Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_M13
         (860 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26A3.04 |rpl2002|rpl20, rpl20-2|60S ribosomal protein L20|Sc...   146   5e-36
SPAC3A12.10 |rpl2001|rpl20-1, rpl20, yl17b, rpl18a-2|60S ribosom...   146   5e-36
SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting pro...    29   0.85 
SPBC409.17c |||DUF1769 family protein|Schizosaccharomyces pombe|...    27   2.6  
SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb...    26   7.9  

>SPAC26A3.04 |rpl2002|rpl20, rpl20-2|60S ribosomal protein
           L20|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 176

 Score =  146 bits (353), Expect = 5e-36
 Identities = 65/123 (52%), Positives = 86/123 (69%)
 Frame = +3

Query: 120 LREYEVIGRKLPSENEPKPPLYKMRIFSPDPIVAKSRFWYFLRQLKKFKKTTGXXXXXXX 299
           L+EY+V+GRK+P+E+EP P L++MR+F+P+  VAKSR+WYFL+ + K KK TG       
Sbjct: 3   LKEYQVVGRKVPTEHEPVPKLFRMRLFAPNESVAKSRYWYFLKMINKVKKATGEIVAINE 62

Query: 300 XXXXXXXXXXNFGIWLRYESRSGVHNMYREYRDLSVGGAVTQCYRDMGARHRARAHSIQI 479
                      FGIW+RY+SRSG HNMY+E+RD +  GAV   Y DM ARHRAR  SI+I
Sbjct: 63  ISEPKPLKAKVFGIWIRYDSRSGTHNMYKEFRDTTRVGAVEAMYADMAARHRARFRSIRI 122

Query: 480 IKV 488
           +KV
Sbjct: 123 LKV 125


>SPAC3A12.10 |rpl2001|rpl20-1, rpl20, yl17b, rpl18a-2|60S ribosomal
           protein L20a|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 176

 Score =  146 bits (353), Expect = 5e-36
 Identities = 65/123 (52%), Positives = 86/123 (69%)
 Frame = +3

Query: 120 LREYEVIGRKLPSENEPKPPLYKMRIFSPDPIVAKSRFWYFLRQLKKFKKTTGXXXXXXX 299
           L+EY+V+GRK+P+E+EP P L++MR+F+P+  VAKSR+WYFL+ + K KK TG       
Sbjct: 3   LKEYQVVGRKVPTEHEPVPKLFRMRLFAPNESVAKSRYWYFLKMINKVKKATGEIVAINE 62

Query: 300 XXXXXXXXXXNFGIWLRYESRSGVHNMYREYRDLSVGGAVTQCYRDMGARHRARAHSIQI 479
                      FGIW+RY+SRSG HNMY+E+RD +  GAV   Y DM ARHRAR  SI+I
Sbjct: 63  ISEPKPLKAKVFGIWIRYDSRSGTHNMYKEFRDTTRVGAVEAMYADMAARHRARFRSIRI 122

Query: 480 IKV 488
           +KV
Sbjct: 123 LKV 125


>SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting
           protein 3 homolog Bud6|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1385

 Score = 29.1 bits (62), Expect = 0.85
 Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
 Frame = +1

Query: 199 SLRIQLSPNLVSGIS*DNLRSSRRPLVKLSLLRKFXXK---APSRLRTLVSGYAMSL 360
           S ++   P++V   S D+ + SRRP +  S  RKF  K    PS  ++L  G   SL
Sbjct: 295 SPKVSKRPSIVRQDSHDSNKLSRRPTINTSFDRKFSPKLTRTPSLTKSLDPGTPTSL 351


>SPBC409.17c |||DUF1769 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 222

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 17/58 (29%), Positives = 27/58 (46%)
 Frame = -3

Query: 213 LDPERKFSFYTREAWARSPKGACGR*PHILSTVL*PSFLEFLSERLGQRKREH*RQKS 40
           +DP  +F  Y  + WA SP  A      +   +L   + E  S R  Q +++  RQ+S
Sbjct: 102 VDPSIEFDLYCDQPWAFSPFFATMTKMQVSDALLPMEYFEDHSSRRSQMQQQVIRQES 159


>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1428

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 11/39 (28%), Positives = 19/39 (48%)
 Frame = +3

Query: 123 REYEVIGRKLPSENEPKPPLYKMRIFSPDPIVAKSRFWY 239
           +E  V+   +  E     P   +R +SP+ ++  S FWY
Sbjct: 470 QEILVLKSSIEKEKVEIVPFLDIRKYSPNEVLCMSPFWY 508


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,634,177
Number of Sequences: 5004
Number of extensions: 46194
Number of successful extensions: 131
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 428468660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)