Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP01_F_M07
(851 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical ... 32 0.60
AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical ... 31 1.4
AF106580-3|AAC78205.1| 881|Caenorhabditis elegans Temporarily a... 30 1.8
Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical pr... 29 5.5
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 28 7.3
U41543-12|AAZ91345.1| 401|Caenorhabditis elegans Groundhog (hed... 28 7.3
U41543-6|AAB37023.1| 2018|Caenorhabditis elegans Hypothetical pr... 28 7.3
U39852-7|AAK39260.1| 240|Caenorhabditis elegans Ground-like (gr... 28 7.3
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 28 7.3
Z34533-1|CAA84302.3| 730|Caenorhabditis elegans Hypothetical pr... 28 9.7
>AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical
protein F59E12.9 protein.
Length = 1621
Score = 31.9 bits (69), Expect = 0.60
Identities = 15/37 (40%), Positives = 16/37 (43%)
Frame = +1
Query: 682 PPPPPXXXXXKKXXXXXKXXXPPPXPPXFSKXLXPPP 792
PPPPP K PPP PP FS + PP
Sbjct: 1356 PPPPPPPPTMSKAPTGVPLPVPPP-PPLFSPSMILPP 1391
>AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical
protein Y48G9A.4 protein.
Length = 1115
Score = 30.7 bits (66), Expect = 1.4
Identities = 13/37 (35%), Positives = 15/37 (40%)
Frame = +1
Query: 685 PPPPXXXXXKKXXXXXKXXXPPPXPPXFSKXLXPPPL 795
PPPP K+ P P PP S PPP+
Sbjct: 511 PPPPAPGPHKEQRRSTSKDPPRPAPPPVSSIPPPPPI 547
Score = 29.5 bits (63), Expect = 3.2
Identities = 15/47 (31%), Positives = 15/47 (31%), Gaps = 1/47 (2%)
Frame = +1
Query: 655 PXXXPXKXFPPPPPXXXXXKKXXXXXKXXXPPPXP-PXFSKXLXPPP 792
P P PPPPP PPP P P PPP
Sbjct: 533 PAPPPVSSIPPPPPIAGLLAANGTNVPIPPPPPPPLPQNLSGAPPPP 579
>AF106580-3|AAC78205.1| 881|Caenorhabditis elegans Temporarily
assigned gene nameprotein 268 protein.
Length = 881
Score = 30.3 bits (65), Expect = 1.8
Identities = 15/41 (36%), Positives = 16/41 (39%)
Frame = +1
Query: 673 KXFPPPPPXXXXXKKXXXXXKXXXPPPXPPXFSKXLXPPPL 795
K PPPPP PPP PP K PPP+
Sbjct: 64 KATPPPPPPPPPLISILQQAPPPPPPPPPPTL-KAPPPPPI 103
>Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical
protein T24B8.4 protein.
Length = 866
Score = 28.7 bits (61), Expect = 5.5
Identities = 14/37 (37%), Positives = 14/37 (37%)
Frame = +1
Query: 682 PPPPPXXXXXKKXXXXXKXXXPPPXPPXFSKXLXPPP 792
PPPPP PPP PP F PPP
Sbjct: 84 PPPPPMFAGGIPPPPPMMGGIPPP-PPMFGAPPPPPP 119
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 28.3 bits (60), Expect = 7.3
Identities = 13/37 (35%), Positives = 13/37 (35%)
Frame = +1
Query: 682 PPPPPXXXXXKKXXXXXKXXXPPPXPPXFSKXLXPPP 792
PPPPP P P PP S PPP
Sbjct: 264 PPPPPSVTPMPPPMPPTPGMTPRPPPPPSSGMWPPPP 300
>U41543-12|AAZ91345.1| 401|Caenorhabditis elegans Groundhog
(hedgehog-like family)protein 7 protein.
Length = 401
Score = 28.3 bits (60), Expect = 7.3
Identities = 11/37 (29%), Positives = 15/37 (40%)
Frame = +1
Query: 682 PPPPPXXXXXKKXXXXXKXXXPPPXPPXFSKXLXPPP 792
PPPPP + + PPP P + + P P
Sbjct: 29 PPPPPKPAPYVEQSAQPQQTAPPPPPAPYPQQAVPAP 65
>U41543-6|AAB37023.1| 2018|Caenorhabditis elegans Hypothetical
protein F46H5.4 protein.
Length = 2018
Score = 28.3 bits (60), Expect = 7.3
Identities = 15/50 (30%), Positives = 28/50 (56%), Gaps = 4/50 (8%)
Frame = +2
Query: 293 YEDLLRQAQDSTTDDDLLRVSEEM--FNADIN-NAFNY-IQVNLQGQDHS 430
+ +RQ D T+D+D+ R+ EM N ++ FN+ +++ L G + S
Sbjct: 505 FSSFIRQEGDKTSDEDIYRICSEMRRTNGKVHKKMFNFELELTLAGSNKS 554
>U39852-7|AAK39260.1| 240|Caenorhabditis elegans Ground-like (grd
related) protein 6 protein.
Length = 240
Score = 28.3 bits (60), Expect = 7.3
Identities = 15/49 (30%), Positives = 17/49 (34%)
Frame = +1
Query: 655 PXXXPXKXFPPPPPXXXXXKKXXXXXKXXXPPPXPPXFSKXLXPPPLQK 801
P P PPPPP PPP PP PPP+ +
Sbjct: 46 PMPMPMPVCPPPPPCPAQF----CPPPPICPPPPPPPMPCPPPPPPMPR 90
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 28.3 bits (60), Expect = 7.3
Identities = 13/37 (35%), Positives = 13/37 (35%)
Frame = +1
Query: 682 PPPPPXXXXXKKXXXXXKXXXPPPXPPXFSKXLXPPP 792
PPPPP P P PP S PPP
Sbjct: 274 PPPPPSVTPMPPPMPPTPGMTPRPPPPPSSGMWPPPP 310
>Z34533-1|CAA84302.3| 730|Caenorhabditis elegans Hypothetical
protein B0285.1 protein.
Length = 730
Score = 27.9 bits (59), Expect = 9.7
Identities = 14/49 (28%), Positives = 17/49 (34%)
Frame = +2
Query: 548 TXVVTPXKKRXNPFFXLIXXGPSDPFXFSXXXXXXXPXXXPXXFSXPPP 694
T + P NPF + P P + P P FS PPP
Sbjct: 186 TAIPPPPSFNINPFQPMFSQPPPPPLPPNSQFMTPPPRPPPAPFSIPPP 234
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,351,462
Number of Sequences: 27780
Number of extensions: 350882
Number of successful extensions: 1087
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 854
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1011
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2118983636
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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