Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_M13
         (860 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_07_0131 + 27898028-27898042,27898159-27898274,27898361-278984...   134   1e-31
01_06_0730 - 31552747-31553088,31553583-31553646,31553743-315538...   133   1e-31
01_06_0180 - 27260099-27260440,27261236-27261350,27261403-272615...   113   2e-25

>05_07_0131 +
           27898028-27898042,27898159-27898274,27898361-27898424,
           27899450-27899791
          Length = 178

 Score =  134 bits (323), Expect = 1e-31
 Identities = 57/127 (44%), Positives = 83/127 (65%)
 Frame = +3

Query: 117 QLREYEVIGRKLPSENEPKPPLYKMRIFSPDPIVAKSRFWYFLRQLKKFKKTTGXXXXXX 296
           +  +Y+V+GR LP+  +  P +Y+M++++ + + AKS+FWYFLR+LKK KK+ G      
Sbjct: 5   RFHQYQVVGRALPTPGDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAIN 64

Query: 297 XXXXXXXXXXXNFGIWLRYESRSGVHNMYREYRDLSVGGAVTQCYRDMGARHRARAHSIQ 476
                      N+GIWLRY+SR+G HNMY+EYRD ++ GAV Q Y +M +RHR R   IQ
Sbjct: 65  EIFERNPTTIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRFPCIQ 124

Query: 477 IIKVEVI 497
           IIK   +
Sbjct: 125 IIKTATV 131



 Score = 33.9 bits (74), Expect = 0.17
 Identities = 13/21 (61%), Positives = 15/21 (71%)
 Frame = +1

Query: 511 CRRPQVKQFHNSTIRFPLXKR 573
           C+R   KQFHNS I+FPL  R
Sbjct: 136 CKRDNTKQFHNSNIKFPLVYR 156


>01_06_0730 -
           31552747-31553088,31553583-31553646,31553743-31553858,
           31553964-31553978
          Length = 178

 Score =  133 bits (322), Expect = 1e-31
 Identities = 57/127 (44%), Positives = 83/127 (65%)
 Frame = +3

Query: 117 QLREYEVIGRKLPSENEPKPPLYKMRIFSPDPIVAKSRFWYFLRQLKKFKKTTGXXXXXX 296
           +  +Y+V+GR LP+  +  P +Y+M++++ + + AKS+FWYFLR+LKK KK+ G      
Sbjct: 5   RFHQYQVVGRGLPTPTDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQILAIN 64

Query: 297 XXXXXXXXXXXNFGIWLRYESRSGVHNMYREYRDLSVGGAVTQCYRDMGARHRARAHSIQ 476
                      N+GIWLRY+SR+G HNMY+EYRD ++ GAV Q Y +M +RHR R   IQ
Sbjct: 65  EIFEKNPTTIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRFPCIQ 124

Query: 477 IIKVEVI 497
           IIK   +
Sbjct: 125 IIKTATV 131



 Score = 31.1 bits (67), Expect = 1.2
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = +1

Query: 511 CRRPQVKQFHNSTIRFPLXKR 573
           C+R   KQFH S I+FPL  R
Sbjct: 136 CKRDNTKQFHKSDIKFPLVYR 156


>01_06_0180 -
           27260099-27260440,27261236-27261350,27261403-27261518,
           27261594-27261608
          Length = 195

 Score =  113 bits (271), Expect = 2e-25
 Identities = 57/144 (39%), Positives = 83/144 (57%), Gaps = 17/144 (11%)
 Frame = +3

Query: 117 QLREYEVIGRKLPSENEPKPPLYKMRIFSPDPIVAKSRF----------W-------YFL 245
           +  +Y+V+GR LP+  +  P +Y+M++++ + + AKS+F          W       YFL
Sbjct: 5   RFHQYQVVGRALPTPGDEHPKIYRMKLWATNEVRAKSKFCSSYLVRFADWGACPVCRYFL 64

Query: 246 RQLKKFKKTTGXXXXXXXXXXXXXXXXXNFGIWLRYESRSGVHNMYREYRDLSVGGAVTQ 425
           R+LKK KK+ G                 N+GIWLRY+SR+G HNMY+EYRD ++ GAV Q
Sbjct: 65  RKLKKVKKSNGQMLAINEIFERNPTTIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQ 124

Query: 426 CYRDMGARHRARAHSIQIIKVEVI 497
            Y +M +RHR R   IQIIK   +
Sbjct: 125 MYTEMASRHRVRFPCIQIIKTATV 148



 Score = 32.7 bits (71), Expect = 0.39
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = +1

Query: 511 CRRPQVKQFHNSTIRFPLXKR 573
           C+R   KQFHN +I+FPL  R
Sbjct: 153 CKRDNTKQFHNGSIKFPLVYR 173


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,166,646
Number of Sequences: 37544
Number of extensions: 324745
Number of successful extensions: 911
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 868
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 904
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2409218220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)