Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_M10
         (970 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       28   0.15 
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   4.2  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   4.2  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    23   5.5  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    22   9.6  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 27.9 bits (59), Expect = 0.15
 Identities = 17/44 (38%), Positives = 17/44 (38%), Gaps = 2/44 (4%)
 Frame = +3

Query: 723 PXXXXPGPXPPPXXFPHAVSXGXPTXXXPLXRLXPPP--PPXNP 848
           P    PGP P P   P A   G P    P     PPP  PP  P
Sbjct: 16  PSSGAPGPQPSPHQSPQAPQRGSP----PNPSQGPPPGGPPGAP 55



 Score = 26.6 bits (56), Expect = 0.34
 Identities = 13/48 (27%), Positives = 15/48 (31%)
 Frame = +2

Query: 749 APPXXXSPRXXXXTPHSXXPPGSPXXPPPTXKPRXXTXXXPXRXIXQP 892
           AP    SP      P    PP     PPP   P       P + +  P
Sbjct: 20  APGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPPSQNPSQMMISP 67


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.0 bits (47), Expect = 4.2
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = +3

Query: 279 SNTRSQPLLVL*GKRGQMLNSM 344
           + T S+P+LVL G R ++L S+
Sbjct: 273 AQTGSEPMLVLSGPRTRLLGSV 294


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.0 bits (47), Expect = 4.2
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = +3

Query: 279 SNTRSQPLLVL*GKRGQMLNSM 344
           + T S+P+LVL G R ++L S+
Sbjct: 273 AQTGSEPMLVLSGPRTRLLGSV 294


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 22.6 bits (46), Expect = 5.5
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = -2

Query: 243 ICCLGTPLPGPSTSARVWSITSTTLTNF 160
           I CL  P PG S ++    +    L+N+
Sbjct: 5   ISCLVAPFPGASANSEAKRLYDDLLSNY 32


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 21.8 bits (44), Expect = 9.6
 Identities = 11/36 (30%), Positives = 14/36 (38%)
 Frame = +2

Query: 617 RYVTKTDFTKXXQXYFXPLPXTPPPXPXPXPXPXXP 724
           R VTK   T   + +   +  T PP P     P  P
Sbjct: 227 RAVTKLPDTSMAKSFVRKVHATKPPKPQTKTKPTSP 262


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 236,181
Number of Sequences: 438
Number of extensions: 7405
Number of successful extensions: 15
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 31927896
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)