Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP01_F_M13
(860 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g34480.1 68415.m04233 60S ribosomal protein L18A (RPL18aB) 141 6e-34
At1g29965.1 68414.m03664 60S ribosomal protein L18A (RPL18aA) JRW 141 6e-34
At3g14600.1 68416.m01849 60S ribosomal protein L18A (RPL18aC) si... 137 8e-33
At2g35200.1 68415.m04317 expressed protein 30 1.7
At4g02260.1 68417.m00307 RelA/SpoT protein, putative (RSH1) iden... 29 3.0
At3g43870.1 68416.m04696 hypothetical protein 29 3.0
At3g43390.1 68416.m04592 hypothetical protein similar to At3g243... 29 4.0
At1g26870.1 68414.m03277 no apical meristem (NAM) family protein... 28 7.0
At5g58150.1 68418.m07278 leucine-rich repeat transmembrane prote... 28 9.2
At5g36860.1 68418.m04416 Ulp1 protease family protein contains P... 28 9.2
At4g05280.1 68417.m00799 Ulp1 protease family protein contains P... 28 9.2
At4g03300.1 68417.m00451 Ulp1 protease family protein contains P... 28 9.2
At3g24390.1 68416.m03063 Ulp1 protease family protein contains P... 28 9.2
At1g54490.1 68414.m06215 5'-3' exoribonuclease (XRN4) identical ... 28 9.2
At1g27780.1 68414.m03399 Ulp1 protease family protein similar to... 28 9.2
At1g25886.1 68414.m03180 Ulp1 protease family protein contains P... 28 9.2
>At2g34480.1 68415.m04233 60S ribosomal protein L18A (RPL18aB)
Length = 178
Score = 141 bits (341), Expect = 6e-34
Identities = 64/139 (46%), Positives = 90/139 (64%), Gaps = 1/139 (0%)
Frame = +3
Query: 117 QLREYEVIGRKLPSENEPKPPLYKMRIFSPDPIVAKSRFWYFLRQLKKFKKTTGXXXXXX 296
+ +Y+V+GR LP+E + +P +Y+M++++ + + AKS+FWYFLR+LKK KK+ G
Sbjct: 5 RFHQYQVVGRALPTEKDVQPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAIN 64
Query: 297 XXXXXXXXXXXNFGIWLRYESRSGVHNMYREYRDLSVGGAVTQCYRDMGARHRARAHSIQ 476
NFGIWLRY+SR+G HNMY+EYRD ++ GAV Q Y +M +RHR R IQ
Sbjct: 65 EIYEKNPTTIKNFGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRFPCIQ 124
Query: 477 IIKVEVIKA-CCVSPSTGQ 530
IIK + A C ST Q
Sbjct: 125 IIKTATVPAKLCKRESTKQ 143
Score = 33.1 bits (72), Expect = 0.24
Identities = 13/21 (61%), Positives = 15/21 (71%)
Frame = +1
Query: 511 CRRPQVKQFHNSTIRFPLXKR 573
C+R KQFHNS I+FPL R
Sbjct: 136 CKRESTKQFHNSKIKFPLVFR 156
>At1g29965.1 68414.m03664 60S ribosomal protein L18A (RPL18aA) JRW
Length = 178
Score = 141 bits (341), Expect = 6e-34
Identities = 63/139 (45%), Positives = 91/139 (65%), Gaps = 1/139 (0%)
Frame = +3
Query: 117 QLREYEVIGRKLPSENEPKPPLYKMRIFSPDPIVAKSRFWYFLRQLKKFKKTTGXXXXXX 296
+L +Y+V+GR LP+E + +P +Y+M++++ + ++AKS+FWY+LR+ KK KK+ G
Sbjct: 5 RLHQYQVVGRALPTEKDEQPKIYRMKLWATNEVLAKSKFWYYLRRQKKVKKSNGQMLAIN 64
Query: 297 XXXXXXXXXXXNFGIWLRYESRSGVHNMYREYRDLSVGGAVTQCYRDMGARHRARAHSIQ 476
NFGIWLRY+SR+G HNMY+EYRD ++ GAV Q Y +M +RHR R IQ
Sbjct: 65 EIFEKNPTTIKNFGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRFPCIQ 124
Query: 477 IIKVEVIKA-CCVSPSTGQ 530
IIK + A C ST Q
Sbjct: 125 IIKTATVPASLCKRESTKQ 143
Score = 33.5 bits (73), Expect = 0.18
Identities = 15/25 (60%), Positives = 18/25 (72%), Gaps = 1/25 (4%)
Frame = +1
Query: 502 PAA-CRRPQVKQFHNSTIRFPLXKR 573
PA+ C+R KQFHNS I+FPL R
Sbjct: 132 PASLCKRESTKQFHNSKIKFPLVFR 156
>At3g14600.1 68416.m01849 60S ribosomal protein L18A (RPL18aC)
similar to GB:CAA08791 from [Podocoryne carnea]
Length = 178
Score = 137 bits (332), Expect = 8e-33
Identities = 58/129 (44%), Positives = 84/129 (65%)
Frame = +3
Query: 117 QLREYEVIGRKLPSENEPKPPLYKMRIFSPDPIVAKSRFWYFLRQLKKFKKTTGXXXXXX 296
+ +Y+V+GR LP+EN+ P +Y+M+++ + + AKS+FWYF+R+LKK KK+ G
Sbjct: 5 RFHQYQVVGRALPTENDEHPKIYRMKLWGRNEVCAKSKFWYFMRKLKKVKKSNGQMLAIN 64
Query: 297 XXXXXXXXXXXNFGIWLRYESRSGVHNMYREYRDLSVGGAVTQCYRDMGARHRARAHSIQ 476
N+GIWLRY+SR+G HNMY+EYRD ++ G V Q Y +M +RHR R IQ
Sbjct: 65 EIFEKNPTTIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGGVEQMYTEMASRHRVRFPCIQ 124
Query: 477 IIKVEVIKA 503
IIK + A
Sbjct: 125 IIKTATVPA 133
Score = 31.9 bits (69), Expect = 0.56
Identities = 13/21 (61%), Positives = 15/21 (71%)
Frame = +1
Query: 511 CRRPQVKQFHNSTIRFPLXKR 573
C+R KQFHNS I+FPL R
Sbjct: 136 CKREITKQFHNSKIKFPLVFR 156
>At2g35200.1 68415.m04317 expressed protein
Length = 201
Score = 30.3 bits (65), Expect = 1.7
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = +3
Query: 195 IFSPDPIVAKSRFWYFLRQLKKFKKT 272
+FSP P+ +K WYF +K F+++
Sbjct: 160 LFSPTPVTSKGNGWYFPSPIKVFRQS 185
>At4g02260.1 68417.m00307 RelA/SpoT protein, putative (RSH1)
identical to RSH1 (RelA/SpoT homolog) [Arabidopsis
thaliana] GI:7141304; contains Pfam profiles PF02824:
TGS domain, PF01966: HD domain, PF04607: Region found in
RelA / SpoT proteins
Length = 884
Score = 29.5 bits (63), Expect = 3.0
Identities = 18/68 (26%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
Frame = +3
Query: 18 IHXREFLKIFDVSVPVSA--DQVFQIKTPKMKAKGQLREYEVIGRKLPSENEPKPPLYKM 191
I +FL + V+ V + + + I +K+KG + +Y I ++L +PKP +
Sbjct: 359 IEDDQFLDLVTVNTDVRSVCKETYSIYKAALKSKGSINDYNQIAQQLRIVVKPKPSVGVG 418
Query: 192 RIFSPDPI 215
+ SP I
Sbjct: 419 PLCSPQQI 426
>At3g43870.1 68416.m04696 hypothetical protein
Length = 187
Score = 29.5 bits (63), Expect = 3.0
Identities = 15/51 (29%), Positives = 25/51 (49%)
Frame = -2
Query: 253 SCLRKYQKRDLATIGSGEKILILYKGGLGSFSEGSLRPITSYSLNCPLAFI 101
SC ++++ D+ TIG + KG + G +R T Y LN + F+
Sbjct: 4 SCFKEFRVADILTIGFKLHPYLTLKGLIEMKRRGLIRDTTGYILNGGITFL 54
>At3g43390.1 68416.m04592 hypothetical protein similar to At3g24380,
At5g36840, At5g35010, At3g42740, At4g05290, At2g14770,
At2g05560, At4g08880, At1g34730, At1g27790, At1g34740,
At1g27780, At5g36850, At3g42730, At1g52020, At3g24390,
At4g05280, At1g25886, At4g03300
Length = 1113
Score = 29.1 bits (62), Expect = 4.0
Identities = 17/45 (37%), Positives = 22/45 (48%)
Frame = +2
Query: 479 HQSGSNQGLLRVAVHRSNSSTTAPSDSHXPNVCXTTRDLIXXXLP 613
H G + +LRV+ R SST A + P+V T DL LP
Sbjct: 15 HGPGKEKRVLRVSPRRKRSSTKATEELGSPSVA-PTEDLTVEELP 58
>At1g26870.1 68414.m03277 no apical meristem (NAM) family protein
contains Pfam PF02365: No apical meristem (NAM) domain;
similar to GB:AAD22369, NAM stands for No Apicla
Meristem
Length = 425
Score = 28.3 bits (60), Expect = 7.0
Identities = 20/56 (35%), Positives = 27/56 (48%)
Frame = +3
Query: 108 AKGQLREYEVIGRKLPSENEPKPPLYKMRIFSPDPIVAKSRFWYFLRQLKKFKKTT 275
AKG ++ + +LPS +EP PP R F D V+ + W R KK TT
Sbjct: 136 AKGVKTDWMMHEFRLPSLSEPSPP--SKRFF--DSPVSPNDSWAICRIFKKTNTTT 187
>At5g58150.1 68418.m07278 leucine-rich repeat transmembrane protein
kinase, putative
Length = 785
Score = 27.9 bits (59), Expect = 9.2
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = -1
Query: 110 SLHFWSFYLKDLVSGNGNTDVKNLKEF 30
SL F+SF++K L S + NTD +L F
Sbjct: 8 SLLFFSFFVKHLTSLDPNTDAYHLSSF 34
>At5g36860.1 68418.m04416 Ulp1 protease family protein contains Pfam
profile PF02902: Ulp1 protease family, C-terminal
catalytic domain
Length = 1204
Score = 27.9 bits (59), Expect = 9.2
Identities = 16/45 (35%), Positives = 22/45 (48%)
Frame = +2
Query: 479 HQSGSNQGLLRVAVHRSNSSTTAPSDSHXPNVCXTTRDLIXXXLP 613
H G + +LRV+ R S+T A + P+V T DL LP
Sbjct: 15 HGPGKEKRVLRVSPRRKRSATKATEELGSPSVA-PTEDLTVEELP 58
>At4g05280.1 68417.m00799 Ulp1 protease family protein contains Pfam
profile PF02902: Ulp1 protease family, C-terminal
catalytic domain; similar to At3g24380, At5g36840,
At5g35010, At3g42740, At4g05290, At2g14770, At3g43390,
At2g05560, At4g08880, At1g34730, At1g27790, At1g34740,
At1g27780, At5g36850, At3g42730, At1g52020, At3g24390,
At1g25886, At4g03300
Length = 1312
Score = 27.9 bits (59), Expect = 9.2
Identities = 16/45 (35%), Positives = 22/45 (48%)
Frame = +2
Query: 479 HQSGSNQGLLRVAVHRSNSSTTAPSDSHXPNVCXTTRDLIXXXLP 613
H G + +LRV+ R S+T A + P+V T DL LP
Sbjct: 15 HGPGKEKRVLRVSPRRKRSATKATEELGSPSVA-PTEDLTVEELP 58
>At4g03300.1 68417.m00451 Ulp1 protease family protein contains Pfam
profile PF02902: Ulp1 protease family, C-terminal
catalytic domain; similar to At3g24380, At5g36840,
At5g35010, At3g42740, At4g05290, At2g14770, At3g43390,
At2g05560, At4g08880, At1g34730, At1g27790 , At1g34740,
At1g27780, At5g36850, At3g42730, At1g52020, At3g24390,
At4g05280, At1g25886
Length = 1285
Score = 27.9 bits (59), Expect = 9.2
Identities = 16/45 (35%), Positives = 22/45 (48%)
Frame = +2
Query: 479 HQSGSNQGLLRVAVHRSNSSTTAPSDSHXPNVCXTTRDLIXXXLP 613
H G + +LRV+ R S+T A + P+V T DL LP
Sbjct: 167 HGPGKEKRVLRVSPRRKRSATKATEELGSPSVA-PTEDLTVEELP 210
>At3g24390.1 68416.m03063 Ulp1 protease family protein contains Pfam
profile PF02902: Ulp1 protease family, C-terminal
catalytic domain; similar to At3g24380, At5g36840,
At5g35010, At3g42740, At4g05290, At2g14770, At3g43390,
At2g05560, At4g08880, At1g34730, At1g27790, At1g34740,
At1g27780, At5g36850, At3g42730, At1g52020, At4g05280,
At1g25886, At4g03300
Length = 1139
Score = 27.9 bits (59), Expect = 9.2
Identities = 16/45 (35%), Positives = 22/45 (48%)
Frame = +2
Query: 479 HQSGSNQGLLRVAVHRSNSSTTAPSDSHXPNVCXTTRDLIXXXLP 613
H G + +LRV+ R S+T A + P+V T DL LP
Sbjct: 15 HGPGKEKRVLRVSPRRKRSATKATEELGSPSVA-PTEDLTVEELP 58
>At1g54490.1 68414.m06215 5'-3' exoribonuclease (XRN4) identical to
XRN4 [Arabidopsis thaliana] GI:11875626; contains Pfam
domain PF03159: Putative 5'-3' exonuclease domain
Length = 947
Score = 27.9 bits (59), Expect = 9.2
Identities = 16/54 (29%), Positives = 29/54 (53%)
Frame = +3
Query: 45 FDVSVPVSADQVFQIKTPKMKAKGQLREYEVIGRKLPSENEPKPPLYKMRIFSP 206
F +V V+ D++FQ +T ++ E + R+ PSE P+P K+++ P
Sbjct: 389 FIQAVAVNEDKIFQKRTRIKQSMDNNEEMKQRSRRDPSEVPPEPIDDKIKLGEP 442
>At1g27780.1 68414.m03399 Ulp1 protease family protein similar to
At3g24380, At5g36840, At5g35010, At3g42740, At4g05290,
At2g14770, At3g43390, At2g05560, At4g08880, At1g34730,
At1g27790, At1g34740, At5g36850, At3g42730, At1g52020,
At3g24390, At4g05280, At1g25886, At4g03300; contains
Pfam profile PF02902: Ulp1 protease family, C-terminal
catalytic domain
Length = 1468
Score = 27.9 bits (59), Expect = 9.2
Identities = 16/45 (35%), Positives = 22/45 (48%)
Frame = +2
Query: 479 HQSGSNQGLLRVAVHRSNSSTTAPSDSHXPNVCXTTRDLIXXXLP 613
H G + +LRV+ R S+T A + P+V T DL LP
Sbjct: 15 HGPGKEKRVLRVSPRRKRSATKATEELGSPSVA-PTEDLTVEELP 58
>At1g25886.1 68414.m03180 Ulp1 protease family protein contains Pfam
profile PF02902: Ulp1 protease family, C-terminal
catalytic domain; similar to At3g24380, At5g36840,
At5g35010, At3g42740, At4g05290, At2g14770, At3g43390,
At2g05560, At4g08880, At1g34730, At1g27790, At1g34740,
At1g27780, At5g36850, At3g42730, At1g52020, At3g24390,
At4g05280, At4g03300
Length = 1201
Score = 27.9 bits (59), Expect = 9.2
Identities = 16/45 (35%), Positives = 22/45 (48%)
Frame = +2
Query: 479 HQSGSNQGLLRVAVHRSNSSTTAPSDSHXPNVCXTTRDLIXXXLP 613
H G + +LRV+ R S+T A + P+V T DL LP
Sbjct: 15 HGPGKEKRVLRVSPRRKRSATKATEELGSPSVA-PTEDLTVEELP 58
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,157,795
Number of Sequences: 28952
Number of extensions: 259422
Number of successful extensions: 740
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 660
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 723
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2009406400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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