Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_M08
         (885 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_28916| Best HMM Match : No HMM Matches (HMM E-Value=.)              72   7e-13
SB_25657| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0)              71   9e-13
SB_55143| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0)              62   8e-10
SB_48525| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0)              60   3e-09
SB_38742| Best HMM Match : No HMM Matches (HMM E-Value=.)              52   8e-07
SB_24154| Best HMM Match : Glyco_hydro_18 (HMM E-Value=2.2e-32)        39   0.005
SB_28937| Best HMM Match : 7tm_1 (HMM E-Value=2.1e-08)                 30   2.9  
SB_54874| Best HMM Match : Toxin_28 (HMM E-Value=1.3)                  29   3.8  
SB_12492| Best HMM Match : IncA (HMM E-Value=0.15)                     29   5.0  
SB_27940| Best HMM Match : IncA (HMM E-Value=0.41)                     29   6.6  
SB_15804| Best HMM Match : Toxin_28 (HMM E-Value=8.6)                  29   6.6  
SB_11550| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.6  
SB_35539| Best HMM Match : RVT_1 (HMM E-Value=1.7e-07)                 28   8.7  
SB_28600| Best HMM Match : EGF_CA (HMM E-Value=4.2e-40)                28   8.7  

>SB_28916| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 807

 Score = 71.7 bits (168), Expect = 7e-13
 Identities = 40/102 (39%), Positives = 59/102 (57%), Gaps = 1/102 (0%)
 Frame = +1

Query: 247 CTHLLYGYAGIQPDTYKLVSLNENLDIDRTHDNYRAITSLKAKYPGLTVLLSVGGDADTE 426
           CTH++Y +A I P T K+ +   N   DR    Y+ I  LK K P L  LL+VGG     
Sbjct: 427 CTHIVYAFAKIDPATNKIGTYEWN--DDRL---YKEINDLKLKNPSLKTLLAVGGWNHES 481

Query: 427 EP-EKYNLLLESQQARTAFINSGVLLAEQYGFDGIDLAWQFP 549
            P   ++ ++ S+  RT FI+S + L+++Y FDG DL W++P
Sbjct: 482 GPVSPFSQMVASKSNRTTFISSLLQLSDKYDFDGFDLDWEYP 523


>SB_25657| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0)
          Length = 829

 Score = 71.3 bits (167), Expect = 9e-13
 Identities = 37/126 (29%), Positives = 67/126 (53%), Gaps = 3/126 (2%)
 Frame = +1

Query: 247 CTHLLYGYAGIQPDTYKLVSLNENLDIDRTHDNYRAITSLKAKYPGLTVLLSVGGDADTE 426
           CTH+L+ +A +   T+KL    EN      H+ Y+ I +LK   P L   ++VGG    E
Sbjct: 50  CTHILFSFAKVNQTTHKLDIYEEN-----DHELYQRINALKKINPKLKTQIAVGGWTHEE 104

Query: 427 EPEKYNLLLESQQARTAFINSGVLLAEQYGFDGIDLAWQFPRVK---PKKIRSTWGSLWH 597
           +   ++ ++ +++ R  FI S +     +GFDG+DL W++P ++   PK  +  +  L  
Sbjct: 105 KNSPFSKMVATKEKRAIFIKSAIETLRTHGFDGLDLDWEYPGMRGGSPKSDKGRFTLLCR 164

Query: 598 GIKKTF 615
            +++ F
Sbjct: 165 ELREAF 170



 Score = 59.7 bits (138), Expect = 3e-09
 Identities = 30/113 (26%), Positives = 58/113 (51%)
 Frame = +1

Query: 247 CTHLLYGYAGIQPDTYKLVSLNENLDIDRTHDNYRAITSLKAKYPGLTVLLSVGGDADTE 426
           CTH+++ ++ +   T+ +    +N       D Y+ I +LK   P L   ++VGG    E
Sbjct: 435 CTHVIHSFSKVNLTTHVMEKYEKN-----DFDLYKRINALKKINPKLKTQIAVGGWTHEE 489

Query: 427 EPEKYNLLLESQQARTAFINSGVLLAEQYGFDGIDLAWQFPRVKPKKIRSTWG 585
           +   ++ ++ +++ R  FI S +      GFDG+DL W++P ++    +S  G
Sbjct: 490 KNSPFSKMVATKEKRAIFIKSAIETLRTNGFDGLDLDWEYPGMRGGSPKSDKG 542


>SB_55143| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0)
          Length = 270

 Score = 61.7 bits (143), Expect = 8e-10
 Identities = 34/114 (29%), Positives = 57/114 (50%), Gaps = 1/114 (0%)
 Frame = +1

Query: 220 WTSXPALSFCTHLLYGYAGI-QPDTYKLVSLNENLDIDRTHDNYRAITSLKAKYPGLTVL 396
           W        CTHL+Y +A I Q +   +   N+    D+ +  + A   LK K P L  L
Sbjct: 39  WPEDIPADLCTHLMYSFAKINQKNELAMYEWND----DKLYPRFNA---LKQKNPELKTL 91

Query: 397 LSVGGDADTEEPEKYNLLLESQQARTAFINSGVLLAEQYGFDGIDLAWQFPRVK 558
           L+VGG         ++ ++++   R  FI+S + +   +GFDG+DL W++P  +
Sbjct: 92  LAVGGWNHENANSPFSRMVKTAATRKVFIDSVIRILRTWGFDGLDLDWEYPATR 145


>SB_48525| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0)
          Length = 569

 Score = 59.7 bits (138), Expect = 3e-09
 Identities = 32/110 (29%), Positives = 53/110 (48%), Gaps = 2/110 (1%)
 Frame = +1

Query: 226 SXPALSFCTHLLYGYAGIQPDTYKLVSLNENLDIDRTHDN--YRAITSLKAKYPGLTVLL 399
           S   +   T LL G+A     +  +      L +   +D+  Y+    LK K PGL  LL
Sbjct: 145 SNKTMQLLTLLLLGFASFAAASNYVHRCRHTLAMFEWNDDKLYKEFNDLKLKNPGLKTLL 204

Query: 400 SVGGDADTEEPEKYNLLLESQQARTAFINSGVLLAEQYGFDGIDLAWQFP 549
           +VGG         ++ ++ +  +R  FI+S + +  Q+ FDG DL W++P
Sbjct: 205 AVGGWNHENYKSPFSRMVRTAASRKVFIDSSIAMLRQWNFDGFDLDWEYP 254


>SB_38742| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 438

 Score = 51.6 bits (118), Expect = 8e-07
 Identities = 31/103 (30%), Positives = 50/103 (48%)
 Frame = +1

Query: 241 SFCTHLLYGYAGIQPDTYKLVSLNENLDIDRTHDNYRAITSLKAKYPGLTVLLSVGGDAD 420
           S CTH++Y +A +  D  KL     N   D     Y+ +  LK+    +  LL+VGG   
Sbjct: 48  SLCTHIVYAFAKMNADNSKLAMFEWN---DAAM--YKKVNDLKSS-SNMKTLLAVGGWNM 101

Query: 421 TEEPEKYNLLLESQQARTAFINSGVLLAEQYGFDGIDLAWQFP 549
              P  +  ++ +   R  FI+  +L    + FDG+DL W++P
Sbjct: 102 GSGP--FQDMVSTASRRKIFIDDAILFLRNHMFDGLDLDWEYP 142


>SB_24154| Best HMM Match : Glyco_hydro_18 (HMM E-Value=2.2e-32)
          Length = 561

 Score = 39.1 bits (87), Expect = 0.005
 Identities = 20/68 (29%), Positives = 35/68 (51%)
 Frame = +1

Query: 346 YRAITSLKAKYPGLTVLLSVGGDADTEEPEKYNLLLESQQARTAFINSGVLLAEQYGFDG 525
           Y+ +  LK+    +  LL+VGG      P  +  ++ +   R  FI+  +L    + FDG
Sbjct: 2   YKKVNDLKSS-SNMKTLLAVGGWNMGSGP--FQDMVSTASRRKIFIDDAILFLRNHMFDG 58

Query: 526 IDLAWQFP 549
           +DL W++P
Sbjct: 59  LDLDWEYP 66


>SB_28937| Best HMM Match : 7tm_1 (HMM E-Value=2.1e-08)
          Length = 1258

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 16/35 (45%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
 Frame = -2

Query: 746  INVGXTVTPSCXLGLWIKACFNS---RTRAVKPSR 651
            + VG  VT SC L +WIK  FN      RAV  +R
Sbjct: 1126 VGVGVLVTISCYLAIWIKLRFNKPFLNRRAVPDTR 1160


>SB_54874| Best HMM Match : Toxin_28 (HMM E-Value=1.3)
          Length = 506

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
 Frame = -2

Query: 524 PSKPYCSANSTPELMKAVRACC--DSSRRLYFSGSSVSASPPTDN 396
           P  P C A S+ E + ++R     D  RR+ F G  V   PP  N
Sbjct: 384 PDIPICVAASSSEFVSSIRIWIRDDRGRRVDFKGKPVRLCPPPAN 428


>SB_12492| Best HMM Match : IncA (HMM E-Value=0.15)
          Length = 497

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
 Frame = -3

Query: 343 CRVFGLCPGSRLRTPAYR-CQAGYRHSRTAS--GCRTTERDXRSNGSMR 206
           CR+F  CP   L+T + + C  GY  +R  S  G     +D R  G ++
Sbjct: 393 CRLFIYCPSCDLQTSSIKVCIGGYETARIISRRGTEAYRKDVRQLGKLQ 441


>SB_27940| Best HMM Match : IncA (HMM E-Value=0.41)
          Length = 418

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 16/45 (35%), Positives = 20/45 (44%), Gaps = 2/45 (4%)
 Frame = -2

Query: 524 PSKPYCSANSTPELMKAVRACC--DSSRRLYFSGSSVSASPPTDN 396
           P  P C A S  E + ++R     D  RR+ F G  V   PP  N
Sbjct: 183 PDIPICVAASPSEFVSSIRIWIRDDRGRRVDFKGKPVRLCPPPAN 227


>SB_15804| Best HMM Match : Toxin_28 (HMM E-Value=8.6)
          Length = 329

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 16/45 (35%), Positives = 20/45 (44%), Gaps = 2/45 (4%)
 Frame = -2

Query: 524 PSKPYCSANSTPELMKAVRACC--DSSRRLYFSGSSVSASPPTDN 396
           P  P C A S  E + ++R     D  RR+ F G  V   PP  N
Sbjct: 183 PDIPICVAASPSEFVSSIRIWIRDDRGRRVDFKGKPVRLCPPPAN 227


>SB_11550| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 418

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 16/45 (35%), Positives = 20/45 (44%), Gaps = 2/45 (4%)
 Frame = -2

Query: 524 PSKPYCSANSTPELMKAVRACC--DSSRRLYFSGSSVSASPPTDN 396
           P  P C A S  E + ++R     D  RR+ F G  V   PP  N
Sbjct: 183 PDIPICVAASPSEFVSSIRIWISDDRGRRVDFKGKPVRLCPPPAN 227


>SB_35539| Best HMM Match : RVT_1 (HMM E-Value=1.7e-07)
          Length = 1105

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = +1

Query: 181 GAMSENLKPACCRWTSXPALSFCTHLLYGYAGIQPDT 291
           G     LKP C ++TS      C+H+L    GI PD+
Sbjct: 253 GGDHSGLKPYCRQFTSGAEDYSCSHVLDRDLGIMPDS 289


>SB_28600| Best HMM Match : EGF_CA (HMM E-Value=4.2e-40)
          Length = 1042

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
 Frame = +1

Query: 340 DNYRAITSLKAKYPGLT---VLLSVGGDADTEEPEKYNL 447
           DNY +   +   YP  T   V+LS  GDA T   +KY L
Sbjct: 112 DNYASCKLIPLTYPYYTPPVVILSANGDASTLPSDKYAL 150


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,738,583
Number of Sequences: 59808
Number of extensions: 506787
Number of successful extensions: 1386
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1274
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1381
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2526446612
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)