPSSSSSVA-KYPHEDSGSYPKSPHQPVTPPPAQVHHNHQQPHQ-HPQSQ 62

Query: 470 TQARGRP 490
           +Q++ +P
Sbjct: 63  SQSQPQP 69


>At3g53330.1 68416.m05884 plastocyanin-like domain-containing
           protein similar to mavicyanin SP:P80728 from [Cucurbita
           pepo]
          Length = 310

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 21/77 (27%), Positives = 33/77 (42%), Gaps = 1/77 (1%)
 Frame = +2

Query: 290 PSPSKVQAATLPLXGTPIQITYIADANGYQPSGAHLPTTPAPXPNP-RLHRPGHRVHQNS 466
           P PSK    + P+  +P        +  ++PS    P TP P P P + H P  R+  + 
Sbjct: 124 PPPSKTHERSRPITPSPPP-----PSKTHEPSR---PNTPPPPPPPSKTHEPSRRITPSP 175

Query: 467 PTQARGRPTYLSYMIVD 517
           P  ++  P    Y + D
Sbjct: 176 PPPSKILPFGKIYRVGD 192


>At4g01090.1 68417.m00147 extra-large G-protein-related contains
           weak similarity to extra-large G-protein [Arabidopsis
           thaliana] gi|3201682|gb|AAC19353
          Length = 714

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 20/68 (29%), Positives = 26/68 (38%), Gaps = 4/68 (5%)
 Frame = +2

Query: 338 PIQITYIADANGYQPSGAHLP----TTPAPXPNPRLHRPGHRVHQNSPTQARGRPTYLSY 505
           P  I Y    +G  P     P      P P PNP  + PGH  +Q +     G+   L  
Sbjct: 136 PEPIQYPGPVHGMYPQAYQDPYGYQRRPPPVPNPNWYPPGHYPNQMARQYPGGQYVELGP 195

Query: 506 MIVDKDDY 529
            IV+   Y
Sbjct: 196 DIVEPHSY 203


>At2g27660.1 68415.m03352 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 718

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 15/35 (42%), Positives = 15/35 (42%), Gaps = 3/35 (8%)
 Frame = +2

Query: 392 HLPTTPAPXPNPRLHRPGHRVHQNS---PTQARGR 487
           HL       PNP  H  GH  HQNS   P Q   R
Sbjct: 181 HLLQHSTSAPNPHTHHAGHPQHQNSLPVPNQGSNR 215


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,648,545
Number of Sequences: 28952
Number of extensions: 293431
Number of successful extensions: 883
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 804
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 878
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2197951248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)