Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_M13
         (860 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF038611-9|AAB92041.2|  180|Caenorhabditis elegans Ribosomal pro...   163   2e-40

>AF038611-9|AAB92041.2|  180|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 20 protein.
          Length = 180

 Score =  163 bits (395), Expect = 2e-40
 Identities = 72/134 (53%), Positives = 96/134 (71%), Gaps = 1/134 (0%)
 Frame = +3

Query: 105 KAKGQ-LREYEVIGRKLPSENEPKPPLYKMRIFSPDPIVAKSRFWYFLRQLKKFKKTTGX 281
           KA G+ L EY V+GRK+P+E EP  P++KM+IF+ + ++AKSRFWYF+  L++ KK  G 
Sbjct: 4   KALGETLNEYVVVGRKIPTEKEPVTPIWKMQIFATNHVIAKSRFWYFVSMLRRVKKANGE 63

Query: 282 XXXXXXXXXXXXXXXXNFGIWLRYESRSGVHNMYREYRDLSVGGAVTQCYRDMGARHRAR 461
                           N+G+WL+Y+SR+G HNMYREYRD +V GAVTQCYRDMGARHRA+
Sbjct: 64  ILSIKQVFEKNPGTVKNYGVWLKYDSRTGHHNMYREYRDTTVAGAVTQCYRDMGARHRAQ 123

Query: 462 AHSIQIIKVEVIKA 503
           A  I I+KV+ +KA
Sbjct: 124 ADRIHILKVQTVKA 137



 Score = 28.3 bits (60), Expect = 7.4
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +1

Query: 514 RRPQVKQFHNSTIRFPLXKRV 576
           +R  +K FH++ IRFPL  RV
Sbjct: 141 KRAGIKMFHDAKIRFPLPHRV 161


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,855,944
Number of Sequences: 27780
Number of extensions: 267332
Number of successful extensions: 655
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 633
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 654
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2150453690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)