Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP01_F_M10
(970 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1805.13 |rpl14||60S ribosomal protein L14|Schizosaccharomyce... 97 3e-21
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 48 2e-06
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 32 0.14
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 31 0.18
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 30 0.56
SPBC685.07c |rpl2701|rpl27-1|60S ribosomal protein L27|Schizosac... 30 0.56
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 29 0.75
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc... 29 0.75
SPCC74.05 |rpl2702|rpl27-2|60S ribosomal protein L27|Schizosacch... 29 1.3
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 28 1.7
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 27 3.0
SPCC622.18 |rpl6||60S ribosomal protein L6|Schizosaccharomyces p... 26 9.2
>SPAC1805.13 |rpl14||60S ribosomal protein L14|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 134
Score = 97.1 bits (231), Expect = 3e-21
Identities = 49/117 (41%), Positives = 65/117 (55%)
Frame = +2
Query: 101 FARYVEPGRVALVADGPLKGKLVSVVDVIDQTRALVDGPGSGVPRQQIRLNQLHLTKFRL 280
F RYVE GRV LV G GKL +VD++D RAL+D P S PRQ IR + LT +
Sbjct: 4 FKRYVEVGRVVLVTKGEYTGKLAVIVDIVDHKRALIDSPCSEFPRQVIRYGSVVLTHIVM 63
Query: 281 KYAFTAPTRLVRKAWTDAKLNEKWTESXWAQKLANKEKRXQMTXYDRFKLTAARVKR 451
K A + +V K W + KW S WA+KL K+ R Q+ +DRF + + +R
Sbjct: 64 KLPRGARSGIVAKKWKAQDVCNKWASSAWAKKLEAKKVRSQLNDFDRFAVMRLKKQR 120
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 48.0 bits (109), Expect = 2e-06
Identities = 28/103 (27%), Positives = 34/103 (33%), Gaps = 3/103 (2%)
Frame = +2
Query: 668 PLPXTPPPXPXPXPXPXXPXXXXXRAXAPPXXXSPRXXXXT---PHSXXPPGSPXXPPPT 838
P+P T PP P P P P APP +P + P P +P PP
Sbjct: 1035 PVPSTAPPVPIPTSTPPVPKSSSGAPSAPPPVPAPSSEIPSIPAPSGAPPVPAPSGIPPV 1094
Query: 839 XKPRXXTXXXPXRXIXQPPXPXXPXHSXXXXQXLPTPPPPXXS 967
KP P + PP P + PP P S
Sbjct: 1095 PKPSVAAPPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPS 1137
Score = 33.5 bits (73), Expect = 0.046
Identities = 21/78 (26%), Positives = 22/78 (28%)
Frame = +3
Query: 723 PXXXXPGPXPPPXXFPHAVSXGXPTXXXPLXRLXPPPPPXNPXPXQXLXLXAQXXNRXXP 902
P P P P P V G P P P P P P + A
Sbjct: 1117 PSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSS 1176
Query: 903 XXPPTPXXXIXXSPPPPP 956
PP P P PPP
Sbjct: 1177 GIPPVPKPAAGVPPVPPP 1194
Score = 31.9 bits (69), Expect = 0.14
Identities = 26/100 (26%), Positives = 27/100 (27%)
Frame = +2
Query: 668 PLPXTPPPXPXPXPXPXXPXXXXXRAXAPPXXXSPRXXXXTPHSXXPPGSPXXPPPTXKP 847
P P PP P P P PP P P S P PP K
Sbjct: 961 PRPAAPPSIPPPLPVSNI---LSSPTSEPPKDHPPSAPLSKPVSTSPAAPLARVPPVPKL 1017
Query: 848 RXXTXXXPXRXIXQPPXPXXPXHSXXXXQXLPTPPPPXXS 967
P PP P P + TPP P S
Sbjct: 1018 SSKAPPVPLPSADAPPIP-VPSTAPPVPIPTSTPPVPKSS 1056
Score = 31.1 bits (67), Expect = 0.24
Identities = 24/95 (25%), Positives = 26/95 (27%), Gaps = 1/95 (1%)
Frame = +2
Query: 686 PPXPXPXPXPXXPXXXXXRAXAPPXXXSPRXXXXTPHSXXPP-GSPXXPPPTXKPRXXTX 862
PP P P P P P +P P PP +P PP KP
Sbjct: 1112 PPVPAPSGAPPVPKPSVAAPPVPVPSGAP--PVPKPSVAAPPVPAPSGAPPVPKPSVAAP 1169
Query: 863 XXPXRXIXQPPXPXXPXHSXXXXQXLPTPPPPXXS 967
P PP P PP P S
Sbjct: 1170 PVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPS 1204
Score = 29.9 bits (64), Expect = 0.56
Identities = 22/62 (35%), Positives = 23/62 (37%), Gaps = 6/62 (9%)
Frame = +2
Query: 671 LPXTPPPX---PXPXPXPXXPXXXXXRAXAP--PXXXSPRXXXXTPHSXXP-PGSPXXPP 832
+P PPP P P P P A AP P S TP S P P S P
Sbjct: 1207 VPPVPPPSTAPPVPTPSAGLPPVPVPTAKAPPVPAPSSEAPSVSTPRSSVPSPHSNASPS 1266
Query: 833 PT 838
PT
Sbjct: 1267 PT 1268
Score = 27.5 bits (58), Expect = 3.0
Identities = 21/94 (22%), Positives = 24/94 (25%)
Frame = +2
Query: 686 PPXPXPXPXPXXPXXXXXRAXAPPXXXSPRXXXXTPHSXXPPGSPXXPPPTXKPRXXTXX 865
PP P P P P P +P + + P PP KP
Sbjct: 1131 PPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPP 1190
Query: 866 XPXRXIXQPPXPXXPXHSXXXXQXLPTPPPPXXS 967
P PP P PP P S
Sbjct: 1191 VPP-PSEAPPVPKPSVGVPPVPPPSTAPPVPTPS 1223
Score = 26.2 bits (55), Expect = 6.9
Identities = 17/53 (32%), Positives = 19/53 (35%)
Frame = +2
Query: 686 PPXPXPXPXPXXPXXXXXRAXAPPXXXSPRXXXXTPHSXXPPGSPXXPPPTXK 844
PP P P P P PP +P TP + PP P PT K
Sbjct: 1189 PPVPPPSEAPPVPKPSVGVPPVPPPSTAP--PVPTPSAGLPP----VPVPTAK 1235
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 31.9 bits (69), Expect = 0.14
Identities = 17/54 (31%), Positives = 18/54 (33%)
Frame = +2
Query: 806 PPGSPXXPPPTXKPRXXTXXXPXRXIXQPPXPXXPXHSXXXXQXLPTPPPPXXS 967
PP P PT P P + PP P P P PPPP S
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVS 786
Score = 29.1 bits (62), Expect = 0.98
Identities = 15/38 (39%), Positives = 16/38 (42%)
Frame = +3
Query: 720 PPXXXXPGPXPPPXXFPHAVSXGXPTXXXPLXRLXPPP 833
PP GP PPP P AVS G P + P P
Sbjct: 767 PPGVAGAGPPPPPPP-PPAVSAGGSRYYAPAPQAEPEP 803
Score = 27.1 bits (57), Expect = 4.0
Identities = 13/39 (33%), Positives = 14/39 (35%)
Frame = +3
Query: 738 PGPXPPPXXFPHAVSXGXPTXXXPLXRLXPPPPPXNPXP 854
P P P P P + G P P PPP P P
Sbjct: 744 PAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPP 782
Score = 26.2 bits (55), Expect = 6.9
Identities = 16/44 (36%), Positives = 17/44 (38%)
Frame = +3
Query: 825 PPPPPXNPXPXQXLXLXAQXXNRXXPXXPPTPXXXIXXSPPPPP 956
PPPPP P + A P PP P PPPPP
Sbjct: 732 PPPPP----PAVIVPTPAPAP---IPVPPPAPIMGGPPPPPPPP 768
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 31.5 bits (68), Expect = 0.18
Identities = 23/94 (24%), Positives = 24/94 (25%)
Frame = +2
Query: 674 PXTPPPXPXPXPXPXXPXXXXXRAXAPPXXXSPRXXXXTPHSXXPPGSPXXPPPTXKPRX 853
P PP P P R PP P P S P P PP
Sbjct: 389 PAPPPAIPGRSAPALPPLGNASRTSTPPVPTPP----SLPPSAPPSLPPSAPPSLPMGAP 444
Query: 854 XTXXXPXRXIXQPPXPXXPXHSXXXXQXLPTPPP 955
P PP P + P PPP
Sbjct: 445 AAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPPP 478
Score = 30.7 bits (66), Expect = 0.32
Identities = 22/83 (26%), Positives = 24/83 (28%), Gaps = 2/83 (2%)
Frame = +3
Query: 720 PPXXXXPGPXPPPXXFPHAVSXGXPTXXXPLXRLXPPPPPXNPXPXQXLXLXAQXXNRXX 899
PP P PPP P P P PPP P +R
Sbjct: 354 PPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGRSAPALPPLGNASRTS 413
Query: 900 PXXPPTPXXXIXXSPP--PPPXP 962
PTP +PP PP P
Sbjct: 414 TPPVPTPPSLPPSAPPSLPPSAP 436
Score = 29.9 bits (64), Expect = 0.56
Identities = 18/68 (26%), Positives = 20/68 (29%)
Frame = +3
Query: 750 PPPXXFPHAVSXGXPTXXXPLXRLXPPPPPXNPXPXQXLXLXAQXXNRXXPXXPPTPXXX 929
PPP P + G P PPPP P + R P PP
Sbjct: 311 PPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAP 370
Query: 930 IXXSPPPP 953
PPP
Sbjct: 371 STGRQPPP 378
Score = 29.9 bits (64), Expect = 0.56
Identities = 25/101 (24%), Positives = 28/101 (27%), Gaps = 9/101 (8%)
Frame = +2
Query: 683 PPPXPXPXPXPXXPXXXXXRAXAPPXXXSPRXXXXTPHSXXPPGS------PXXPPPTXK 844
PPP P P + + P PR T P S P PPP
Sbjct: 337 PPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIP 396
Query: 845 PRXXTXXXPXRXIXQ---PPXPXXPXHSXXXXQXLPTPPPP 958
R P + PP P P LP PP
Sbjct: 397 GRSAPALPPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPP 437
Score = 27.9 bits (59), Expect = 2.3
Identities = 19/69 (27%), Positives = 21/69 (30%)
Frame = +2
Query: 749 APPXXXSPRXXXXTPHSXXPPGSPXXPPPTXKPRXXTXXXPXRXIXQPPXPXXPXHSXXX 928
APP P P P S PPP P T P +P P +
Sbjct: 229 APPIP--PSIPSSRPPERVPSLSAPAPPPIPPPSNGTVSSPPNSPPRPIAPVSMNPAINS 286
Query: 929 XQXLPTPPP 955
P PPP
Sbjct: 287 TSKPPLPPP 295
Score = 27.9 bits (59), Expect = 2.3
Identities = 21/89 (23%), Positives = 27/89 (30%), Gaps = 8/89 (8%)
Frame = +3
Query: 720 PPXXXXPGPXPPPXXFPHAVSXGXPTXXXPLXRLXPPPPPXNPXPXQXLXLXAQXXNRXX 899
PP PP P + P P PP P P + + +
Sbjct: 230 PPIPPSIPSSRPPERVPSLSAPAPPPIPPPSNGTVSSPPNSPPRPIAPVSMNPAINSTSK 289
Query: 900 PXXPPTPXXXIXXS--------PPPPPXP 962
P PP P + + PPPPP P
Sbjct: 290 PPLPP-PSSRVSAAALAANKKRPPPPPPP 317
Score = 27.9 bits (59), Expect = 2.3
Identities = 20/70 (28%), Positives = 24/70 (34%), Gaps = 1/70 (1%)
Frame = +3
Query: 750 PPPXXFPHAVSXGXPTXXXPLXRLXPPPPPXNPXPXQXLXLXAQXXNRXXPXXP-PTPXX 926
PPP P + + G P R PPPPP P +R P P P
Sbjct: 337 PPPPPPPRSNAAGS-IPLPPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAI 395
Query: 927 XIXXSPPPPP 956
+P PP
Sbjct: 396 PGRSAPALPP 405
Score = 27.9 bits (59), Expect = 2.3
Identities = 24/96 (25%), Positives = 29/96 (30%)
Frame = +2
Query: 668 PLPXTPPPXPXPXPXPXXPXXXXXRAXAPPXXXSPRXXXXTPHSXXPPGSPXXPPPTXKP 847
PL + P P P P PP + R TP PP P PP+ P
Sbjct: 378 PLSSSRAVSNPPAPPPAIPGRSAPAL--PPLGNASRTS--TPPVPTPPSLPPSAPPSLPP 433
Query: 848 RXXTXXXPXRXIXQPPXPXXPXHSXXXXQXLPTPPP 955
P PP P + +P PP
Sbjct: 434 -SAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPP 468
Score = 27.5 bits (58), Expect = 3.0
Identities = 14/44 (31%), Positives = 16/44 (36%)
Frame = +3
Query: 825 PPPPPXNPXPXQXLXLXAQXXNRXXPXXPPTPXXXIXXSPPPPP 956
PPPPP + + N P PP P S P PP
Sbjct: 312 PPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPP 355
Score = 27.5 bits (58), Expect = 3.0
Identities = 20/73 (27%), Positives = 24/73 (32%)
Frame = +3
Query: 744 PXPPPXXFPHAVSXGXPTXXXPLXRLXPPPPPXNPXPXQXLXLXAQXXNRXXPXXPPTPX 923
P P P P + P P + P P P P + A P PP P
Sbjct: 416 PVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLP-PSAPI---APPLPAGMPAAPPLP- 470
Query: 924 XXIXXSPPPPPXP 962
+PPP P P
Sbjct: 471 -PAAPAPPPAPAP 482
Score = 26.2 bits (55), Expect = 6.9
Identities = 20/81 (24%), Positives = 25/81 (30%), Gaps = 6/81 (7%)
Frame = +3
Query: 723 PXXXXPGPXPPPXXFPHAVSXGXPTXXXPLXRLXPPPP------PXNPXPXQXLXLXAQX 884
P P P P P VS + P+ + P P P P + A
Sbjct: 246 PSLSAPAPPPIPPPSNGTVSSPPNSPPRPIAPVSMNPAINSTSKPPLPPPSSRVSAAALA 305
Query: 885 XNRXXPXXPPTPXXXIXXSPP 947
N+ P PP P PP
Sbjct: 306 ANKKRPPPPPPPSRRNRGKPP 326
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 29.9 bits (64), Expect = 0.56
Identities = 21/87 (24%), Positives = 26/87 (29%), Gaps = 4/87 (4%)
Frame = +2
Query: 662 FXPLPXTPPPXPXPXPXPXXPXXXXXRAXAPPXXXSPRXXXXTPHSXXPPGSPXXP--PP 835
+ P P P P P P P P + P + + PP +P P PP
Sbjct: 227 YTPKQADPLPAPPPPPPPTLPPQSTNTSQLPMPSRNVNNLGSQVNIPPPPATPSQPPRPP 286
Query: 836 TXKPRXXTXXXP--XRXIXQPPXPXXP 910
T T PP P P
Sbjct: 287 TNASTRSTGTSSSMAHSYDSPPSPSSP 313
Score = 26.6 bits (56), Expect = 5.3
Identities = 17/56 (30%), Positives = 17/56 (30%)
Frame = +2
Query: 791 PHSXXPPGSPXXPPPTXKPRXXTXXXPXRXIXQPPXPXXPXHSXXXXQXLPTPPPP 958
P S P S P P P QPP P S P PPPP
Sbjct: 143 PASQEPSASGVNAPTVSAPNSMVSPPPS---FQPPSAAAPATSLPSDYNPPPPPPP 195
Score = 26.6 bits (56), Expect = 5.3
Identities = 23/80 (28%), Positives = 26/80 (32%), Gaps = 9/80 (11%)
Frame = +3
Query: 750 PPPXXFPHAVSXGXPTXXXPLXRLXPPPPPXNPXPXQXLXLXAQXXN------RXXPXXP 911
PPP P S P P PPPPP P + + P P
Sbjct: 167 PPPSFQPP--SAAAPATSLPSDYNPPPPPPPPPAVEDQAADANEPDDYYSSGRAVSPEIP 224
Query: 912 PT---PXXXIXXSPPPPPXP 962
PT +PPPPP P
Sbjct: 225 PTYTPKQADPLPAPPPPPPP 244
>SPBC685.07c |rpl2701|rpl27-1|60S ribosomal protein
L27|Schizosaccharomyces pombe|chr 2|||Manual
Length = 136
Score = 29.9 bits (64), Expect = 0.56
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = +2
Query: 107 RYVEPGRVALVADGPLKGKLVSVVDVIDQ 193
+ ++PG+VAL+ G GK V ++ IDQ
Sbjct: 3 KILKPGKVALITRGRFAGKKVVILQAIDQ 31
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 29.5 bits (63), Expect = 0.75
Identities = 22/73 (30%), Positives = 26/73 (35%), Gaps = 1/73 (1%)
Frame = +2
Query: 743 AXAPPXXXSPRXXXXTPHSXXPPGSPXXPPPTXKPRXXTXXXPXRXIXQPPX-PXXPXHS 919
A APP +P+ P S P S P P P + P PP P P S
Sbjct: 127 APAPP---TPQSELRPPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKS 183
Query: 920 XXXXQXLPTPPPP 958
LP+ PP
Sbjct: 184 PPSAPSLPSAVPP 196
Score = 28.7 bits (61), Expect = 1.3
Identities = 20/61 (32%), Positives = 20/61 (32%), Gaps = 5/61 (8%)
Frame = +2
Query: 668 PLPXTPPP-----XPXPXPXPXXPXXXXXRAXAPPXXXSPRXXXXTPHSXXPPGSPXXPP 832
P P PPP P P P P A SP P S PP P PP
Sbjct: 145 PRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSLP-SAVPPMPPKVPP 203
Query: 833 P 835
P
Sbjct: 204 P 204
Score = 27.9 bits (59), Expect = 2.3
Identities = 17/57 (29%), Positives = 20/57 (35%), Gaps = 3/57 (5%)
Frame = +2
Query: 797 SXXPPGSPXXPPPTXKPRXXTXXXPXRXIXQP---PXPXXPXHSXXXXQXLPTPPPP 958
S PP +P P P + R T P I P P P + LP P P
Sbjct: 121 SAAPPSAPAPPTPQSELRPPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQP 177
>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 587
Score = 29.5 bits (63), Expect = 0.75
Identities = 21/94 (22%), Positives = 26/94 (27%)
Frame = +2
Query: 674 PXTPPPXPXPXPXPXXPXXXXXRAXAPPXXXSPRXXXXTPHSXXPPGSPXXPPPTXKPRX 853
P P P P P + PP + P + P + P T P
Sbjct: 435 PSNPAPWQQPAAPQSAPALSMNPSSLPPWQQPTQQSAVQPSNLVPSQNAPFIPGTSAPLP 494
Query: 854 XTXXXPXRXIXQPPXPXXPXHSXXXXQXLPTPPP 955
T P + PP P P P PP
Sbjct: 495 PTTFAPP-GVPLPPIPGAPGMPNLNMSQPPMVPP 527
>SPCC74.05 |rpl2702|rpl27-2|60S ribosomal protein
L27|Schizosaccharomyces pombe|chr 3|||Manual
Length = 136
Score = 28.7 bits (61), Expect = 1.3
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = +2
Query: 107 RYVEPGRVALVADGPLKGKLVSVVDVIDQ 193
+ ++PG+VALV G GK V ++ +DQ
Sbjct: 3 KILKPGKVALVTRGRFAGKKVVILQNVDQ 31
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 28.3 bits (60), Expect = 1.7
Identities = 19/56 (33%), Positives = 20/56 (35%)
Frame = -2
Query: 834 GGGXXGXPGGXXEWGVXXXXRGEXXXGGAXARXXXXXGXXGXGXGXGXGGGVXGRG 667
GGG G P G +G GE G G G G G GGG G G
Sbjct: 194 GGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPG-GFGGGPGGFG 248
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 27.5 bits (58), Expect = 3.0
Identities = 10/21 (47%), Positives = 10/21 (47%)
Frame = +3
Query: 900 PXXPPTPXXXIXXSPPPPPXP 962
P PP P PPPPP P
Sbjct: 10 PPPPPPPGFEPPSQPPPPPPP 30
Score = 25.8 bits (54), Expect = 9.2
Identities = 10/21 (47%), Positives = 10/21 (47%)
Frame = +3
Query: 900 PXXPPTPXXXIXXSPPPPPXP 962
P PP P S PPPP P
Sbjct: 9 PPPPPPPPGFEPPSQPPPPPP 29
Score = 23.0 bits (47), Expect(2) = 4.6
Identities = 7/10 (70%), Positives = 8/10 (80%)
Frame = +2
Query: 806 PPGSPXXPPP 835
PPG+P PPP
Sbjct: 5 PPGNPPPPPP 14
Score = 21.8 bits (44), Expect(2) = 4.6
Identities = 9/22 (40%), Positives = 9/22 (40%)
Frame = +2
Query: 890 PPXPXXPXHSXXXXQXLPTPPP 955
PP P P Q P PPP
Sbjct: 9 PPPPPPPPGFEPPSQPPPPPPP 30
>SPCC622.18 |rpl6||60S ribosomal protein L6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 195
Score = 25.8 bits (54), Expect = 9.2
Identities = 15/44 (34%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
Frame = +2
Query: 119 PGRVALVADGPLKGKLVSVVDVIDQTRALVDGP--GSGVPRQQI 244
PG V ++ G +GK V V+ ++ T +V GP +GVP +++
Sbjct: 54 PGTVCILLAGRFRGKRVVVLSQLEDT-LVVTGPYKVNGVPIRRV 96
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,924,203
Number of Sequences: 5004
Number of extensions: 54655
Number of successful extensions: 259
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 203
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 497299314
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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