Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP01_F_M06
(942 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g23860.2 68414.m03010 splicing factor RSZp21 (RSZP21) / 9G8-l... 66 4e-11
At1g23860.1 68414.m03009 splicing factor RSZp21 (RSZP21) / 9G8-l... 66 4e-11
At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-l... 65 6e-11
At2g24590.1 68415.m02936 splicing factor, putative similar to to... 64 1e-10
At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR... 59 5e-09
At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR... 59 5e-09
At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR... 59 5e-09
At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR... 58 8e-09
At4g02430.1 68417.m00329 pre-mRNA splicing factor, putative / SR... 58 8e-09
At1g09140.1 68414.m01018 SF2/ASF-like splicing modulator (SRP30)... 57 1e-08
At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative stro... 54 1e-07
At3g53500.2 68416.m05907 zinc knuckle (CCHC-type) family protein... 52 6e-07
At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly id... 52 6e-07
At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putat... 49 4e-06
At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putat... 49 4e-06
At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putativ... 49 4e-06
At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putativ... 49 5e-06
At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putativ... 48 7e-06
At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing ... 47 2e-05
At1g51510.1 68414.m05797 RNA-binding protein, putative similar t... 47 2e-05
At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3) 47 2e-05
At2g43410.1 68415.m05395 RNA recognition motif (RRM)-containing ... 46 3e-05
At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)... 46 4e-05
At3g19130.1 68416.m02429 RNA-binding protein, putative similar t... 46 5e-05
At3g26420.1 68416.m03295 glycine-rich RNA-binding protein simila... 44 1e-04
At4g18120.1 68417.m02694 RNA recognition motif (RRM)-containing ... 44 1e-04
At3g61860.1 68416.m06947 arginine/serine-rich splicing factor RS... 44 2e-04
At5g52040.2 68418.m06459 arginine/serine-rich splicing factor RS... 43 3e-04
At5g52040.1 68418.m06458 arginine/serine-rich splicing factor RS... 43 3e-04
At4g35785.2 68417.m05083 transformer serine/arginine-rich ribonu... 43 3e-04
At4g35785.1 68417.m05082 transformer serine/arginine-rich ribonu... 43 3e-04
At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /... 43 3e-04
At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /... 43 3e-04
At5g19960.1 68418.m02376 RNA recognition motif (RRM)-containing ... 43 3e-04
At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing ... 43 3e-04
At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast, ... 43 3e-04
At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing ... 43 3e-04
At2g23350.1 68415.m02788 polyadenylate-binding protein, putative... 42 4e-04
At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP... 42 6e-04
At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP... 42 6e-04
At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP... 42 6e-04
At4g25500.2 68417.m03674 arginine/serine-rich splicing factor RS... 42 6e-04
At4g25500.1 68417.m03673 arginine/serine-rich splicing factor RS... 42 6e-04
At5g61030.1 68418.m07659 RNA-binding protein, putative similar t... 42 8e-04
At5g58130.1 68418.m07273 RNA recognition motif (RRM)-containing ... 42 8e-04
At5g04600.1 68418.m00460 RNA recognition motif (RRM)-containing ... 42 8e-04
At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putativ... 42 8e-04
At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing ... 41 0.001
At5g07290.1 68418.m00832 RNA recognition motif (RRM)-containing ... 41 0.001
At3g12640.1 68416.m01573 RNA recognition motif (RRM)-containing ... 41 0.001
At3g08000.1 68416.m00977 RNA-binding protein, putative similar t... 41 0.001
At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast, ... 41 0.001
At2g46610.1 68415.m05814 arginine/serine-rich splicing factor, p... 41 0.001
At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)... 41 0.001
At1g49760.1 68414.m05580 polyadenylate-binding protein, putative... 41 0.001
At1g34140.1 68414.m04235 polyadenylate-binding protein, putative... 41 0.001
At1g07350.2 68414.m00784 transformer serine/arginine-rich ribonu... 41 0.001
At1g07350.1 68414.m00783 transformer serine/arginine-rich ribonu... 41 0.001
At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL3... 40 0.002
At1g55310.1 68414.m06318 SC35-like splicing factor, 33 kD (SCL33... 40 0.002
At5g10350.2 68418.m01201 polyadenylate-binding protein family pr... 40 0.002
At5g10350.1 68418.m01200 polyadenylate-binding protein family pr... 40 0.002
At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast, ... 40 0.002
At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing ... 40 0.002
At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putativ... 40 0.002
At5g04280.1 68418.m00421 glycine-rich RNA-binding protein 40 0.003
At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putat... 40 0.003
At2g42890.2 68415.m05312 RNA recognition motif (RRM)-containing ... 39 0.006
At2g42890.1 68415.m05311 RNA recognition motif (RRM)-containing ... 39 0.006
At2g36660.1 68415.m04496 polyadenylate-binding protein, putative... 39 0.006
At2g46610.2 68415.m05813 arginine/serine-rich splicing factor, p... 38 0.007
At1g18630.1 68414.m02322 glycine-rich RNA-binding protein, putat... 38 0.010
At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP... 38 0.013
At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit... 38 0.013
At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit... 38 0.013
At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit... 38 0.013
At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putat... 38 0.013
At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putat... 38 0.013
At5g51120.1 68418.m06339 polyadenylate-binding protein, putative... 37 0.017
At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing ... 37 0.017
At3g16380.1 68416.m02074 polyadenylate-binding protein, putative... 37 0.017
At1g29400.2 68414.m03597 RNA recognition motif (RRM)-containing ... 37 0.017
At1g29400.1 68414.m03596 RNA recognition motif (RRM)-containing ... 37 0.017
At1g20880.1 68414.m02615 RNA recognition motif (RRM)-containing ... 37 0.017
At1g03457.2 68414.m00327 RNA-binding protein, putative similar t... 37 0.017
At1g03457.1 68414.m00326 RNA-binding protein, putative similar t... 37 0.017
At5g53680.1 68418.m06668 RNA recognition motif (RRM)-containing ... 37 0.022
At5g06210.1 68418.m00693 RNA-binding protein, putative contains ... 37 0.022
At3g55460.1 68416.m06159 SC35-like splicing factor, 30 kD (SCL30... 37 0.022
At5g65260.1 68418.m08209 polyadenylate-binding protein family pr... 36 0.029
At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing ... 36 0.029
At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing ... 36 0.039
At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing ... 36 0.039
At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing ... 36 0.039
At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast, ... 36 0.039
At2g16260.1 68415.m01862 glycine-rich RNA-binding protein, putat... 36 0.039
At1g13690.1 68414.m01609 RNA recognition motif (RRM)-containing ... 36 0.039
At5g44200.1 68418.m05408 nuclear cap-binding protein, putative s... 36 0.051
At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative 36 0.051
At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)... 36 0.051
At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)... 36 0.051
At1g76460.1 68414.m08893 RNA recognition motif (RRM)-containing ... 36 0.051
At3g11400.1 68416.m01390 eukaryotic translation initiation facto... 35 0.068
At1g74230.1 68414.m08597 glycine-rich RNA-binding protein simila... 35 0.068
At5g59860.1 68418.m07506 RNA recognition motif (RRM)-containing ... 35 0.090
At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing ... 35 0.090
At4g03110.2 68417.m00421 RNA-binding protein, putative similar t... 35 0.090
At4g03110.1 68417.m00420 RNA-binding protein, putative similar t... 35 0.090
At2g27330.1 68415.m03286 RNA recognition motif (RRM)-containing ... 35 0.090
At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit... 35 0.090
At5g02530.1 68418.m00187 RNA and export factor-binding protein, ... 34 0.12
At5g61960.1 68418.m07777 RNA recognition motif (RRM)-containing ... 34 0.16
At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing ... 34 0.16
At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast, ... 34 0.16
At2g35410.1 68415.m04340 33 kDa ribonucleoprotein, chloroplast, ... 33 0.21
At5g59950.3 68418.m07518 RNA and export factor-binding protein, ... 33 0.27
At5g59950.2 68418.m07519 RNA and export factor-binding protein, ... 33 0.27
At5g59950.1 68418.m07517 RNA and export factor-binding protein, ... 33 0.27
At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein... 33 0.27
At4g13850.2 68417.m02146 glycine-rich RNA-binding protein (GRP2)... 33 0.27
At4g13850.1 68417.m02145 glycine-rich RNA-binding protein (GRP2)... 33 0.27
At1g07360.1 68414.m00785 zinc finger (CCCH-type) family protein ... 33 0.27
At4g09040.1 68417.m01491 RNA recognition motif (RRM)-containing ... 33 0.36
At3g50670.1 68416.m05542 U1 small nuclear ribonucleoprotein 70 (... 33 0.36
At3g23900.1 68416.m03003 RNA recognition motif (RRM)-containing ... 33 0.36
At2g47310.1 68415.m05906 flowering time control protein-related ... 33 0.36
At5g37720.1 68418.m04541 RNA and export factor-binding protein, ... 32 0.48
At5g16260.1 68418.m01899 RNA recognition motif (RRM)-containing ... 32 0.48
At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing ... 32 0.48
At3g54770.1 68416.m06060 RNA recognition motif (RRM)-containing ... 32 0.48
At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing ... 32 0.48
At1g66260.1 68414.m07522 RNA and export factor-binding protein, ... 32 0.48
At5g53720.1 68418.m06676 RNA recognition motif (RRM)-containing ... 32 0.63
At5g12190.1 68418.m01430 RNA recognition motif (RRM)-containing ... 32 0.63
At2g29580.1 68415.m03592 zinc finger (CCCH-type) family protein ... 32 0.63
At1g58470.1 68414.m06651 RNA-binding protein (XF41) identical to... 32 0.63
At1g16610.2 68414.m01990 arginine/serine-rich protein, putative ... 31 0.84
At1g16610.1 68414.m01989 arginine/serine-rich protein, putative ... 31 0.84
At5g43960.2 68418.m05378 nuclear transport factor 2 (NTF2) famil... 31 1.1
At5g43960.1 68418.m05379 nuclear transport factor 2 (NTF2) famil... 31 1.1
At3g49390.1 68416.m05399 RNA-binding protein, putative RNA-bindi... 31 1.5
At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein... 31 1.5
At1g06960.2 68414.m00741 small nuclear ribonucleoprotein U2B, pu... 31 1.5
At1g06960.1 68414.m00740 small nuclear ribonucleoprotein U2B, pu... 31 1.5
At1g01080.1 68414.m00010 33 kDa ribonucleoprotein, chloroplast, ... 31 1.5
At5g06000.1 68418.m00665 eukaryotic translation initiation facto... 30 1.9
At4g32720.1 68417.m04657 RNA recognition motif (RRM)-containing ... 30 1.9
At3g20930.1 68416.m02645 RNA recognition motif (RRM)-containing ... 30 1.9
At3g14100.1 68416.m01782 oligouridylate-binding protein, putativ... 30 1.9
At1g09230.1 68414.m01030 RNA recognition motif (RRM)-containing ... 30 1.9
At5g03580.1 68418.m00316 polyadenylate-binding protein, putative... 30 2.6
At3g61130.1 68416.m06841 glycosyl transferase family 8 protein c... 30 2.6
At2g30260.1 68415.m03684 small nuclear ribonucleoprotein U2B, pu... 30 2.6
At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative simi... 30 2.6
At1g22330.1 68414.m02793 RNA recognition motif (RRM)-containing ... 30 2.6
At3g14450.1 68416.m01831 RNA-binding protein, putative contains ... 29 3.4
At1g54080.2 68414.m06163 oligouridylate-binding protein, putativ... 29 3.4
At1g54080.1 68414.m06162 oligouridylate-binding protein, putativ... 29 3.4
At5g46840.1 68418.m05771 RNA recognition motif (RRM)-containing ... 29 4.5
At3g53500.1 68416.m05906 zinc knuckle (CCHC-type) family protein... 29 4.5
At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing ... 29 4.5
At2g37340.3 68415.m04580 splicing factor RSZ33 (RSZ33) nearly id... 29 4.5
At5g54580.1 68418.m06794 RNA recognition motif (RRM)-containing ... 29 5.9
At5g03480.1 68418.m00304 expressed protein ; expression support... 29 5.9
At3g27700.2 68416.m03459 RNA recognition motif (RRM)-containing ... 29 5.9
At3g27700.1 68416.m03458 RNA recognition motif (RRM)-containing ... 29 5.9
At3g26120.1 68416.m03257 RNA-binding protein, putative similar t... 29 5.9
At1g43190.1 68414.m04977 polypyrimidine tract-binding protein, p... 29 5.9
At5g27640.1 68418.m03311 eukaryotic translation initiation facto... 28 7.8
At3g46020.1 68416.m04979 RNA-binding protein, putative similar t... 28 7.8
At2g33440.1 68415.m04099 splicing factor family protein similar ... 28 7.8
At1g79880.3 68414.m09332 La domain-containing protein contains P... 28 7.8
At1g79880.2 68414.m09331 La domain-containing protein contains P... 28 7.8
At1g79880.1 68414.m09333 La domain-containing protein contains P... 28 7.8
At1g53650.1 68414.m06105 RNA-binding protein, putative similar t... 28 7.8
At1g10320.1 68414.m01162 U2 snRNP auxiliary factor-related simil... 28 7.8
At1g05510.1 68414.m00563 expressed protein 28 7.8
>At1g23860.2 68414.m03010 splicing factor RSZp21 (RSZP21) / 9G8-like
SR protein (SRZ21) nearly identical to 9G8-like splicing
factor SRZ21 [Arabidopsis thaliana] GI:3435096, RSZp21
protein [Arabidopsis thaliana] GI:2582643
Length = 187
Score = 65.7 bits (153), Expect = 4e-11
Identities = 29/58 (50%), Positives = 42/58 (72%)
Frame = +3
Query: 219 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMN 392
TRVYVG L + + +LE EF +G L +VWVA PPG+AF+EF++ ++A DA SA++
Sbjct: 2 TRVYVGNLDPRVTERELEDEFKAFGVLRNVWVARRPPGYAFLEFDDERDALDAISALD 59
>At1g23860.1 68414.m03009 splicing factor RSZp21 (RSZP21) / 9G8-like
SR protein (SRZ21) nearly identical to 9G8-like splicing
factor SRZ21 [Arabidopsis thaliana] GI:3435096, RSZp21
protein [Arabidopsis thaliana] GI:2582643
Length = 187
Score = 65.7 bits (153), Expect = 4e-11
Identities = 29/58 (50%), Positives = 42/58 (72%)
Frame = +3
Query: 219 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMN 392
TRVYVG L + + +LE EF +G L +VWVA PPG+AF+EF++ ++A DA SA++
Sbjct: 2 TRVYVGNLDPRVTERELEDEFKAFGVLRNVWVARRPPGYAFLEFDDERDALDAISALD 59
>At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-like
SR protein (SRZ22) identical to RSZp22 protein
[Arabidopsis thaliana] gi|2582645|emb|CAA05352, 9G8-like
SR protein [Arabidopsis thaliana] GI:3435094; contains
Pfam profiles PF00076: RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain) and PF00098: Zinc knuckle;
identical to cDNA 9G8-like SR protein (SRZ22) GI:3435093
Length = 200
Score = 65.3 bits (152), Expect = 6e-11
Identities = 28/59 (47%), Positives = 42/59 (71%)
Frame = +3
Query: 219 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNG 395
+RVYVG L + + +LE EF +G + SVWVA PPG+AF++FE+ ++A DA A++G
Sbjct: 2 SRVYVGNLDPRVTERELEDEFRAFGVVRSVWVARRPPGYAFLDFEDPRDARDAIRALDG 60
>At2g24590.1 68415.m02936 splicing factor, putative similar to to
RSZp22 protein [Arabidopsis thaliana]
gi|2582645|emb|CAA05352
Length = 196
Score = 64.1 bits (149), Expect = 1e-10
Identities = 27/59 (45%), Positives = 41/59 (69%)
Frame = +3
Query: 219 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNG 395
+RVYVG L + + +LE EF +G + SVWVA PPG+AF++FE+ ++A DA ++G
Sbjct: 2 SRVYVGNLDPRVTERELEDEFRSFGVIRSVWVARRPPGYAFLDFEDSRDARDAIREVDG 60
>At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 58.8 bits (136), Expect = 5e-09
Identities = 31/80 (38%), Positives = 51/80 (63%), Gaps = 3/80 (3%)
Frame = +3
Query: 204 MSSGGTR-VYVGGLVEGIKKEDLEREFDKYGKLNSVWVAL--NPPGFAFIEFENLQEAED 374
MSS +R VYVG L I++ ++E F KYG + + + + PPG+AF+EF++ ++AED
Sbjct: 1 MSSRSSRTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAED 60
Query: 375 ACSAMNGTEMLGATLKVEIS 434
A +G + G L+VE++
Sbjct: 61 AIHGRDGYDFDGHRLRVELA 80
>At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 285
Score = 58.8 bits (136), Expect = 5e-09
Identities = 31/80 (38%), Positives = 51/80 (63%), Gaps = 3/80 (3%)
Frame = +3
Query: 204 MSSGGTR-VYVGGLVEGIKKEDLEREFDKYGKLNSVWVAL--NPPGFAFIEFENLQEAED 374
MSS +R VYVG L I++ ++E F KYG + + + + PPG+AF+EF++ ++AED
Sbjct: 1 MSSRSSRTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAED 60
Query: 375 ACSAMNGTEMLGATLKVEIS 434
A +G + G L+VE++
Sbjct: 61 AIHGRDGYDFDGHRLRVELA 80
>At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 58.8 bits (136), Expect = 5e-09
Identities = 31/80 (38%), Positives = 51/80 (63%), Gaps = 3/80 (3%)
Frame = +3
Query: 204 MSSGGTR-VYVGGLVEGIKKEDLEREFDKYGKLNSVWVAL--NPPGFAFIEFENLQEAED 374
MSS +R VYVG L I++ ++E F KYG + + + + PPG+AF+EF++ ++AED
Sbjct: 1 MSSRSSRTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAED 60
Query: 375 ACSAMNGTEMLGATLKVEIS 434
A +G + G L+VE++
Sbjct: 61 AIHGRDGYDFDGHRLRVELA 80
>At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR1
protein, putative strong similarity to SP|O22315
Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis
thaliana}; cDNA NCBI_gi:15810292 supports a truncated
version while protein evidence supports a longer model.
Length = 278
Score = 58.0 bits (134), Expect = 8e-09
Identities = 30/80 (37%), Positives = 51/80 (63%), Gaps = 3/80 (3%)
Frame = +3
Query: 204 MSSGGTR-VYVGGLVEGIKKEDLEREFDKYGKLNSVWVAL--NPPGFAFIEFENLQEAED 374
MSS +R +YVG L I++ ++E F KYG + + + + PPG+AF+EFE+ ++A+D
Sbjct: 1 MSSRSSRTIYVGNLPGDIREREVEDLFSKYGPVVQIDLKIPPRPPGYAFVEFEDARDADD 60
Query: 375 ACSAMNGTEMLGATLKVEIS 434
A +G + G L+VE++
Sbjct: 61 AIYGRDGYDFDGHHLRVELA 80
>At4g02430.1 68417.m00329 pre-mRNA splicing factor, putative / SR1
protein, putative strong similarity to SP|O22315
Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis
thaliana}; cDNA NCBI_gi:15810292 supports a truncated
version while protein evidence supports a longer model.
Length = 178
Score = 58.0 bits (134), Expect = 8e-09
Identities = 30/80 (37%), Positives = 51/80 (63%), Gaps = 3/80 (3%)
Frame = +3
Query: 204 MSSGGTR-VYVGGLVEGIKKEDLEREFDKYGKLNSVWVAL--NPPGFAFIEFENLQEAED 374
MSS +R +YVG L I++ ++E F KYG + + + + PPG+AF+EFE+ ++A+D
Sbjct: 1 MSSRSSRTIYVGNLPGDIREREVEDLFSKYGPVVQIDLKIPPRPPGYAFVEFEDARDADD 60
Query: 375 ACSAMNGTEMLGATLKVEIS 434
A +G + G L+VE++
Sbjct: 61 AIYGRDGYDFDGHHLRVELA 80
>At1g09140.1 68414.m01018 SF2/ASF-like splicing modulator (SRP30)
nearly identical to SF2/ASF-like splicing modulator
Srp30 [Arabidopsis thaliana] GI:4775270
Length = 268
Score = 57.2 bits (132), Expect = 1e-08
Identities = 32/80 (40%), Positives = 50/80 (62%), Gaps = 3/80 (3%)
Frame = +3
Query: 204 MSSGGTR-VYVGGLVEGIKKEDLEREFDKYGKLNSVWVAL--NPPGFAFIEFENLQEAED 374
MSS R +YVG L I+K ++E F KYG + + + + PPG+AF+EFE+ ++A+D
Sbjct: 1 MSSRWNRTIYVGNLPGDIRKCEVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDPRDADD 60
Query: 375 ACSAMNGTEMLGATLKVEIS 434
A +G + G L+VEI+
Sbjct: 61 AIYGRDGYDFDGCRLRVEIA 80
>At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative strong
similarity to SP|O22315 Pre-mRNA splicing factor SF2
(SR1 protein) {Arabidopsis thaliana}
Length = 300
Score = 54.0 bits (124), Expect = 1e-07
Identities = 25/72 (34%), Positives = 45/72 (62%), Gaps = 2/72 (2%)
Frame = +3
Query: 225 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVAL--NPPGFAFIEFENLQEAEDACSAMNGT 398
+YVG L I++ ++E F KYG++ + + + PP + F+EFE+ ++AEDA +G
Sbjct: 9 IYVGNLPGDIREHEIEDIFYKYGRIVDIELKVPPRPPCYCFVEFEHSRDAEDAIKGRDGY 68
Query: 399 EMLGATLKVEIS 434
+ G L+VE++
Sbjct: 69 NLDGCRLRVELA 80
>At3g53500.2 68416.m05907 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 284
Score = 52.0 bits (119), Expect = 6e-07
Identities = 27/74 (36%), Positives = 45/74 (60%)
Frame = +3
Query: 213 GGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMN 392
G TR+YVG L + DLER F +YG++ V + + +AF+EF + ++A+DA ++
Sbjct: 9 GNTRLYVGRLSSRTRTRDLERLFSRYGRVRDVDMKRD---YAFVEFSDPRDADDARYYLD 65
Query: 393 GTEMLGATLKVEIS 434
G + G+ + VE S
Sbjct: 66 GRDFDGSRITVEAS 79
>At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly
identical to splicing factor RSZ33 [Arabidopsis
thaliana] GI:9843663; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00098: Zinc knuckle
Length = 290
Score = 52.0 bits (119), Expect = 6e-07
Identities = 27/74 (36%), Positives = 45/74 (60%)
Frame = +3
Query: 213 GGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMN 392
G TR+YVG L + DLER F +YG++ V + + +AF+EF + ++A+DA ++
Sbjct: 9 GNTRLYVGRLSSRTRTRDLERLFSRYGRVRDVDMKRD---YAFVEFGDPRDADDARHYLD 65
Query: 393 GTEMLGATLKVEIS 434
G + G+ + VE S
Sbjct: 66 GRDFDGSRITVEFS 79
>At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 49.2 bits (112), Expect = 4e-06
Identities = 25/74 (33%), Positives = 40/74 (54%), Gaps = 5/74 (6%)
Frame = +3
Query: 219 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVAL-----NPPGFAFIEFENLQEAEDACS 383
+R++VGGL + + LE FD+YGK+ + + P GF FI F + + A+DA
Sbjct: 12 SRIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAIK 71
Query: 384 AMNGTEMLGATLKV 425
M+G E+ + V
Sbjct: 72 HMHGRELGNKVISV 85
>At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 49.2 bits (112), Expect = 4e-06
Identities = 25/74 (33%), Positives = 40/74 (54%), Gaps = 5/74 (6%)
Frame = +3
Query: 219 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVAL-----NPPGFAFIEFENLQEAEDACS 383
+R++VGGL + + LE FD+YGK+ + + P GF FI F + + A+DA
Sbjct: 12 SRIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAIK 71
Query: 384 AMNGTEMLGATLKV 425
M+G E+ + V
Sbjct: 72 HMHGRELGNKVISV 85
>At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 432
Score = 49.2 bits (112), Expect = 4e-06
Identities = 23/69 (33%), Positives = 43/69 (62%)
Frame = +3
Query: 219 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGT 398
T ++VGGL + EDL++ F+++G++ SV + + G F++F N AE+A +NGT
Sbjct: 304 TTIFVGGLDSSVTDEDLKQPFNEFGEIVSVKIPVG-KGCGFVQFVNRPNAEEALEKLNGT 362
Query: 399 EMLGATLKV 425
+ T+++
Sbjct: 363 VIGKQTVRL 371
>At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 434
Score = 48.8 bits (111), Expect = 5e-06
Identities = 23/69 (33%), Positives = 42/69 (60%)
Frame = +3
Query: 219 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGT 398
T ++VGGL + EDL++ F ++G++ SV + + G F++F N AE+A +NGT
Sbjct: 306 TTIFVGGLDSSVTDEDLKQPFSEFGEIVSVKIPVG-KGCGFVQFVNRPNAEEALEKLNGT 364
Query: 399 EMLGATLKV 425
+ T+++
Sbjct: 365 VIGKQTVRL 373
>At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein ACBF GB:U90212 GI:1899187
from [Nicotiana tabacum]
Length = 445
Score = 48.4 bits (110), Expect = 7e-06
Identities = 23/63 (36%), Positives = 38/63 (60%)
Frame = +3
Query: 210 SGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAM 389
S + ++VGGL + +EDL + F +G++ SV + + G F++F N Q AE+A +
Sbjct: 324 SNNSTIFVGGLDADVTEEDLMQPFSDFGEVVSVKIPVG-KGCGFVQFANRQSAEEAIGNL 382
Query: 390 NGT 398
NGT
Sbjct: 383 NGT 385
>At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing
protein
Length = 561
Score = 47.2 bits (107), Expect = 2e-05
Identities = 22/51 (43%), Positives = 31/51 (60%)
Frame = +3
Query: 258 KEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTEMLG 410
KED++ E K+GKLN ++V N GF ++ FEN Q A A A++G G
Sbjct: 488 KEDVKEECSKFGKLNHIFVDKNSVGFVYLRFENAQAAIGAQRALHGRWFAG 538
Score = 46.4 bits (105), Expect = 3e-05
Identities = 24/77 (31%), Positives = 41/77 (53%), Gaps = 4/77 (5%)
Frame = +3
Query: 207 SSGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNP----PGFAFIEFENLQEAED 374
S G R+YVG L + ++DL + F+ +G + V V + GF F++F L++A +
Sbjct: 281 SGGARRLYVGNLHINMSEDDLRKVFESFGSVELVQVPRDETGLCKGFGFVQFARLEDARN 340
Query: 375 ACSAMNGTEMLGATLKV 425
A + E+ G +KV
Sbjct: 341 ALNLNGQLEIAGRAIKV 357
>At1g51510.1 68414.m05797 RNA-binding protein, putative similar to
RNA-binding protein 8 (Ribonucleoprotein RBM8) SP:Q9Y5S9
from [Homo sapiens], RNA-binding protein Y14 [Xenopus
laevis] GI:11034807; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 202
Score = 46.8 bits (106), Expect = 2e-05
Identities = 25/76 (32%), Positives = 44/76 (57%), Gaps = 5/76 (6%)
Frame = +3
Query: 216 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNP-----PGFAFIEFENLQEAEDAC 380
G + V G+ E ++ED+ F +G++ ++ + L+ G+A IE+E +EA+ A
Sbjct: 94 GWIILVSGVHEETQEEDITNAFGDFGEIKNLNLNLDRRSGYVKGYALIEYEKKEEAQSAI 153
Query: 381 SAMNGTEMLGATLKVE 428
SAMNG E+L + V+
Sbjct: 154 SAMNGAELLTQNVSVD 169
>At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3)
Length = 660
Score = 46.8 bits (106), Expect = 2e-05
Identities = 27/71 (38%), Positives = 39/71 (54%), Gaps = 4/71 (5%)
Frame = +3
Query: 210 SGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPP----GFAFIEFENLQEAEDA 377
S G +Y+ L + + E L+ F +YG + S V LNP GF F+ + N +EA A
Sbjct: 329 SQGANLYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNPQGMSRGFGFVAYSNPEEALRA 388
Query: 378 CSAMNGTEMLG 410
S MNG +M+G
Sbjct: 389 LSEMNG-KMIG 398
Score = 39.1 bits (87), Expect = 0.004
Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 4/66 (6%)
Frame = +3
Query: 219 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPG----FAFIEFENLQEAEDACSA 386
T VYV L + I +++L + F K+G ++S V + G F F+ FE + A A
Sbjct: 229 TNVYVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQSGNSRCFGFVNFECTEAAASAVEK 288
Query: 387 MNGTEM 404
MNG +
Sbjct: 289 MNGISL 294
Score = 33.5 bits (73), Expect = 0.21
Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 4/72 (5%)
Frame = +3
Query: 201 TMSSGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN----PPGFAFIEFENLQEA 368
T SG +++ L I + L F +G + S VA++ G+ F++FE + A
Sbjct: 130 TRLSGKGNIFIKNLDASIDNKALFETFSSFGTILSCKVAMDVTGRSKGYGFVQFEKEESA 189
Query: 369 EDACSAMNGTEM 404
+ A +NG M
Sbjct: 190 QAAIDKLNGMLM 201
>At2g43410.1 68415.m05395 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 1056
Score = 46.4 bits (105), Expect = 3e-05
Identities = 25/68 (36%), Positives = 41/68 (60%)
Frame = +3
Query: 225 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTEM 404
++VGG+ + K+DLE EF K+GK+ + L AFI++ + +A A +MNG M
Sbjct: 252 LWVGGIGPNVSKDDLEEEFSKFGKIED-FRFLRERKTAFIDYYEMDDALQA-KSMNGKPM 309
Query: 405 LGATLKVE 428
G+ L+V+
Sbjct: 310 GGSFLRVD 317
Score = 38.3 bits (85), Expect = 0.007
Identities = 20/62 (32%), Positives = 34/62 (54%)
Frame = +3
Query: 225 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTEM 404
++VG L + DL F +YG ++ + V + GFAFI + +++EA A A+ G +
Sbjct: 20 LWVGSLTPETTESDLTELFGRYGDIDRITV-YSSRGFAFIYYRHVEEAVAAKEALQGANL 78
Query: 405 LG 410
G
Sbjct: 79 NG 80
>At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)
non-consensus TA donor splice site at exon 2,
polyadenylate-binding protein - Triticum aestivum
(common wheat),PIR:T06979
Length = 443
Score = 46.0 bits (104), Expect = 4e-05
Identities = 24/63 (38%), Positives = 33/63 (52%), Gaps = 4/63 (6%)
Frame = +3
Query: 219 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN----PPGFAFIEFENLQEAEDACSA 386
T VYV L E +DL+ F +YGK+ S V + GF F+ FEN +A A +
Sbjct: 29 TNVYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGEGKSKGFGFVNFENADDAARAVES 88
Query: 387 MNG 395
+NG
Sbjct: 89 LNG 91
>At3g19130.1 68416.m02429 RNA-binding protein, putative similar to
RNA Binding Protein 47 [Nicotiana plumbaginifolia]
GI:9663769, DNA binding protein ACBF GB:AAC49850 from
[Nicotiana tabacum]; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 435
Score = 45.6 bits (103), Expect = 5e-05
Identities = 21/63 (33%), Positives = 38/63 (60%)
Frame = +3
Query: 210 SGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAM 389
S ++VGG+ + EDL + F ++G++ SV + + G F++F + + AEDA ++
Sbjct: 318 STNATIFVGGIDPDVIDEDLRQPFSQFGEVVSVKIPVGK-GCGFVQFADRKSAEDAIESL 376
Query: 390 NGT 398
NGT
Sbjct: 377 NGT 379
>At3g26420.1 68416.m03295 glycine-rich RNA-binding protein similar
to RNA-binding protein (RZ-1) GB:BAA12064 [Nicotiana
sylvestris]; contains Pfam profile: PF00076 RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 245
Score = 44.4 bits (100), Expect = 1e-04
Identities = 25/74 (33%), Positives = 38/74 (51%), Gaps = 5/74 (6%)
Frame = +3
Query: 222 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNP-----PGFAFIEFENLQEAEDACSA 386
R ++GGL L F+KYG L V L+ GF FI F+ + ++A +A
Sbjct: 8 RCFIGGLAWTTSDRGLRDAFEKYGHLVEAKVVLDKFSGRSRGFGFITFDEKKAMDEAIAA 67
Query: 387 MNGTEMLGATLKVE 428
MNG ++ G T+ V+
Sbjct: 68 MNGMDLDGRTITVD 81
>At4g18120.1 68417.m02694 RNA recognition motif (RRM)-containing
protein Mei2-like protein, Arabidopsis thaliana,
gb:D86122
Length = 785
Score = 44.0 bits (99), Expect = 1e-04
Identities = 25/73 (34%), Positives = 38/73 (52%)
Frame = +3
Query: 216 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNG 395
GT V V L + DLE F YG++ + N F+EF +++ A+ A A+N
Sbjct: 222 GTLV-VFNLAPSVSNRDLENIFGVYGEIKEIRETPNKRHHKFVEFFDVRSADAALKALNR 280
Query: 396 TEMLGATLKVEIS 434
TE+ G +K+E S
Sbjct: 281 TEIAGKRIKLEHS 293
>At3g61860.1 68416.m06947 arginine/serine-rich splicing factor RSP31
(RSP31) identical to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 264
Score = 43.6 bits (98), Expect = 2e-04
Identities = 22/51 (43%), Positives = 34/51 (66%)
Frame = +3
Query: 225 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDA 377
V+VG ++ DLER FDKYG+++ V + G+AF+ FE+ ++AEDA
Sbjct: 4 VFVGNFEYETRQSDLERLFDKYGRVDRVDM---KSGYAFVYFEDERDAEDA 51
Score = 41.1 bits (92), Expect = 0.001
Identities = 19/58 (32%), Positives = 35/58 (60%)
Frame = +3
Query: 255 KKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTEMLGATLKVE 428
K+ D+E+ F+ YGK+ +V + N F+F++FE ++A A A +++L + VE
Sbjct: 106 KEHDIEKHFEPYGKVTNVRIRRN---FSFVQFETQEDATKALEATQRSKILDRVVSVE 160
>At5g52040.2 68418.m06459 arginine/serine-rich splicing factor RSP41
(RSP41) nearly identical to SP|P92966
Arginine/serine-rich splicing factor RSP41 {Arabidopsis
thaliana}
Length = 357
Score = 43.2 bits (97), Expect = 3e-04
Identities = 21/61 (34%), Positives = 36/61 (59%)
Frame = +3
Query: 246 EGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTEMLGATLKV 425
+ + DLER F+ YGK+ +V + N FAFI++E ++A A A N ++++ + V
Sbjct: 106 QNTRTRDLERHFEPYGKIVNVRIRRN---FAFIQYEAQEDATRALDATNSSKLMDKVISV 162
Query: 426 E 428
E
Sbjct: 163 E 163
Score = 42.3 bits (95), Expect = 4e-04
Identities = 27/70 (38%), Positives = 39/70 (55%), Gaps = 2/70 (2%)
Frame = +3
Query: 225 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTE- 401
V+ G ++ DLER F KYGK+ V + GFAF+ E+ ++AEDA A++ E
Sbjct: 4 VFCGNFEYDARESDLERLFRKYGKVERVDM---KAGFAFVYMEDERDAEDAIRALDRFEY 60
Query: 402 -MLGATLKVE 428
G L+VE
Sbjct: 61 GRTGRRLRVE 70
>At5g52040.1 68418.m06458 arginine/serine-rich splicing factor RSP41
(RSP41) nearly identical to SP|P92966
Arginine/serine-rich splicing factor RSP41 {Arabidopsis
thaliana}
Length = 356
Score = 43.2 bits (97), Expect = 3e-04
Identities = 21/61 (34%), Positives = 36/61 (59%)
Frame = +3
Query: 246 EGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTEMLGATLKV 425
+ + DLER F+ YGK+ +V + N FAFI++E ++A A A N ++++ + V
Sbjct: 106 QNTRTRDLERHFEPYGKIVNVRIRRN---FAFIQYEAQEDATRALDATNSSKLMDKVISV 162
Query: 426 E 428
E
Sbjct: 163 E 163
Score = 42.3 bits (95), Expect = 4e-04
Identities = 27/70 (38%), Positives = 39/70 (55%), Gaps = 2/70 (2%)
Frame = +3
Query: 225 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTE- 401
V+ G ++ DLER F KYGK+ V + GFAF+ E+ ++AEDA A++ E
Sbjct: 4 VFCGNFEYDARESDLERLFRKYGKVERVDM---KAGFAFVYMEDERDAEDAIRALDRFEY 60
Query: 402 -MLGATLKVE 428
G L+VE
Sbjct: 61 GRTGRRLRVE 70
>At4g35785.2 68417.m05083 transformer serine/arginine-rich
ribonucleoprotein, putative similar to transformer-SR
ribonucleoprotein [Nicotiana tabacum]
gi|1781299|emb|CAA70700
Length = 141
Score = 43.2 bits (97), Expect = 3e-04
Identities = 24/70 (34%), Positives = 38/70 (54%), Gaps = 5/70 (7%)
Frame = +3
Query: 216 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNP-----PGFAFIEFENLQEAEDAC 380
GT +YV GL + +DLE F K GK+ S ++ + P GFAF+ +L++AE
Sbjct: 71 GTTLYVTGLSTRVTDKDLEAHFAKEGKVASCFLVMEPRTRVSRGFAFVTMSSLKDAERCI 130
Query: 381 SAMNGTEMLG 410
+N + + G
Sbjct: 131 KYLNQSVLEG 140
>At4g35785.1 68417.m05082 transformer serine/arginine-rich
ribonucleoprotein, putative similar to transformer-SR
ribonucleoprotein [Nicotiana tabacum]
gi|1781299|emb|CAA70700
Length = 140
Score = 43.2 bits (97), Expect = 3e-04
Identities = 24/70 (34%), Positives = 38/70 (54%), Gaps = 5/70 (7%)
Frame = +3
Query: 216 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNP-----PGFAFIEFENLQEAEDAC 380
GT +YV GL + +DLE F K GK+ S ++ + P GFAF+ +L++AE
Sbjct: 70 GTTLYVTGLSTRVTDKDLEAHFAKEGKVASCFLVMEPRTRVSRGFAFVTMSSLKDAERCI 129
Query: 381 SAMNGTEMLG 410
+N + + G
Sbjct: 130 KYLNQSVLEG 139
>At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 334
Score = 43.2 bits (97), Expect = 3e-04
Identities = 24/78 (30%), Positives = 40/78 (51%), Gaps = 5/78 (6%)
Frame = +3
Query: 207 SSGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAE 371
S G R+YVG L G+ LE F++ GK+ V + GF F+ + QE +
Sbjct: 245 SGSGNRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQ 304
Query: 372 DACSAMNGTEMLGATLKV 425
A +++NG ++ G ++V
Sbjct: 305 KAINSLNGADLDGRQIRV 322
Score = 30.7 bits (66), Expect = 1.5
Identities = 20/73 (27%), Positives = 30/73 (41%), Gaps = 5/73 (6%)
Frame = +3
Query: 222 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPP-----GFAFIEFENLQEAEDACSA 386
+++VG L + L + F+ G + V V + GF F+ E E A
Sbjct: 100 KLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQ 159
Query: 387 MNGTEMLGATLKV 425
NG E G L+V
Sbjct: 160 FNGYEFEGRPLRV 172
>At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 342
Score = 43.2 bits (97), Expect = 3e-04
Identities = 24/78 (30%), Positives = 40/78 (51%), Gaps = 5/78 (6%)
Frame = +3
Query: 207 SSGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAE 371
S G R+YVG L G+ LE F++ GK+ V + GF F+ + QE +
Sbjct: 253 SGSGNRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQ 312
Query: 372 DACSAMNGTEMLGATLKV 425
A +++NG ++ G ++V
Sbjct: 313 KAINSLNGADLDGRQIRV 330
Score = 30.7 bits (66), Expect = 1.5
Identities = 20/73 (27%), Positives = 30/73 (41%), Gaps = 5/73 (6%)
Frame = +3
Query: 222 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPP-----GFAFIEFENLQEAEDACSA 386
+++VG L + L + F+ G + V V + GF F+ E E A
Sbjct: 100 KLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQ 159
Query: 387 MNGTEMLGATLKV 425
NG E G L+V
Sbjct: 160 FNGYEFEGRPLRV 172
>At5g19960.1 68418.m02376 RNA recognition motif (RRM)-containing
protein low similarity to glycine-rich RNA-binding
protein [Euphorbia esula] GI:2645699; contains
INTERPRO:IPR000504 RNA-binding region RNP-1 (RNA
recognition motif) (RRM) domain
Length = 337
Score = 42.7 bits (96), Expect = 3e-04
Identities = 26/79 (32%), Positives = 42/79 (53%), Gaps = 4/79 (5%)
Frame = +3
Query: 201 TMSSGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWV----ALNPPGFAFIEFENLQEA 368
TM G + VYVGGL I +E + R F YG + +V + ++ + F+ F N + A
Sbjct: 2 TMDDGNS-VYVGGLPYDITEEAVRRVFSIYGSVLTVKIVNDRSVRGKCYGFVTFSNRRSA 60
Query: 369 EDACSAMNGTEMLGATLKV 425
+DA M+G + G ++V
Sbjct: 61 DDAIEDMDGKSIGGRAVRV 79
>At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing
protein similar to chloroplast RNA-binding protein cp33
[Arabidopsis thaliana] GI:681912; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM) domain
Length = 253
Score = 42.7 bits (96), Expect = 3e-04
Identities = 25/73 (34%), Positives = 40/73 (54%), Gaps = 5/73 (6%)
Frame = +3
Query: 222 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNP-----PGFAFIEFENLQEAEDACSA 386
+VYVG L + + KE LE F + GK+ S V+ P GF F+ F + ++ E A A
Sbjct: 178 KVYVGNLAKTVTKEMLENLFSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEAAIVA 237
Query: 387 MNGTEMLGATLKV 425
+N + + G ++V
Sbjct: 238 LNNSLLEGQKIRV 250
Score = 34.3 bits (75), Expect = 0.12
Identities = 19/81 (23%), Positives = 37/81 (45%), Gaps = 5/81 (6%)
Frame = +3
Query: 207 SSGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPG-----FAFIEFENLQEAE 371
S RVY+G + + E L + +++G + V V + F F +++++A
Sbjct: 72 SEAARRVYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGRSRRFGFATMKSVEDAN 131
Query: 372 DACSAMNGTEMLGATLKVEIS 434
+NG + G +KV I+
Sbjct: 132 AVVEKLNGNTVEGREIKVNIT 152
>At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative similar to
SP|Q43349 29 kDa ribonucleoprotein, chloroplast
precursor (RNA-binding protein cp29) {Arabidopsis
thaliana}
Length = 289
Score = 42.7 bits (96), Expect = 3e-04
Identities = 23/78 (29%), Positives = 41/78 (52%), Gaps = 5/78 (6%)
Frame = +3
Query: 207 SSGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAE 371
+ G RVYVG L G+ LE F + GK+ V + GF F+ +++ QE +
Sbjct: 200 AGSGNRVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQ 259
Query: 372 DACSAMNGTEMLGATLKV 425
+A +++G ++ G ++V
Sbjct: 260 NAIKSLDGADLDGRQIRV 277
Score = 33.5 bits (73), Expect = 0.21
Identities = 21/77 (27%), Positives = 34/77 (44%), Gaps = 5/77 (6%)
Frame = +3
Query: 210 SGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNP-----PGFAFIEFENLQEAED 374
S +++VG L + L + F+ G + V V + GF F+ ++ E E
Sbjct: 88 SADLKLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEA 147
Query: 375 ACSAMNGTEMLGATLKV 425
A NG E+ G L+V
Sbjct: 148 AAQQFNGYELDGRPLRV 164
>At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing
protein low similarity to SP|Q03251 Glycine-rich
RNA-binding protein 8 (CCR1 protein) {Arabidopsis
thaliana}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 181
Score = 42.7 bits (96), Expect = 3e-04
Identities = 30/80 (37%), Positives = 43/80 (53%), Gaps = 6/80 (7%)
Frame = +3
Query: 207 SSGG-TRVYVGGLVEGIKKEDLEREFDKYGKL---NSVW--VALNPPGFAFIEFENLQEA 368
SSG T++YV GL ++ L F+++G L N V VA P GFAF+ +E +EA
Sbjct: 72 SSGPKTKLYVSGLSFRTTEDTLRDTFEQFGNLIHMNMVMDKVANRPKGFAFLRYETEEEA 131
Query: 369 EDACSAMNGTEMLGATLKVE 428
A M+G + G + VE
Sbjct: 132 MKAIQGMHGKFLDGRVIFVE 151
>At2g23350.1 68415.m02788 polyadenylate-binding protein, putative /
PABP, putative
Length = 662
Score = 42.3 bits (95), Expect = 4e-04
Identities = 23/63 (36%), Positives = 34/63 (53%), Gaps = 4/63 (6%)
Frame = +3
Query: 219 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPG----FAFIEFENLQEAEDACSA 386
T VYV L E ++L+ F +YG ++S V + G F F+ FEN ++A A A
Sbjct: 225 TNVYVKNLSEATTDDELKTTFGQYGSISSAVVMRDGDGKSRCFGFVNFENPEDAARAVEA 284
Query: 387 MNG 395
+NG
Sbjct: 285 LNG 287
Score = 33.5 bits (73), Expect = 0.21
Identities = 22/77 (28%), Positives = 35/77 (45%), Gaps = 4/77 (5%)
Frame = +3
Query: 216 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFA----FIEFENLQEAEDACS 383
G +YV L + + E L F ++G + S V +P G + F+ F EA +
Sbjct: 327 GLNLYVKNLDDTVTDEKLRELFAEFGTITSCKVMRDPSGTSKGSGFVAFSAASEASRVLN 386
Query: 384 AMNGTEMLGATLKVEIS 434
MNG + G L V ++
Sbjct: 387 EMNGKMVGGKPLYVALA 403
>At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 92
Score = 41.9 bits (94), Expect = 6e-04
Identities = 26/79 (32%), Positives = 39/79 (49%), Gaps = 5/79 (6%)
Frame = +3
Query: 204 MSSGGTRVYVGGLVEGIKKEDLEREFDKYG-----KLNSVWVALNPPGFAFIEFENLQEA 368
MS R +VGGL EDL+R F ++G K+ + + GF F+ F++ +
Sbjct: 1 MSEVEYRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAM 60
Query: 369 EDACSAMNGTEMLGATLKV 425
DA MNG E+ G + V
Sbjct: 61 RDAIEEMNGKELDGRVITV 79
>At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 126
Score = 41.9 bits (94), Expect = 6e-04
Identities = 26/79 (32%), Positives = 39/79 (49%), Gaps = 5/79 (6%)
Frame = +3
Query: 204 MSSGGTRVYVGGLVEGIKKEDLEREFDKYG-----KLNSVWVALNPPGFAFIEFENLQEA 368
MS R +VGGL EDL+R F ++G K+ + + GF F+ F++ +
Sbjct: 1 MSEVEYRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAM 60
Query: 369 EDACSAMNGTEMLGATLKV 425
DA MNG E+ G + V
Sbjct: 61 RDAIEEMNGKELDGRVITV 79
>At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 169
Score = 41.9 bits (94), Expect = 6e-04
Identities = 26/79 (32%), Positives = 39/79 (49%), Gaps = 5/79 (6%)
Frame = +3
Query: 204 MSSGGTRVYVGGLVEGIKKEDLEREFDKYG-----KLNSVWVALNPPGFAFIEFENLQEA 368
MS R +VGGL EDL+R F ++G K+ + + GF F+ F++ +
Sbjct: 1 MSEVEYRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAM 60
Query: 369 EDACSAMNGTEMLGATLKV 425
DA MNG E+ G + V
Sbjct: 61 RDAIEEMNGKELDGRVITV 79
>At4g25500.2 68417.m03674 arginine/serine-rich splicing factor RSP40
(RSP40) identical to SP|P92965 Arginine/serine-rich
splicing factor RSP40 {Arabidopsis thaliana}
Length = 309
Score = 41.9 bits (94), Expect = 6e-04
Identities = 20/61 (32%), Positives = 36/61 (59%)
Frame = +3
Query: 246 EGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTEMLGATLKV 425
+ + DLE+ F+ YGK+ +V + N FAFI++E ++A A A N ++++ + V
Sbjct: 66 DNTRTRDLEKHFEPYGKIVNVRIRRN---FAFIQYEAQEDATRALDASNNSKLMDKVISV 122
Query: 426 E 428
E
Sbjct: 123 E 123
>At4g25500.1 68417.m03673 arginine/serine-rich splicing factor RSP40
(RSP40) identical to SP|P92965 Arginine/serine-rich
splicing factor RSP40 {Arabidopsis thaliana}
Length = 350
Score = 41.9 bits (94), Expect = 6e-04
Identities = 20/61 (32%), Positives = 36/61 (59%)
Frame = +3
Query: 246 EGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTEMLGATLKV 425
+ + DLE+ F+ YGK+ +V + N FAFI++E ++A A A N ++++ + V
Sbjct: 107 DNTRTRDLEKHFEPYGKIVNVRIRRN---FAFIQYEAQEDATRALDASNNSKLMDKVISV 163
Query: 426 E 428
E
Sbjct: 164 E 164
Score = 41.5 bits (93), Expect = 8e-04
Identities = 27/70 (38%), Positives = 39/70 (55%), Gaps = 2/70 (2%)
Frame = +3
Query: 225 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTEM 404
V+ G ++ DLER F KYGK+ V + GFAF+ E+ ++AEDA A++ E
Sbjct: 4 VFCGNFEYDAREGDLERLFRKYGKVERVDM---KAGFAFVYMEDERDAEDAIRALDRFEF 60
Query: 405 --LGATLKVE 428
G L+VE
Sbjct: 61 GRKGRRLRVE 70
>At5g61030.1 68418.m07659 RNA-binding protein, putative similar to
RNA-binding protein from [Solanum tuberosum]
GI:15822705, [Nicotiana tabacum] GI:15822703, [Nicotiana
sylvestris] GI:624925; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 309
Score = 41.5 bits (93), Expect = 8e-04
Identities = 20/74 (27%), Positives = 40/74 (54%), Gaps = 5/74 (6%)
Frame = +3
Query: 219 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACS 383
+++++GG+ + ++ L F KYG++ V L+ GF F+ F + + A A
Sbjct: 40 SKLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAIQ 99
Query: 384 AMNGTEMLGATLKV 425
A++G ++ G +KV
Sbjct: 100 ALDGRDLHGRVVKV 113
>At5g58130.1 68418.m07273 RNA recognition motif (RRM)-containing
protein
Length = 748
Score = 41.5 bits (93), Expect = 8e-04
Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 3/77 (3%)
Frame = +3
Query: 207 SSGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSV-WVALNPPGFAFIEF--ENLQEAEDA 377
S GG R++VGGL E + ++DL + F G +++V +V FA+I+F +
Sbjct: 6 SGGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRTKGRSFAYIDFSPSSTNSLTKL 65
Query: 378 CSAMNGTEMLGATLKVE 428
S NG G L++E
Sbjct: 66 FSTYNGCVWKGGRLRLE 82
>At5g04600.1 68418.m00460 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 222
Score = 41.5 bits (93), Expect = 8e-04
Identities = 25/81 (30%), Positives = 42/81 (51%), Gaps = 5/81 (6%)
Frame = +3
Query: 204 MSSGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPG-----FAFIEFENLQEA 368
+ + T +Y+G + G + ++E F ++G + V VA N F FI+FE+ + A
Sbjct: 55 LQNKATVLYIGRIPHGFYETEIEAFFSQFGTVKRVRVARNKKTGKSKHFGFIQFEDPEVA 114
Query: 369 EDACSAMNGTEMLGATLKVEI 431
E A AMN ++ LKV +
Sbjct: 115 EIAAGAMNDYLLMEHMLKVHV 135
>At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putative
DNA binding protein ACBF - Nicotiana tabacum,
PID:g1899188
Length = 415
Score = 41.5 bits (93), Expect = 8e-04
Identities = 19/69 (27%), Positives = 41/69 (59%)
Frame = +3
Query: 219 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGT 398
T ++VG + + + ++DL+ F ++G+L V + F+++ N AE A S +NGT
Sbjct: 278 TTIFVGAVDQSVTEDDLKSVFGQFGELVHVKIPAG-KRCGFVQYANRACAEQALSVLNGT 336
Query: 399 EMLGATLKV 425
++ G ++++
Sbjct: 337 QLGGQSIRL 345
>At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing
protein
Length = 527
Score = 41.1 bits (92), Expect = 0.001
Identities = 25/74 (33%), Positives = 42/74 (56%), Gaps = 6/74 (8%)
Frame = +3
Query: 222 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPP-----GFAFIEFENLQEAEDACSA 386
++YVG L + + L + F+ +G + V + L+P GF FI+F L+ ++ A A
Sbjct: 266 KLYVGNLHFNMSELQLRQIFEAFGPVELVQLPLDPETGQCKGFGFIQFVQLEHSKAAQIA 325
Query: 387 MNG-TEMLGATLKV 425
+NG E+ G T+KV
Sbjct: 326 LNGKLEIAGRTIKV 339
Score = 37.1 bits (82), Expect = 0.017
Identities = 15/45 (33%), Positives = 28/45 (62%)
Frame = +3
Query: 258 KEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMN 392
++D+ E KYG +N ++V N GF ++ F++++ A A AM+
Sbjct: 458 RDDVADECSKYGPVNHIYVDKNSAGFVYLRFQSVEAAAAAQRAMH 502
>At5g07290.1 68418.m00832 RNA recognition motif (RRM)-containing
protein Mei2-like protein - Arabidopsis thaliana,
EMBL:D86122
Length = 907
Score = 41.1 bits (92), Expect = 0.001
Identities = 23/73 (31%), Positives = 39/73 (53%)
Frame = +3
Query: 207 SSGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSA 386
SS G ++V L I E+L F YG++ V ++ +IEF ++++A+ A
Sbjct: 292 SSEGA-LWVNNLDSSISNEELHGIFSSYGEIREVRRTMHENSQVYIEFFDVRKAKVALQG 350
Query: 387 MNGTEMLGATLKV 425
+NG E+ G LK+
Sbjct: 351 LNGLEVAGRQLKL 363
>At3g12640.1 68416.m01573 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 674
Score = 41.1 bits (92), Expect = 0.001
Identities = 22/72 (30%), Positives = 40/72 (55%), Gaps = 5/72 (6%)
Frame = +3
Query: 225 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPP-----GFAFIEFENLQEAEDACSAM 389
++V + G K+ L R F+K+G++ ++ +P G A+IEF + AE+A S +
Sbjct: 518 IFVANVHFGATKDSLSRHFNKFGEVLKAFIVTDPATGQPSGSAYIEFTRKEAAENALS-L 576
Query: 390 NGTEMLGATLKV 425
+GT + LK+
Sbjct: 577 DGTSFMSRILKI 588
>At3g08000.1 68416.m00977 RNA-binding protein, putative similar to
RNA-binding protein from [Nicotiana tabacum]
GI:15822703, [Nicotiana sylvestris] GI:624925; contains
Pfam profile: PF00076 RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain)
Length = 143
Score = 41.1 bits (92), Expect = 0.001
Identities = 21/81 (25%), Positives = 44/81 (54%), Gaps = 5/81 (6%)
Frame = +3
Query: 207 SSGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPP-----GFAFIEFENLQEAE 371
+S +++++GGL + ++ L+ F +G++ V +A + GF F++F +A
Sbjct: 37 ASPSSKLFIGGLSWSVDEQSLKDAFSSFGEVAEVRIAYDKGSGRSRGFGFVDFAEEGDAL 96
Query: 372 DACSAMNGTEMLGATLKVEIS 434
A AM+G +LG L++ +
Sbjct: 97 SAKDAMDGKGLLGRPLRISFA 117
>At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (1/2/3) (AtRBP33) (cp31) {Arabidopsis
thaliana}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 289
Score = 40.7 bits (91), Expect = 0.001
Identities = 23/76 (30%), Positives = 38/76 (50%), Gaps = 5/76 (6%)
Frame = +3
Query: 222 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACSA 386
R+YVG L + LER F ++GK+ V + GF F++ N E A +A
Sbjct: 208 RIYVGNLPWDVDSGRLERLFSEHGKVVDARVVSDRETGRSRGFGFVQMSNENEVNVAIAA 267
Query: 387 MNGTEMLGATLKVEIS 434
++G + G +KV ++
Sbjct: 268 LDGQNLEGRAIKVNVA 283
Score = 29.9 bits (64), Expect = 2.6
Identities = 20/73 (27%), Positives = 32/73 (43%), Gaps = 5/73 (6%)
Frame = +3
Query: 222 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPP-----GFAFIEFENLQEAEDACSA 386
+++VG L + + L F++ G + V N GF F+ ++EAE A
Sbjct: 114 KLFVGNLPYDVDSQALAMLFEQAGTVEISEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEK 173
Query: 387 MNGTEMLGATLKV 425
N E+ G L V
Sbjct: 174 FNSFEVNGRRLTV 186
>At2g46610.1 68415.m05814 arginine/serine-rich splicing factor,
putative similar to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 250
Score = 40.7 bits (91), Expect = 0.001
Identities = 22/58 (37%), Positives = 33/58 (56%)
Frame = +3
Query: 225 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGT 398
VYVG + DLER F K+G++ V + G+AF+ FE+ ++AEDA + T
Sbjct: 4 VYVGNFDYDTRHSDLERLFSKFGRVKRVDM---KSGYAFVYFEDERDAEDAIRRTDNT 58
Score = 38.3 bits (85), Expect = 0.007
Identities = 18/58 (31%), Positives = 35/58 (60%)
Frame = +3
Query: 255 KKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTEMLGATLKVE 428
++ D+ER F+ YGK+ +V + N FAF++F ++A A + + +++L + VE
Sbjct: 108 RERDMERHFEPYGKVLNVRMRRN---FAFVQFATQEDATKALDSTHNSKLLDKVVSVE 162
>At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)
identical to GB:Q05196 from [Arabidopsis thaliana]
Length = 668
Score = 40.7 bits (91), Expect = 0.001
Identities = 23/69 (33%), Positives = 37/69 (53%), Gaps = 4/69 (5%)
Frame = +3
Query: 216 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPG----FAFIEFENLQEAEDACS 383
G+ +Y+ L + + E L+ F +YG + S V +N G F F+ + N +EA A
Sbjct: 327 GSNLYLKNLDDSVNDEKLKEMFSEYGNVTSCKVMMNSQGLSRGFGFVAYSNPEEALLAMK 386
Query: 384 AMNGTEMLG 410
MNG +M+G
Sbjct: 387 EMNG-KMIG 394
Score = 37.9 bits (84), Expect = 0.010
Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 4/66 (6%)
Frame = +3
Query: 219 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPG----FAFIEFENLQEAEDACSA 386
T VYV L + I ++L++ F KYG ++S V + G F F+ F + + A A
Sbjct: 225 TNVYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQSGNSRSFGFVNFVSPEAAAVAVEK 284
Query: 387 MNGTEM 404
MNG +
Sbjct: 285 MNGISL 290
Score = 33.5 bits (73), Expect = 0.21
Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 4/69 (5%)
Frame = +3
Query: 201 TMSSGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN----PPGFAFIEFENLQEA 368
T SG V++ L I + L F +G + S VA++ G+ F++FE + A
Sbjct: 126 TRLSGKGNVFIKNLDASIDNKALYETFSSFGTILSCKVAMDVVGRSKGYGFVQFEKEETA 185
Query: 369 EDACSAMNG 395
+ A +NG
Sbjct: 186 QAAIDKLNG 194
>At1g49760.1 68414.m05580 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
GB:AAF66825 GI:7673359 from [Nicotiana tabacum]
Length = 671
Score = 40.7 bits (91), Expect = 0.001
Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 4/63 (6%)
Frame = +3
Query: 219 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN----PPGFAFIEFENLQEAEDACSA 386
T VYV L E + E+L + F ++G S + + GF F+ FEN +A A A
Sbjct: 224 TNVYVKNLSESLSDEELNKVFGEFGVTTSCVIMRDGEGKSKGFGFVNFENSDDAARAVDA 283
Query: 387 MNG 395
+NG
Sbjct: 284 LNG 286
Score = 37.5 bits (83), Expect = 0.013
Identities = 23/79 (29%), Positives = 38/79 (48%), Gaps = 4/79 (5%)
Frame = +3
Query: 210 SGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFA----FIEFENLQEAEDA 377
S G+ +YV L E + + L F +G + S V +P G + F+ F +EA A
Sbjct: 324 SQGSNLYVKNLDESVTDDKLREHFAPFGTITSCKVMRDPSGVSRGSGFVAFSTPEEATRA 383
Query: 378 CSAMNGTEMLGATLKVEIS 434
+ MNG ++ L V ++
Sbjct: 384 ITEMNGKMIVTKPLYVALA 402
>At1g34140.1 68414.m04235 polyadenylate-binding protein, putative /
PABP, putative non-consensus splice donor TA at exon 1;
similar to polyadenylate-binding protein
(poly(A)-binding protein) from [Triticum aestivum]
GI:1737492, [Nicotiana tabacum] GI:7673355, {Arabidopsis
thaliana} SP|P42731; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 407
Score = 40.7 bits (91), Expect = 0.001
Identities = 24/63 (38%), Positives = 32/63 (50%), Gaps = 4/63 (6%)
Frame = +3
Query: 219 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPG----FAFIEFENLQEAEDACSA 386
T VYV LVE DL+R F ++G++ S V + G F F+ FE + A A
Sbjct: 119 TNVYVKNLVETATDADLKRLFGEFGEITSAVVMKDGEGKSRRFGFVNFEKAEAAVTAIEK 178
Query: 387 MNG 395
MNG
Sbjct: 179 MNG 181
Score = 36.3 bits (80), Expect = 0.029
Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 4/69 (5%)
Frame = +3
Query: 216 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFA----FIEFENLQEAEDACS 383
G +YV L + + LE F ++G + S V ++ G + F+EF +EA A
Sbjct: 222 GMNLYVKNLDDSVDNTKLEELFSEFGTITSCKVMVHSNGISKGVGFVEFSTSEEASKAML 281
Query: 384 AMNGTEMLG 410
MNG +M+G
Sbjct: 282 KMNG-KMVG 289
Score = 31.9 bits (69), Expect = 0.63
Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 4/67 (5%)
Frame = +3
Query: 210 SGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPG----FAFIEFENLQEAEDA 377
SG V+V L E I + L F +GK+ S VA + G + F++F + A
Sbjct: 28 SGRGNVFVKNLDESIDNKQLCDMFSAFGKVLSCKVARDASGVSKGYGFVQFYSDLSVYTA 87
Query: 378 CSAMNGT 398
C+ NGT
Sbjct: 88 CNFHNGT 94
>At1g07350.2 68414.m00784 transformer serine/arginine-rich
ribonucleoprotein, putative similar to GB:Y09506 from
[Nicotiana tabacum] (Plant Mol. Biol. 35 (3), 261-269
(1997))
Length = 129
Score = 40.7 bits (91), Expect = 0.001
Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 5/76 (6%)
Frame = +3
Query: 216 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNP-----PGFAFIEFENLQEAEDAC 380
G +YV GL + + DLE F K GK+ V + L+P GF FI +++ +A
Sbjct: 44 GNSLYVTGLSHRVTERDLEDHFAKEGKVTDVHLVLDPWTRESRGFGFISMKSVGDANRCI 103
Query: 381 SAMNGTEMLGATLKVE 428
+++ + + G + VE
Sbjct: 104 RSLDHSVLQGRVITVE 119
>At1g07350.1 68414.m00783 transformer serine/arginine-rich
ribonucleoprotein, putative similar to GB:Y09506 from
[Nicotiana tabacum] (Plant Mol. Biol. 35 (3), 261-269
(1997))
Length = 382
Score = 40.7 bits (91), Expect = 0.001
Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 5/76 (6%)
Frame = +3
Query: 216 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNP-----PGFAFIEFENLQEAEDAC 380
G +YV GL + + DLE F K GK+ V + L+P GF FI +++ +A
Sbjct: 74 GNSLYVTGLSHRVTERDLEDHFAKEGKVTDVHLVLDPWTRESRGFGFISMKSVGDANRCI 133
Query: 381 SAMNGTEMLGATLKVE 428
+++ + + G + VE
Sbjct: 134 RSLDHSVLQGRVITVE 149
>At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL30a)
almost identical to SC35-like splicing factor SCL30a
GI:9843661 from [Arabidopsis thaliana]; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 262
Score = 40.3 bits (90), Expect = 0.002
Identities = 23/74 (31%), Positives = 40/74 (54%), Gaps = 5/74 (6%)
Frame = +3
Query: 219 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACS 383
T + V L ++EDL R F+++G + +++ + P GF FI+F + +A +A
Sbjct: 37 TSLLVRNLRHDCRQEDLRRPFEQFGPVKDIYLPRDYYTGDPRGFGFIQFMDPADAAEAKH 96
Query: 384 AMNGTEMLGATLKV 425
M+G +LG L V
Sbjct: 97 QMDGYLLLGRELTV 110
>At1g55310.1 68414.m06318 SC35-like splicing factor, 33 kD (SCL33)
nearly identical to SC35-like splicing factor SCL33, 33
kD [Arabidopsis thaliana] GI:9843659
Length = 220
Score = 40.3 bits (90), Expect = 0.002
Identities = 22/74 (29%), Positives = 40/74 (54%), Gaps = 5/74 (6%)
Frame = +3
Query: 219 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACS 383
T + V L ++EDL + F+++G + +++ + P GF F++F + +A DA
Sbjct: 36 TSLLVRNLRHDCRQEDLRKSFEQFGPVKDIYLPRDYYTGDPRGFGFVQFMDPADAADAKH 95
Query: 384 AMNGTEMLGATLKV 425
M+G +LG L V
Sbjct: 96 HMDGYLLLGRELTV 109
>At5g10350.2 68418.m01201 polyadenylate-binding protein family
protein / PABP family protein contains weak similarity
to poly(A) binding protein II from [Mus musculus]
GI:2351846, [Xenopus laevis] GI:11527140; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 202
Score = 39.9 bits (89), Expect = 0.002
Identities = 22/71 (30%), Positives = 39/71 (54%), Gaps = 4/71 (5%)
Frame = +3
Query: 225 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN----PPGFAFIEFENLQEAEDACSAMN 392
VYVG + E+++ F G +N V + ++ P GFA++EF ++ ++A +N
Sbjct: 91 VYVGNVDYACTPEEVQLHFQTCGTVNRVTILMDKFGQPKGFAYVEFVEVEAVQEALQ-LN 149
Query: 393 GTEMLGATLKV 425
+E+ G LKV
Sbjct: 150 ESELHGRQLKV 160
>At5g10350.1 68418.m01200 polyadenylate-binding protein family
protein / PABP family protein contains weak similarity
to poly(A) binding protein II from [Mus musculus]
GI:2351846, [Xenopus laevis] GI:11527140; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 217
Score = 39.9 bits (89), Expect = 0.002
Identities = 22/71 (30%), Positives = 39/71 (54%), Gaps = 4/71 (5%)
Frame = +3
Query: 225 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN----PPGFAFIEFENLQEAEDACSAMN 392
VYVG + E+++ F G +N V + ++ P GFA++EF ++ ++A +N
Sbjct: 91 VYVGNVDYACTPEEVQLHFQTCGTVNRVTILMDKFGQPKGFAYVEFVEVEAVQEALQ-LN 149
Query: 393 GTEMLGATLKV 425
+E+ G LKV
Sbjct: 150 ESELHGRQLKV 160
>At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (RNA-binding protein 1/2/3) (AtRBP33)
(RNA-binding protein cp31) {Arabidopsis thaliana};
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 329
Score = 39.9 bits (89), Expect = 0.002
Identities = 22/76 (28%), Positives = 39/76 (51%), Gaps = 5/76 (6%)
Frame = +3
Query: 222 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACSA 386
RVYVG L + LE+ F ++GK+ V + GF F+ ++ E +A SA
Sbjct: 245 RVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISA 304
Query: 387 MNGTEMLGATLKVEIS 434
++G + G ++V ++
Sbjct: 305 LDGQNLEGRAIRVNVA 320
Score = 29.9 bits (64), Expect = 2.6
Identities = 19/73 (26%), Positives = 32/73 (43%), Gaps = 5/73 (6%)
Frame = +3
Query: 222 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPP-----GFAFIEFENLQEAEDACSA 386
+++VG L + + L F++ G + V N GF F+ ++ EAE A
Sbjct: 151 KLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEK 210
Query: 387 MNGTEMLGATLKV 425
N ++ G L V
Sbjct: 211 FNRYDLNGRLLTV 223
>At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 352
Score = 39.9 bits (89), Expect = 0.002
Identities = 24/73 (32%), Positives = 40/73 (54%), Gaps = 5/73 (6%)
Frame = +3
Query: 225 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNP-----PGFAFIEFENLQEAEDACSAM 389
VYVGG+ + + DL F +YG++ V + + GFAF+ +E+ + A +
Sbjct: 38 VYVGGIPFDLTEGDLLAVFSQYGEIVDVNLIRDKGTGKSKGFAFLAYEDQRSTILAVDNL 97
Query: 390 NGTEMLGATLKVE 428
NG +LG T+KV+
Sbjct: 98 NGALVLGRTIKVD 110
>At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putative
similar to gb|U90212 DNA binding protein ACBF from
Nicotiana tabacum and contains 3 PF|00076 RNA
recognition motif domains. ESTs gb|T44278, gb|R65195,
gb|N65904, gb|H37499, gb|R90487, gb|N95952, gb|T44278,
gb|Z20166, gb|N96891, gb|W43137, gb|F15504, gb|F1
Length = 405
Score = 39.9 bits (89), Expect = 0.002
Identities = 20/69 (28%), Positives = 37/69 (53%)
Frame = +3
Query: 219 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGT 398
T V+VGGL + + L+ F +YG++ V + F++F AE+A +NG
Sbjct: 261 TTVFVGGLDASVTDDHLKNVFSQYGEIVHVKIPAG-KRCGFVQFSEKSCAEEALRMLNGV 319
Query: 399 EMLGATLKV 425
++ G T+++
Sbjct: 320 QLGGTTVRL 328
>At5g04280.1 68418.m00421 glycine-rich RNA-binding protein
Length = 310
Score = 39.5 bits (88), Expect = 0.003
Identities = 20/67 (29%), Positives = 35/67 (52%), Gaps = 5/67 (7%)
Frame = +3
Query: 216 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVAL-----NPPGFAFIEFENLQEAEDAC 380
G+R++VGGL + DLER F ++G + + L GF FI F + + +++
Sbjct: 6 GSRIFVGGLSPEVTDRDLERAFSRFGDILDCQIMLERDTGRSRGFGFITFADRRAMDESI 65
Query: 381 SAMNGTE 401
M+G +
Sbjct: 66 REMHGRD 72
>At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana] ; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 87
Score = 39.5 bits (88), Expect = 0.003
Identities = 25/76 (32%), Positives = 36/76 (47%), Gaps = 5/76 (6%)
Frame = +3
Query: 219 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACS 383
TRVYVG L + L F YG + V + GF F+ + + EAE A S
Sbjct: 3 TRVYVGNLSPTTTDDMLREAFSGYGNVVDAIVMRDRYTDRSRGFGFVTYSSHSEAEAAVS 62
Query: 384 AMNGTEMLGATLKVEI 431
M+G E+ G + V++
Sbjct: 63 GMDGKELNGRRVSVKL 78
>At2g42890.2 68415.m05312 RNA recognition motif (RRM)-containing
protein
Length = 830
Score = 38.7 bits (86), Expect = 0.006
Identities = 18/61 (29%), Positives = 36/61 (59%)
Frame = +3
Query: 252 IKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTEMLGATLKVEI 431
+ ++L + F YG++ + N FIE+ ++++AE A A+N +E+ G +K+E+
Sbjct: 281 VSNDELLQLFGAYGEIREIRETPNRRFHRFIEYYDVRDAETALKALNRSEIGGKCIKLEL 340
Query: 432 S 434
S
Sbjct: 341 S 341
>At2g42890.1 68415.m05311 RNA recognition motif (RRM)-containing
protein
Length = 843
Score = 38.7 bits (86), Expect = 0.006
Identities = 18/61 (29%), Positives = 36/61 (59%)
Frame = +3
Query: 252 IKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTEMLGATLKVEI 431
+ ++L + F YG++ + N FIE+ ++++AE A A+N +E+ G +K+E+
Sbjct: 294 VSNDELLQLFGAYGEIREIRETPNRRFHRFIEYYDVRDAETALKALNRSEIGGKCIKLEL 353
Query: 432 S 434
S
Sbjct: 354 S 354
>At2g36660.1 68415.m04496 polyadenylate-binding protein, putative /
PABP, putative
Length = 609
Score = 38.7 bits (86), Expect = 0.006
Identities = 19/65 (29%), Positives = 38/65 (58%), Gaps = 4/65 (6%)
Frame = +3
Query: 219 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPP----GFAFIEFENLQEAEDACSA 386
T +Y+ L + ++ L +F ++GK+ S+ +A + G+AF+ F+N ++A A
Sbjct: 201 TNLYMKNLDADVSEDLLREKFAEFGKIVSLAIAKDENRLCRGYAFVNFDNPEDARRAAET 260
Query: 387 MNGTE 401
+NGT+
Sbjct: 261 VNGTK 265
>At2g46610.2 68415.m05813 arginine/serine-rich splicing factor,
putative similar to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 224
Score = 38.3 bits (85), Expect = 0.007
Identities = 18/58 (31%), Positives = 35/58 (60%)
Frame = +3
Query: 255 KKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTEMLGATLKVE 428
++ D+ER F+ YGK+ +V + N FAF++F ++A A + + +++L + VE
Sbjct: 82 RERDMERHFEPYGKVLNVRMRRN---FAFVQFATQEDATKALDSTHNSKLLDKVVSVE 136
>At1g18630.1 68414.m02322 glycine-rich RNA-binding protein, putative
similar to glycine-rich RNA-binding protein from
{Sorghum bicolor} SP|Q99070, GI:1778373 from [Pisum
sativum]; contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 155
Score = 37.9 bits (84), Expect = 0.010
Identities = 21/74 (28%), Positives = 38/74 (51%), Gaps = 5/74 (6%)
Frame = +3
Query: 219 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACS 383
++++VGGL E L+ F +GK+ V L+ GF F+ +++++ A +A
Sbjct: 36 SKIFVGGLSPSTDVELLKEAFGSFGKIVDAVVVLDRESGLSRGFGFVTYDSIEVANNAMQ 95
Query: 384 AMNGTEMLGATLKV 425
AM E+ G + V
Sbjct: 96 AMQNKELDGRIIGV 109
>At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 105
Score = 37.5 bits (83), Expect = 0.013
Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 5/70 (7%)
Frame = +3
Query: 204 MSSGGTRVYVGGLVEGIKKEDLEREFDKYG-----KLNSVWVALNPPGFAFIEFENLQEA 368
MS R +VGGL EDL+R F ++G K+ + + GF F+ F++ +
Sbjct: 1 MSEVEYRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAM 60
Query: 369 EDACSAMNGT 398
DA MNG+
Sbjct: 61 RDAIEEMNGS 70
>At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 565
Score = 37.5 bits (83), Expect = 0.013
Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 5/76 (6%)
Frame = +3
Query: 213 GGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVAL-----NPPGFAFIEFENLQEAEDA 377
G R++VGGL + + + +G L + N G+AF +++L + A
Sbjct: 357 GPDRIFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQDLSVTDIA 416
Query: 378 CSAMNGTEMLGATLKV 425
C+A+NG +M TL V
Sbjct: 417 CAALNGIKMGDKTLTV 432
>At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 542
Score = 37.5 bits (83), Expect = 0.013
Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 5/76 (6%)
Frame = +3
Query: 213 GGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVAL-----NPPGFAFIEFENLQEAEDA 377
G R++VGGL + + + +G L + N G+AF +++L + A
Sbjct: 357 GPDRIFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQDLSVTDIA 416
Query: 378 CSAMNGTEMLGATLKV 425
C+A+NG +M TL V
Sbjct: 417 CAALNGIKMGDKTLTV 432
>At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 573
Score = 37.5 bits (83), Expect = 0.013
Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 5/76 (6%)
Frame = +3
Query: 213 GGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVAL-----NPPGFAFIEFENLQEAEDA 377
G R++VGGL + + + +G L + N G+AF +++L + A
Sbjct: 357 GPDRIFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQDLSVTDIA 416
Query: 378 CSAMNGTEMLGATLKV 425
C+A+NG +M TL V
Sbjct: 417 CAALNGIKMGDKTLTV 432
>At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana]; contains Pfam profile: PF00076
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 136
Score = 37.5 bits (83), Expect = 0.013
Identities = 20/77 (25%), Positives = 38/77 (49%), Gaps = 5/77 (6%)
Frame = +3
Query: 219 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPP-----GFAFIEFENLQEAEDACS 383
++++VGGL G L++ F +G++ V + GF F+ F A +A
Sbjct: 35 SKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIK 94
Query: 384 AMNGTEMLGATLKVEIS 434
M+G E+ G ++V ++
Sbjct: 95 EMDGKELNGRQIRVNLA 111
>At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana]; contains Pfam profile: PF00076
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 136
Score = 37.5 bits (83), Expect = 0.013
Identities = 20/77 (25%), Positives = 38/77 (49%), Gaps = 5/77 (6%)
Frame = +3
Query: 219 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPP-----GFAFIEFENLQEAEDACS 383
++++VGGL G L++ F +G++ V + GF F+ F A +A
Sbjct: 35 SKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIK 94
Query: 384 AMNGTEMLGATLKVEIS 434
M+G E+ G ++V ++
Sbjct: 95 EMDGKELNGRQIRVNLA 111
>At5g51120.1 68418.m06339 polyadenylate-binding protein, putative /
PABP, putative contains similarity to poly(A)-binding
protein II [Mus musculus] GI:2351846; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 227
Score = 37.1 bits (82), Expect = 0.017
Identities = 19/71 (26%), Positives = 39/71 (54%), Gaps = 4/71 (5%)
Frame = +3
Query: 225 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN----PPGFAFIEFENLQEAEDACSAMN 392
+YVG + E++++ F G +N V + + P GFA++EF ++ +++ +N
Sbjct: 105 IYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEVEAVQNSL-ILN 163
Query: 393 GTEMLGATLKV 425
+E+ G +KV
Sbjct: 164 ESELHGRQIKV 174
>At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing
protein similar to nucleolin protein; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 495
Score = 37.1 bits (82), Expect = 0.017
Identities = 20/78 (25%), Positives = 41/78 (52%), Gaps = 5/78 (6%)
Frame = +3
Query: 216 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWV-----ALNPPGFAFIEFENLQEAEDAC 380
G+ V++GGL + +EDL ++ G++ V + + + G+AF+ F+ A+ A
Sbjct: 115 GSEVFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQKAI 174
Query: 381 SAMNGTEMLGATLKVEIS 434
++ E G T++ +S
Sbjct: 175 EELHSKEFKGKTIRCSLS 192
>At3g16380.1 68416.m02074 polyadenylate-binding protein, putative /
PABP, putative similar to polyadenylate-binding protein
(poly(A)-binding protein) from {Arabidopsis thaliana}
SP|P42731, [Cucumis sativus] GI:7528270, {Homo sapiens}
SP|Q13310, {Arabidopsis thaliana} SP|Q05196; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 537
Score = 37.1 bits (82), Expect = 0.017
Identities = 25/75 (33%), Positives = 36/75 (48%), Gaps = 3/75 (4%)
Frame = +3
Query: 210 SGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVAL---NPPGFAFIEFENLQEAEDAC 380
+G +YV L I LER F +G + S V GF F++F+ Q A A
Sbjct: 109 TGFANLYVKNLDSSITSSCLERMFCPFGSILSCKVVEENGQSKGFGFVQFDTEQSAVSAR 168
Query: 381 SAMNGTEMLGATLKV 425
SA++G+ + G L V
Sbjct: 169 SALHGSMVYGKKLFV 183
Score = 36.3 bits (80), Expect = 0.029
Identities = 21/66 (31%), Positives = 35/66 (53%), Gaps = 4/66 (6%)
Frame = +3
Query: 219 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN----PPGFAFIEFENLQEAEDACSA 386
T VYV L+E + + L F +YG ++SV V + GF F+ F N + A+ A +
Sbjct: 202 TNVYVKNLIETVTDDCLHTLFSQYGTVSSVVVMRDGMGRSRGFGFVNFCNPENAKKAMES 261
Query: 387 MNGTEM 404
+ G ++
Sbjct: 262 LCGLQL 267
Score = 32.7 bits (71), Expect = 0.36
Identities = 21/76 (27%), Positives = 37/76 (48%), Gaps = 4/76 (5%)
Frame = +3
Query: 219 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNP----PGFAFIEFENLQEAEDACSA 386
+ +YV L E + + L F YG++ S V + GF F+ F N +E++ A
Sbjct: 304 SNLYVKNLSESMNETRLREIFGCYGQIVSAKVMCHENGRSKGFGFVCFSNCEESKQAKRY 363
Query: 387 MNGTEMLGATLKVEIS 434
+NG + G + V ++
Sbjct: 364 LNGFLVDGKPIVVRVA 379
>At1g29400.2 68414.m03597 RNA recognition motif (RRM)-containing
protein similar to GI:6650523 from [Arabidopsis
thaliana]
Length = 800
Score = 37.1 bits (82), Expect = 0.017
Identities = 24/73 (32%), Positives = 37/73 (50%)
Frame = +3
Query: 216 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNG 395
GT V V L I +DL F +G++ + + F+EF +++ AE A A+N
Sbjct: 253 GTLV-VFNLDPSISNDDLHGIFGAHGEIKEIRETPHKRHHKFVEFYDVRGAEAALKALNR 311
Query: 396 TEMLGATLKVEIS 434
E+ G +KVE S
Sbjct: 312 CEIAGKRIKVEPS 324
Score = 29.1 bits (62), Expect = 4.5
Identities = 12/70 (17%), Positives = 32/70 (45%)
Frame = +3
Query: 225 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTEM 404
++V + ++ +L F++YG + +++ GF I + +++ A A ++ +
Sbjct: 170 LFVRNINSNVEDSELTALFEQYGDIRTLYTTCKHRGFVMISYYDIRSARMAMRSLQNKPL 229
Query: 405 LGATLKVEIS 434
L + S
Sbjct: 230 RRRKLDIHFS 239
>At1g29400.1 68414.m03596 RNA recognition motif (RRM)-containing
protein similar to GI:6650523 from [Arabidopsis
thaliana]
Length = 800
Score = 37.1 bits (82), Expect = 0.017
Identities = 24/73 (32%), Positives = 37/73 (50%)
Frame = +3
Query: 216 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNG 395
GT V V L I +DL F +G++ + + F+EF +++ AE A A+N
Sbjct: 253 GTLV-VFNLDPSISNDDLHGIFGAHGEIKEIRETPHKRHHKFVEFYDVRGAEAALKALNR 311
Query: 396 TEMLGATLKVEIS 434
E+ G +KVE S
Sbjct: 312 CEIAGKRIKVEPS 324
Score = 29.1 bits (62), Expect = 4.5
Identities = 12/70 (17%), Positives = 32/70 (45%)
Frame = +3
Query: 225 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTEM 404
++V + ++ +L F++YG + +++ GF I + +++ A A ++ +
Sbjct: 170 LFVRNINSNVEDSELTALFEQYGDIRTLYTTCKHRGFVMISYYDIRSARMAMRSLQNKPL 229
Query: 405 LGATLKVEIS 434
L + S
Sbjct: 230 RRRKLDIHFS 239
>At1g20880.1 68414.m02615 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM);
is the location of EST 197B1T7 , gb|AA597386
Length = 274
Score = 37.1 bits (82), Expect = 0.017
Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 5/59 (8%)
Frame = +3
Query: 219 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDAC 380
T+V+VGGL + E L R FD+YG + V + G+ F+ F + + A AC
Sbjct: 24 TKVFVGGLAWETQSETLRRHFDQYGDILEAVVITDKNTGRSKGYGFVTFRDPEAARRAC 82
>At1g03457.2 68414.m00327 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 438
Score = 37.1 bits (82), Expect = 0.017
Identities = 20/82 (24%), Positives = 41/82 (50%), Gaps = 5/82 (6%)
Frame = +3
Query: 201 TMSSGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPG-----FAFIEFENLQE 365
T G +++ + + ++L F +GK+ S V ++ F FI +++
Sbjct: 333 TEGPAGANLFIYNIPREFEDQELAATFQPFGKVLSAKVFVDKATGISKCFGFISYDSQAA 392
Query: 366 AEDACSAMNGTEMLGATLKVEI 431
A++A + MNG ++ G LKV++
Sbjct: 393 AQNAINTMNGCQLSGKKLKVQL 414
Score = 31.1 bits (67), Expect = 1.1
Identities = 14/66 (21%), Positives = 36/66 (54%), Gaps = 4/66 (6%)
Frame = +3
Query: 222 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWV----ALNPPGFAFIEFENLQEAEDACSAM 389
+++VG L + + + +++ F +YG + + + G F+++E+ ++A A A+
Sbjct: 110 KLFVGMLPKNVSETEVQSLFSEYGTIKDLQILRGSLQTSKGCLFLKYESKEQAVAAMEAL 169
Query: 390 NGTEML 407
NG ++
Sbjct: 170 NGRHIM 175
>At1g03457.1 68414.m00326 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 429
Score = 37.1 bits (82), Expect = 0.017
Identities = 20/82 (24%), Positives = 41/82 (50%), Gaps = 5/82 (6%)
Frame = +3
Query: 201 TMSSGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPG-----FAFIEFENLQE 365
T G +++ + + ++L F +GK+ S V ++ F FI +++
Sbjct: 324 TEGPAGANLFIYNIPREFEDQELAATFQPFGKVLSAKVFVDKATGISKCFGFISYDSQAA 383
Query: 366 AEDACSAMNGTEMLGATLKVEI 431
A++A + MNG ++ G LKV++
Sbjct: 384 AQNAINTMNGCQLSGKKLKVQL 405
Score = 31.1 bits (67), Expect = 1.1
Identities = 14/66 (21%), Positives = 36/66 (54%), Gaps = 4/66 (6%)
Frame = +3
Query: 222 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWV----ALNPPGFAFIEFENLQEAEDACSAM 389
+++VG L + + + +++ F +YG + + + G F+++E+ ++A A A+
Sbjct: 101 KLFVGMLPKNVSETEVQSLFSEYGTIKDLQILRGSLQTSKGCLFLKYESKEQAVAAMEAL 160
Query: 390 NGTEML 407
NG ++
Sbjct: 161 NGRHIM 166
>At5g53680.1 68418.m06668 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 169
Score = 36.7 bits (81), Expect = 0.022
Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 5/65 (7%)
Frame = +3
Query: 219 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACS 383
T++YVGGL +KE L F ++G++ V V + G+ F+ F++ + A AC
Sbjct: 13 TKIYVGGLPWTTRKEGLINFFKRFGEIIHVNVVCDRETDRSQGYGFVTFKDAESATRACK 72
Query: 384 AMNGT 398
N T
Sbjct: 73 DPNPT 77
>At5g06210.1 68418.m00693 RNA-binding protein, putative contains
similarity to RNA-binding protein from [Nicotiana
tabacum] GI:15822703, [Nicotiana sylvestris] GI:624925,
[Solanum tuberosum] GI:15822705; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 146
Score = 36.7 bits (81), Expect = 0.022
Identities = 19/75 (25%), Positives = 38/75 (50%), Gaps = 5/75 (6%)
Frame = +3
Query: 219 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACS 383
+++++GGL ++ L F K G++ + ++ GF F+ F + EA+ A
Sbjct: 34 SKLFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEAQKALM 93
Query: 384 AMNGTEMLGATLKVE 428
NG ++ G T+ V+
Sbjct: 94 EFNGQQLNGRTIFVD 108
>At3g55460.1 68416.m06159 SC35-like splicing factor, 30 kD (SCL30)
nearly identical to SC35-like splicing factor SCL30, 30
kD [Arabidopsis thaliana] GI:9843657;
Serine/arginine-rich protein/putative splicing factor,
Arabidopdis thaliana, EMBL:AF099940; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 262
Score = 36.7 bits (81), Expect = 0.022
Identities = 18/65 (27%), Positives = 35/65 (53%), Gaps = 5/65 (7%)
Frame = +3
Query: 255 KKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACSAMNGTEMLGATL 419
+ E+L F+++G + V++ + P GFAF+EF + +A +A +MN G +
Sbjct: 59 RPEELREPFERFGPVRDVYIPRDYYSGQPRGFAFVEFVDAYDAGEAQRSMNRRSFAGREI 118
Query: 420 KVEIS 434
V ++
Sbjct: 119 TVVVA 123
>At5g65260.1 68418.m08209 polyadenylate-binding protein family
protein / PABP family protein low similarity to
poly(A)-binding protein II [Drosophila melanogaster]
GI:6007612; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
domain
Length = 220
Score = 36.3 bits (80), Expect = 0.029
Identities = 20/71 (28%), Positives = 39/71 (54%), Gaps = 4/71 (5%)
Frame = +3
Query: 225 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN----PPGFAFIEFENLQEAEDACSAMN 392
V+VG + E++++ F G ++ V + + P GFA++EF ++ ++A +N
Sbjct: 94 VFVGNVDYACTPEEVQQHFQTCGTVHRVTILTDKFGQPKGFAYVEFVEVEAVQEALQ-LN 152
Query: 393 GTEMLGATLKV 425
+E+ G LKV
Sbjct: 153 ESELHGRQLKV 163
>At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing
protein
Length = 809
Score = 36.3 bits (80), Expect = 0.029
Identities = 21/75 (28%), Positives = 37/75 (49%), Gaps = 5/75 (6%)
Frame = +3
Query: 225 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNP-----PGFAFIEFENLQEAEDACSAM 389
++VG L +G +EDL++ F G++ V + NP G AF+ F +++A+ A +
Sbjct: 216 IFVGSLDKGASEEDLKKVFGHVGEVTEVRILKNPQTKKSKGSAFLRFATVEQAKRAVKEL 275
Query: 390 NGTEMLGATLKVEIS 434
+ G V S
Sbjct: 276 KSPMINGKKCGVTAS 290
>At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 460
Score = 35.9 bits (79), Expect = 0.039
Identities = 22/74 (29%), Positives = 39/74 (52%), Gaps = 5/74 (6%)
Frame = +3
Query: 222 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACSA 386
+++VGGL I +E+ + FD++G + V V + P GF FI F++ +A D
Sbjct: 111 KIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDS-DDAVDRVLH 169
Query: 387 MNGTEMLGATLKVE 428
E+ G ++V+
Sbjct: 170 KTFHELNGKLVEVK 183
>At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 460
Score = 35.9 bits (79), Expect = 0.039
Identities = 22/74 (29%), Positives = 39/74 (52%), Gaps = 5/74 (6%)
Frame = +3
Query: 222 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACSA 386
+++VGGL I +E+ + FD++G + V V + P GF FI F++ +A D
Sbjct: 111 KIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDS-DDAVDRVLH 169
Query: 387 MNGTEMLGATLKVE 428
E+ G ++V+
Sbjct: 170 KTFHELNGKLVEVK 183
>At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 448
Score = 35.9 bits (79), Expect = 0.039
Identities = 22/74 (29%), Positives = 39/74 (52%), Gaps = 5/74 (6%)
Frame = +3
Query: 222 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACSA 386
+++VGGL I +E+ + FD++G + V V + P GF FI F++ +A D
Sbjct: 111 KIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDS-DDAVDRVLH 169
Query: 387 MNGTEMLGATLKVE 428
E+ G ++V+
Sbjct: 170 KTFHELNGKLVEVK 183
>At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
chloroplast RNA-binding protein (cp33) GB:BAA06523
(Arabidopsis thaliana) (Plant Mol. Biol. 27 (3), 529-539
(1995)); contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 329
Score = 35.9 bits (79), Expect = 0.039
Identities = 22/76 (28%), Positives = 38/76 (50%), Gaps = 5/76 (6%)
Frame = +3
Query: 222 RVYVGGLVEGIKKEDLEREF-DKYGKLNSVWV----ALNPPGFAFIEFENLQEAEDACSA 386
+VY G L + + L+ F D+ G L + + GF FI FE+ + + A +
Sbjct: 220 KVYAGNLGWNLTSQGLKDAFGDQPGVLGAKVIYERNTGRSRGFGFISFESAENVQSALAT 279
Query: 387 MNGTEMLGATLKVEIS 434
MNG E+ G L++ ++
Sbjct: 280 MNGVEVEGRALRLNLA 295
>At2g16260.1 68415.m01862 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein from {Daucus
carota} SP|Q03878, {Sinapis alba} SP|P49311, {Brassica
napus} SP|Q05966, {Arabidopsis thaliana} SP|Q03251;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 185
Score = 35.9 bits (79), Expect = 0.039
Identities = 19/74 (25%), Positives = 37/74 (50%), Gaps = 5/74 (6%)
Frame = +3
Query: 222 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACSA 386
R +VGGL ++ +ER F+++G++ + ++ GF F+ F++ A
Sbjct: 45 RCFVGGLAWATDEQSIERCFNEFGEVFDSKIIIDRETGRSKGFRFVTFKDEDSMRTAIDR 104
Query: 387 MNGTEMLGATLKVE 428
MNG E+ G + +
Sbjct: 105 MNGQELDGRNITAQ 118
>At1g13690.1 68414.m01609 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif
Length = 177
Score = 35.9 bits (79), Expect = 0.039
Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 5/72 (6%)
Frame = +3
Query: 225 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPG-----FAFIEFENLQEAEDACSAM 389
+YVGGL + + + L F +G + V L+ F F+ F ++A A M
Sbjct: 15 LYVGGLADEVNESILHAAFIPFGDIKDVKTPLDQANQKHRSFGFVTFLEREDASAAMDNM 74
Query: 390 NGTEMLGATLKV 425
+G E+ G L V
Sbjct: 75 DGAELYGRVLTV 86
>At5g44200.1 68418.m05408 nuclear cap-binding protein, putative
similar to SP|P52298 20 kDa nuclear cap binding protein
(CBP20) (NCBP interacting protein 1) {Homo sapiens};
non-consensus AT donor splice site at exon 4, AC
acceptor splice site at exon 5; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 257
Score = 35.5 bits (78), Expect = 0.051
Identities = 20/75 (26%), Positives = 39/75 (52%), Gaps = 5/75 (6%)
Frame = +3
Query: 219 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACS 383
T VY+G + +E L F + G++ + + L+ P GF F+ F + ++ EDA
Sbjct: 34 TTVYIGNVSFYTTEEQLYELFSRAGEIKKIIMGLDKNTKTPCGFCFVLFYSREDTEDAVK 93
Query: 384 AMNGTEMLGATLKVE 428
++GT + ++V+
Sbjct: 94 YISGTILDDRPIRVD 108
>At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative
Length = 425
Score = 35.5 bits (78), Expect = 0.051
Identities = 24/75 (32%), Positives = 36/75 (48%), Gaps = 5/75 (6%)
Frame = +3
Query: 225 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACSAM 389
+++G L + + L F + G+L SV V N P G+ FIEF + AE
Sbjct: 26 LWIGDLQYWVDENYLTSCFSQTGELVSVKVIRNKITGQPEGYGFIEFISHAAAERTLQTY 85
Query: 390 NGTEMLGATLKVEIS 434
NGT+M G L ++
Sbjct: 86 NGTQMPGTELTFRLN 100
>At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)
SP|Q03250 Glycine-rich RNA-binding protein 7
{Arabidopsis thaliana}
Length = 159
Score = 35.5 bits (78), Expect = 0.051
Identities = 25/81 (30%), Positives = 39/81 (48%), Gaps = 7/81 (8%)
Frame = +3
Query: 204 MSSGGT--RVYVGGLVEGIKKEDLEREFDKYG-----KLNSVWVALNPPGFAFIEFENLQ 362
M+SG R +VGGL LE F +YG K+ + GF F+ F++ +
Sbjct: 1 MASGDVEYRCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEK 60
Query: 363 EAEDACSAMNGTEMLGATLKV 425
+DA MNG ++ G ++ V
Sbjct: 61 AMKDAIEGMNGQDLDGRSITV 81
>At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)
SP|Q03250 Glycine-rich RNA-binding protein 7
{Arabidopsis thaliana}
Length = 176
Score = 35.5 bits (78), Expect = 0.051
Identities = 25/81 (30%), Positives = 39/81 (48%), Gaps = 7/81 (8%)
Frame = +3
Query: 204 MSSGGT--RVYVGGLVEGIKKEDLEREFDKYG-----KLNSVWVALNPPGFAFIEFENLQ 362
M+SG R +VGGL LE F +YG K+ + GF F+ F++ +
Sbjct: 1 MASGDVEYRCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEK 60
Query: 363 EAEDACSAMNGTEMLGATLKV 425
+DA MNG ++ G ++ V
Sbjct: 61 AMKDAIEGMNGQDLDGRSITV 81
>At1g76460.1 68414.m08893 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 285
Score = 35.5 bits (78), Expect = 0.051
Identities = 20/60 (33%), Positives = 34/60 (56%), Gaps = 5/60 (8%)
Frame = +3
Query: 219 TRVYVGGLVEGIKKEDLEREFDKYGK-LNSVWVA----LNPPGFAFIEFENLQEAEDACS 383
T+V+VGGL + E L + F++YG+ L +V +A G+ F+ F + + A AC+
Sbjct: 24 TKVFVGGLAWETQSETLRQHFEQYGEILEAVVIADKNTGRSKGYGFVTFRDPEAARRACA 83
>At3g11400.1 68416.m01390 eukaryotic translation initiation factor
3G / eIF3g nearly identical to eukaryotic translation
initiation factor 3g [Arabidopsis thaliana] GI:12407751
Length = 294
Score = 35.1 bits (77), Expect = 0.068
Identities = 22/73 (30%), Positives = 37/73 (50%), Gaps = 5/73 (6%)
Frame = +3
Query: 225 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPP-----GFAFIEFENLQEAEDACSAM 389
V V L E ++ DL F +G + V+VA++ GF F+ F + ++A+ A + +
Sbjct: 215 VRVTNLSEDTREPDLMELFHPFGAVTRVYVAIDQKTGVSRGFGFVNFVSREDAQRAINKL 274
Query: 390 NGTEMLGATLKVE 428
NG L+VE
Sbjct: 275 NGYGYDNLILRVE 287
>At1g74230.1 68414.m08597 glycine-rich RNA-binding protein similar
to RNA-binding protein GB:S46286 from [Nicotiana
sylvestris]
Length = 289
Score = 35.1 bits (77), Expect = 0.068
Identities = 19/74 (25%), Positives = 40/74 (54%), Gaps = 5/74 (6%)
Frame = +3
Query: 219 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACS 383
++++VGG+ + L F KYG++ + ++ GFAF+ F + +EA +A
Sbjct: 34 SKIFVGGISYSTDEFGLREAFSKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEASNAMQ 93
Query: 384 AMNGTEMLGATLKV 425
++G ++ G ++V
Sbjct: 94 -LDGQDLHGRRIRV 106
>At5g59860.1 68418.m07506 RNA recognition motif (RRM)-containing
protein similar to SP|Q14011 Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) {Homo
sapiens}; contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 157
Score = 34.7 bits (76), Expect = 0.090
Identities = 22/70 (31%), Positives = 32/70 (45%)
Frame = +3
Query: 219 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGT 398
T V GL + L + F + +L P GF FI FE+ +A+ A A+NG
Sbjct: 71 TCVSNSGLSAYTTDQSLRQLFAPFARLIKDQQTQRPKGFGFITFESEDDAQKALKALNGK 130
Query: 399 EMLGATLKVE 428
+ G + VE
Sbjct: 131 IVNGRLIFVE 140
>At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 455
Score = 34.7 bits (76), Expect = 0.090
Identities = 24/82 (29%), Positives = 42/82 (51%), Gaps = 8/82 (9%)
Frame = +3
Query: 207 SSGGTR---VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQ 362
+ GG R ++VGGL I + + + FD++G + V V + P GF FI F++ +
Sbjct: 115 NGGGARTKKIFVGGLPSSITEAEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDS-E 173
Query: 363 EAEDACSAMNGTEMLGATLKVE 428
E+ D E+ G ++V+
Sbjct: 174 ESVDMVLHKTFHELNGKMVEVK 195
>At4g03110.2 68417.m00421 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3
like factor 3 [Homo sapiens] GI:12746392; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 439
Score = 34.7 bits (76), Expect = 0.090
Identities = 18/75 (24%), Positives = 42/75 (56%), Gaps = 5/75 (6%)
Frame = +3
Query: 222 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWV----ALNPPGFAFIEFENLQEAEDACSAM 389
+++VG L + + + +++ F KYG + + + G AF+++E ++A A ++
Sbjct: 107 KLFVGMLPKNVSEAEVQSLFSKYGTIKDLQILRGAQQTSKGCAFLKYETKEQAVSAMESI 166
Query: 390 NGT-EMLGATLKVEI 431
NG +M G+T+ + +
Sbjct: 167 NGKHKMEGSTVPLVV 181
>At4g03110.1 68417.m00420 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3
like factor 3 [Homo sapiens] GI:12746392; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 441
Score = 34.7 bits (76), Expect = 0.090
Identities = 18/75 (24%), Positives = 42/75 (56%), Gaps = 5/75 (6%)
Frame = +3
Query: 222 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWV----ALNPPGFAFIEFENLQEAEDACSAM 389
+++VG L + + + +++ F KYG + + + G AF+++E ++A A ++
Sbjct: 107 KLFVGMLPKNVSEAEVQSLFSKYGTIKDLQILRGAQQTSKGCAFLKYETKEQAVSAMESI 166
Query: 390 NGT-EMLGATLKVEI 431
NG +M G+T+ + +
Sbjct: 167 NGKHKMEGSTVPLVV 181
Score = 29.5 bits (63), Expect = 3.4
Identities = 17/77 (22%), Positives = 36/77 (46%), Gaps = 5/77 (6%)
Frame = +3
Query: 216 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPG-----FAFIEFENLQEAEDAC 380
G +++ + ++L F +G + S V ++ F F+ +++ A++A
Sbjct: 348 GANLFIYNIPREFGDQELAAAFQSFGIVLSAKVFVDKATGVSKCFGFVSYDSQAAAQNAI 407
Query: 381 SAMNGTEMLGATLKVEI 431
MNG + G LKV++
Sbjct: 408 DMMNGRHLGGKKLKVQL 424
>At2g27330.1 68415.m03286 RNA recognition motif (RRM)-containing
protein
Length = 116
Score = 34.7 bits (76), Expect = 0.090
Identities = 20/66 (30%), Positives = 36/66 (54%), Gaps = 5/66 (7%)
Frame = +3
Query: 210 SGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAED 374
S + ++V G+ +E L + F +YG++ V V ++ P GFA++ F + +EAE
Sbjct: 18 SFSSTLFVKGISFSSTEETLTQAFSQYGQVLKVDVIMDKIRCRPKGFAYVTFSSKEEAEK 77
Query: 375 ACSAMN 392
A +N
Sbjct: 78 ALLELN 83
>At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit GB:CAA77136 from [Nicotiana plumbaginifolia]
Length = 589
Score = 34.7 bits (76), Expect = 0.090
Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 5/76 (6%)
Frame = +3
Query: 213 GGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVAL-----NPPGFAFIEFENLQEAEDA 377
G R++VGGL + + + +G L + N G+AF +++ + A
Sbjct: 373 GPDRIFVGGLPYYFTEVQIRELLESFGPLRGFNLVKDRETGNSKGYAFCVYQDPSVTDIA 432
Query: 378 CSAMNGTEMLGATLKV 425
C+A+NG +M TL V
Sbjct: 433 CAALNGIKMGDKTLTV 448
>At5g02530.1 68418.m00187 RNA and export factor-binding protein,
putative BcDNA.LD24793, Drosophila melanogaster,
EMBL:AF172637
Length = 292
Score = 34.3 bits (75), Expect = 0.12
Identities = 20/76 (26%), Positives = 35/76 (46%), Gaps = 4/76 (5%)
Frame = +3
Query: 216 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN----PPGFAFIEFENLQEAEDACS 383
GT++Y+ L G+ ED++ F + G L + + G A + F +A A
Sbjct: 107 GTKLYISNLDYGVSNEDIKELFSEVGDLKRYGIHYDRSGRSKGTAEVVFSRRGDALAAVK 166
Query: 384 AMNGTEMLGATLKVEI 431
N ++ G +K+EI
Sbjct: 167 RYNNVQLDGKLMKIEI 182
>At5g61960.1 68418.m07777 RNA recognition motif (RRM)-containing
protein Mei2-like protein, Arabidopsis thaliana,
EMBL:D86122
Length = 915
Score = 33.9 bits (74), Expect = 0.16
Identities = 17/65 (26%), Positives = 32/65 (49%)
Frame = +3
Query: 231 VGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTEMLG 410
V L I ++L R YG++ + ++ +IEF +++ A A +NG E+ G
Sbjct: 306 VNNLDSSISNQELNRLVKSYGEVKEIRRTMHDNSQIYIEFFDVRAAAAALGGLNGLEVAG 365
Query: 411 ATLKV 425
L++
Sbjct: 366 KKLQL 370
>At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 783
Score = 33.9 bits (74), Expect = 0.16
Identities = 21/74 (28%), Positives = 37/74 (50%), Gaps = 4/74 (5%)
Frame = +3
Query: 219 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNP----PGFAFIEFENLQEAEDACSA 386
T+++V + K +L + F +G++ S+ + G+AF+EF QEA +A A
Sbjct: 669 TKLHVKNIAFEATKRELRQLFSPFGQIKSMRLPKKNIGQYAGYAFVEFVTKQEALNAKKA 728
Query: 387 MNGTEMLGATLKVE 428
+ T G L +E
Sbjct: 729 LASTHFYGRHLVLE 742
>At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative similar to
29 kDa ribonucleoprotein chloroplast precursor
{Nicotiana sylvestris} SP|Q08935, SP|Q08937; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM) contains an AG-donor site at
intron.
Length = 258
Score = 33.9 bits (74), Expect = 0.16
Identities = 21/77 (27%), Positives = 33/77 (42%), Gaps = 5/77 (6%)
Frame = +3
Query: 219 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPP-----GFAFIEFENLQEAEDACS 383
T++Y G L + L + + V V N GFAF+ N+++
Sbjct: 85 TKLYFGNLPYNVDSATLAQIIQDFANPELVEVLYNRDTGQSRGFAFVTMSNVEDCNIIID 144
Query: 384 AMNGTEMLGATLKVEIS 434
++GTE LG LKV +
Sbjct: 145 NLDGTEYLGRALKVNFA 161
>At2g35410.1 68415.m04340 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
SP|P19684 33 kDa ribonucleoprotein, chloroplast
precursor {Nicotiana sylvestris}; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 308
Score = 33.5 bits (73), Expect = 0.21
Identities = 12/35 (34%), Positives = 23/35 (65%)
Frame = +3
Query: 330 GFAFIEFENLQEAEDACSAMNGTEMLGATLKVEIS 434
G+ F+ F +EAE+A + +NG E++G + ++ S
Sbjct: 237 GYGFVSFATREEAENAITKLNGKEIMGRPITLKFS 271
>At5g59950.3 68418.m07518 RNA and export factor-binding protein,
putative
Length = 242
Score = 33.1 bits (72), Expect = 0.27
Identities = 20/76 (26%), Positives = 36/76 (47%), Gaps = 4/76 (5%)
Frame = +3
Query: 216 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN----PPGFAFIEFENLQEAEDACS 383
GT++Y+ L G+ ED++ F + G+L V + G A + + +A A
Sbjct: 85 GTKLYISNLDYGVMNEDIKELFAEVGELKRYTVHFDRSGRSKGTAEVVYSRRGDALAAVK 144
Query: 384 AMNGTEMLGATLKVEI 431
N ++ G +K+EI
Sbjct: 145 KYNDVQLDGKPMKIEI 160
>At5g59950.2 68418.m07519 RNA and export factor-binding protein,
putative
Length = 178
Score = 33.1 bits (72), Expect = 0.27
Identities = 20/76 (26%), Positives = 36/76 (47%), Gaps = 4/76 (5%)
Frame = +3
Query: 216 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN----PPGFAFIEFENLQEAEDACS 383
GT++Y+ L G+ ED++ F + G+L V + G A + + +A A
Sbjct: 21 GTKLYISNLDYGVMNEDIKELFAEVGELKRYTVHFDRSGRSKGTAEVVYSRRGDALAAVK 80
Query: 384 AMNGTEMLGATLKVEI 431
N ++ G +K+EI
Sbjct: 81 KYNDVQLDGKPMKIEI 96
>At5g59950.1 68418.m07517 RNA and export factor-binding protein,
putative
Length = 244
Score = 33.1 bits (72), Expect = 0.27
Identities = 20/76 (26%), Positives = 36/76 (47%), Gaps = 4/76 (5%)
Frame = +3
Query: 216 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN----PPGFAFIEFENLQEAEDACS 383
GT++Y+ L G+ ED++ F + G+L V + G A + + +A A
Sbjct: 87 GTKLYISNLDYGVMNEDIKELFAEVGELKRYTVHFDRSGRSKGTAEVVYSRRGDALAAVK 146
Query: 384 AMNGTEMLGATLKVEI 431
N ++ G +K+EI
Sbjct: 147 KYNDVQLDGKPMKIEI 162
>At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 411
Score = 33.1 bits (72), Expect = 0.27
Identities = 20/74 (27%), Positives = 40/74 (54%), Gaps = 5/74 (6%)
Frame = +3
Query: 222 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWV----ALN-PPGFAFIEFENLQEAEDACSA 386
+++VGGL + E+ + F+ YG + V + A N P GF F+ F++ ++A D+
Sbjct: 111 KIFVGGLPPTLTDEEFRQYFEVYGPVTDVAIMYDQATNRPRGFGFVSFDS-EDAVDSVLH 169
Query: 387 MNGTEMLGATLKVE 428
++ G ++V+
Sbjct: 170 KTFHDLSGKQVEVK 183
>At4g13850.2 68417.m02146 glycine-rich RNA-binding protein (GRP2)
glycine-rich RNA binding protein 2 AtGRP2 [Arabidopsis
thaliana] GI:2826811
Length = 153
Score = 33.1 bits (72), Expect = 0.27
Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 5/74 (6%)
Frame = +3
Query: 219 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPP-----GFAFIEFENLQEAEDACS 383
T++++GGL G L F +G + V ++ GF F+ F + A A S
Sbjct: 35 TKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAIS 94
Query: 384 AMNGTEMLGATLKV 425
M+G E+ G ++V
Sbjct: 95 EMDGKELNGRHIRV 108
>At4g13850.1 68417.m02145 glycine-rich RNA-binding protein (GRP2)
glycine-rich RNA binding protein 2 AtGRP2 [Arabidopsis
thaliana] GI:2826811
Length = 158
Score = 33.1 bits (72), Expect = 0.27
Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 5/74 (6%)
Frame = +3
Query: 219 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPP-----GFAFIEFENLQEAEDACS 383
T++++GGL G L F +G + V ++ GF F+ F + A A S
Sbjct: 35 TKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAIS 94
Query: 384 AMNGTEMLGATLKV 425
M+G E+ G ++V
Sbjct: 95 EMDGKELNGRHIRV 108
>At1g07360.1 68414.m00785 zinc finger (CCCH-type) family protein /
RNA recognition motif (RRM)-containing protein similar
to SP|O59800 Cell cycle control protein cwf5
{Schizosaccharomyces pombe}, RNA Binding Protein 47
[Nicotiana plumbaginifolia] GI:9663769; contains Pfam
profile: PF00076 RNA recognition motif (aka RRM, RBD, or
RNP domain)
Length = 481
Score = 33.1 bits (72), Expect = 0.27
Identities = 19/68 (27%), Positives = 38/68 (55%), Gaps = 1/68 (1%)
Frame = +3
Query: 225 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTEM 404
+YVGGL I ++D+ +F +G++ S+ + L AF+ + + + AE A ++ +
Sbjct: 230 LYVGGLNSRILEQDIRDQFYAHGEIESIRI-LADKACAFVTYTSREGAEKAAQELSNRLV 288
Query: 405 L-GATLKV 425
+ G LK+
Sbjct: 289 INGQRLKL 296
>At4g09040.1 68417.m01491 RNA recognition motif (RRM)-containing
protein low similarity to enhancer binding protein-1;
EBP1 [Entamoeba histolytica] GI:8163877, SP|P19682 28
kDa ribonucleoprotein, chloroplast precursor (28RNP)
{Nicotiana sylvestris}; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 304
Score = 32.7 bits (71), Expect = 0.36
Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 4/60 (6%)
Frame = +3
Query: 261 EDLEREFDKYGKLNSVWVALNPP----GFAFIEFENLQEAEDACSAMNGTEMLGATLKVE 428
ED+ F+KYG + + ++++ G FIE + +EA A ++ E G LKV+
Sbjct: 108 EDIRSLFEKYGSVIDIEMSMHKKERNRGLVFIEMASPEEAATALKSLESCEYEGRRLKVD 167
>At3g50670.1 68416.m05542 U1 small nuclear ribonucleoprotein 70
(U1-70k)
Length = 427
Score = 32.7 bits (71), Expect = 0.36
Identities = 18/74 (24%), Positives = 39/74 (52%), Gaps = 5/74 (6%)
Frame = +3
Query: 225 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACSAM 389
++V L + ++REF+ YG + V + + P G+AFIE+ + ++ + A
Sbjct: 140 LFVSRLNYESSESKIKREFESYGPIKRVHLVTDQLTNKPKGYAFIEYMHTRDMKAAYKQA 199
Query: 390 NGTEMLGATLKVEI 431
+G ++ G + V++
Sbjct: 200 DGQKIDGRRVLVDV 213
>At3g23900.1 68416.m03003 RNA recognition motif (RRM)-containing
protein
Length = 987
Score = 32.7 bits (71), Expect = 0.36
Identities = 22/68 (32%), Positives = 33/68 (48%)
Frame = +3
Query: 231 VGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTEMLG 410
V L + E L + F G + + + A+IE+ N +EA A A+N TE+ G
Sbjct: 355 VSNLSPSLTTEQLRQLFSFCGTVVDCSIT-DSKHIAYIEYSNSEEAT-AALALNNTEVFG 412
Query: 411 ATLKVEIS 434
L VEI+
Sbjct: 413 RALNVEIA 420
>At2g47310.1 68415.m05906 flowering time control protein-related /
FCA gamma-related
Length = 512
Score = 32.7 bits (71), Expect = 0.36
Identities = 18/62 (29%), Positives = 34/62 (54%), Gaps = 4/62 (6%)
Frame = +3
Query: 222 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNP----PGFAFIEFENLQEAEDACSAM 389
++YV L + K ++ F +YG + +++AL+ G+AF++F + A A A+
Sbjct: 208 KLYVRCLNKQTTKMEVNEVFSRYGIIEDIYMALDDMKICRGYAFVQFSCKEMALAAIKAL 267
Query: 390 NG 395
NG
Sbjct: 268 NG 269
>At5g37720.1 68418.m04541 RNA and export factor-binding protein,
putative transcriptional coactivator ALY, Mus musculus,
EMBL:MMU89876
Length = 288
Score = 32.3 bits (70), Expect = 0.48
Identities = 19/76 (25%), Positives = 36/76 (47%), Gaps = 4/76 (5%)
Frame = +3
Query: 216 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN----PPGFAFIEFENLQEAEDACS 383
GTR++V L +G+ ED+ F + G++ + + P G A + + +A A
Sbjct: 92 GTRLHVTNLDQGVTNEDIRELFSEIGEVERYAIHYDKNGRPSGTAEVVYPRRSDAFQALK 151
Query: 384 AMNGTEMLGATLKVEI 431
N + G +++EI
Sbjct: 152 KYNNVLLDGRPMRLEI 167
>At5g16260.1 68418.m01899 RNA recognition motif (RRM)-containing
protein similar to Tat-SF1 - Homo sapiens, GI:1667611;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 519
Score = 32.3 bits (70), Expect = 0.48
Identities = 16/47 (34%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Frame = +3
Query: 258 KEDLEREFDKYGKLNSVWVALN-PPGFAFIEFENLQEAEDACSAMNG 395
+ED++ E K+G +SV V + P G + F++ ++A+ AMNG
Sbjct: 430 EEDVKEESLKHGPFDSVKVCEHHPQGVVLVRFKDRRDAQKCIEAMNG 476
>At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing
protein similar to SP|P48809 Heterogeneous nuclear
ribonucleoprotein 27C (hnRNP 48) {Drosophila
melanogaster}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM);
non-consensus TA donor splice site at exon 6
Length = 379
Score = 32.3 bits (70), Expect = 0.48
Identities = 18/71 (25%), Positives = 32/71 (45%), Gaps = 5/71 (7%)
Frame = +3
Query: 219 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWV-----ALNPPGFAFIEFENLQEAEDACS 383
TR++V + + + D F++YG++ +++ + G FI F + ED
Sbjct: 91 TRIFVARIPSSVSESDFRSHFERYGEITDLYMPKDYNSKQHRGIGFITFSSADSVED--- 147
Query: 384 AMNGTEMLGAT 416
M T LG T
Sbjct: 148 LMEDTHDLGGT 158
Score = 29.1 bits (62), Expect = 4.5
Identities = 13/50 (26%), Positives = 25/50 (50%), Gaps = 5/50 (10%)
Frame = +3
Query: 216 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPP-----GFAFIEF 350
G +++VG L + +DL F ++G + ++ +P GF F+ F
Sbjct: 239 GNKIFVGRLPQEASVDDLRDYFGRFGHIQDAYIPKDPKRSGHRGFGFVTF 288
>At3g54770.1 68416.m06060 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 261
Score = 32.3 bits (70), Expect = 0.48
Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 5/59 (8%)
Frame = +3
Query: 219 TRVYVGGLVEGIKKEDLEREFDKYGK-LNSVWVA----LNPPGFAFIEFENLQEAEDAC 380
T+V+VGGL KE + F KYG L +V ++ G+ F+ F++ + A AC
Sbjct: 17 TKVFVGGLAWDTHKEAMYDHFIKYGDILEAVIISDKLTRRSKGYGFVTFKDAKAATRAC 75
>At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 1003
Score = 32.3 bits (70), Expect = 0.48
Identities = 18/71 (25%), Positives = 38/71 (53%), Gaps = 5/71 (7%)
Frame = +3
Query: 225 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACSAM 389
+++ L + KE++++ F +G++ S+ + L+ P G AF++F+ + A SA
Sbjct: 563 LFIRNLPFDVTKEEVKQRFTVFGEVESLSLVLHKVTKRPEGTAFVKFKTADASVAAISAA 622
Query: 390 NGTEMLGATLK 422
+ +G LK
Sbjct: 623 DTASGVGVLLK 633
Score = 30.3 bits (65), Expect = 1.9
Identities = 20/73 (27%), Positives = 32/73 (43%), Gaps = 5/73 (6%)
Frame = +3
Query: 225 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPP-----GFAFIEFENLQEAEDACSAM 389
V V GL I LE F + G + ++ N GFAF++F ++ A
Sbjct: 22 VCVSGLPYSITNAQLEEAFSEVGPVRRCFLVTNKGSDEHRGFAFVKFALQEDVNRAIELK 81
Query: 390 NGTEMLGATLKVE 428
NG+ + G + V+
Sbjct: 82 NGSTVGGRRITVK 94
>At1g66260.1 68414.m07522 RNA and export factor-binding protein,
putative similar to GI:7159943 from [Mus musculus] (RNA
6 (4), 638-650 (2000))
Length = 295
Score = 32.3 bits (70), Expect = 0.48
Identities = 20/76 (26%), Positives = 35/76 (46%), Gaps = 4/76 (5%)
Frame = +3
Query: 216 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN----PPGFAFIEFENLQEAEDACS 383
GT VY+ L +G+ ED+ + + G+L + + P G A + + +A A
Sbjct: 106 GTTVYITNLDQGVTNEDIRELYAEIGELKRYAIHYDKNGRPSGSAEVVYMRRSDAIQAMR 165
Query: 384 AMNGTEMLGATLKVEI 431
N + G +K+EI
Sbjct: 166 KYNNVLLDGRPMKLEI 181
>At5g53720.1 68418.m06676 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 100
Score = 31.9 bits (69), Expect = 0.63
Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 5/65 (7%)
Frame = +3
Query: 219 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACS 383
T++YV GL + E L F+++G++ V + GF F+ F ++ A AC
Sbjct: 9 TKIYVAGLPWITRTEGLISYFERFGEIVYAKVVCDGATQRSKGFGFVTFREVESATRACE 68
Query: 384 AMNGT 398
N T
Sbjct: 69 NPNHT 73
>At5g12190.1 68418.m01430 RNA recognition motif (RRM)-containing
protein similar to SP|P52298 20 kDa nuclear cap binding
protein (NCBP 20 kDa subunit) (CBP20) (NCBP interacting
protein 1) (NIP1) {Homo sapiens}; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 124
Score = 31.9 bits (69), Expect = 0.63
Identities = 16/59 (27%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
Frame = +3
Query: 225 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN--PPGFAFIEFENLQEAEDACSAMNG 395
+YV L I E++ F KYG + + + + G AF+ +E++ +A++A ++G
Sbjct: 21 LYVRNLPFNITSEEMYDIFGKYGAIRQIRIGCDKATKGTAFVVYEDIYDAKNAVDHLSG 79
>At2g29580.1 68415.m03592 zinc finger (CCCH-type) family protein /
RNA recognition motif (RRM)-containing protein similar
to SP|O59800 Cell cycle control protein cwf5
{Schizosaccharomyces pombe}; contains Pfam profile:
PF00076 RNA recognition motif (aka RRM, RBD, or RNP
domain)
Length = 483
Score = 31.9 bits (69), Expect = 0.63
Identities = 19/68 (27%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
Frame = +3
Query: 225 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAM-NGTE 401
+YVGGL + ++D+ +F +G++ S+ + L AF+ + + AE A + N
Sbjct: 230 LYVGGLNSRVLEQDIRDQFYAHGEIESIRI-LAEKACAFVTYTTREGAEKAAEELSNRLV 288
Query: 402 MLGATLKV 425
+ G LK+
Sbjct: 289 VNGQRLKL 296
>At1g58470.1 68414.m06651 RNA-binding protein (XF41) identical to
RNA binding protein GI:18181938 from (Arabidopsis
thaliana); contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
domain 15450911 gb AY054536.1
Length = 360
Score = 31.9 bits (69), Expect = 0.63
Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 5/50 (10%)
Frame = +3
Query: 222 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVAL-----NPPGFAFIEFEN 356
+++VGG+ + +E L++ F +YG + VA P GF F+ F N
Sbjct: 7 KLFVGGIAKETSEEALKQYFSRYGAVLEAVVAKEKVTGKPRGFGFVRFAN 56
>At1g16610.2 68414.m01990 arginine/serine-rich protein, putative
(SR45) similar to arginine/serine-rich protein
GI:6601502 from [Arabidopsis thaliana]
Length = 407
Score = 31.5 bits (68), Expect = 0.84
Identities = 18/71 (25%), Positives = 37/71 (52%), Gaps = 5/71 (7%)
Frame = +3
Query: 225 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACSAM 389
++V L + + L+ F +G++ V +A++ P G ++EF+ +AE A M
Sbjct: 100 LHVDSLSRNVNEAHLKEIFGNFGEVIHVEIAMDRAVNLPRGHGYVEFKARADAEKAQLYM 159
Query: 390 NGTEMLGATLK 422
+G ++ G +K
Sbjct: 160 DGAQIDGKVVK 170
>At1g16610.1 68414.m01989 arginine/serine-rich protein, putative
(SR45) similar to arginine/serine-rich protein
GI:6601502 from [Arabidopsis thaliana]
Length = 414
Score = 31.5 bits (68), Expect = 0.84
Identities = 18/71 (25%), Positives = 37/71 (52%), Gaps = 5/71 (7%)
Frame = +3
Query: 225 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACSAM 389
++V L + + L+ F +G++ V +A++ P G ++EF+ +AE A M
Sbjct: 100 LHVDSLSRNVNEAHLKEIFGNFGEVIHVEIAMDRAVNLPRGHGYVEFKARADAEKAQLYM 159
Query: 390 NGTEMLGATLK 422
+G ++ G +K
Sbjct: 160 DGAQIDGKVVK 170
>At5g43960.2 68418.m05378 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF02136: Nuclear transport factor
2 (NTF2) domain, PF00076: RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain)
Length = 391
Score = 31.1 bits (67), Expect = 1.1
Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Frame = +3
Query: 225 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPG------FAFIEFENLQEAEDACSA 386
VYV L I ++E EF +G + V L +AF+EFE++ E+A A
Sbjct: 259 VYVRNLPSDISASEIEEEFKNFGTIKPDGVFLRTRKDVMGVCYAFVEFEDMTSVENAIKA 318
>At5g43960.1 68418.m05379 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF02136: Nuclear transport factor
2 (NTF2) domain, PF00076: RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain)
Length = 450
Score = 31.1 bits (67), Expect = 1.1
Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Frame = +3
Query: 225 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPG------FAFIEFENLQEAEDACSA 386
VYV L I ++E EF +G + V L +AF+EFE++ E+A A
Sbjct: 318 VYVRNLPSDISASEIEEEFKNFGTIKPDGVFLRTRKDVMGVCYAFVEFEDMTSVENAIKA 377
>At3g49390.1 68416.m05399 RNA-binding protein, putative RNA-binding
protein RBP37, Arabidopsis thaliana, PIR:T04196
Length = 353
Score = 30.7 bits (66), Expect = 1.5
Identities = 24/70 (34%), Positives = 36/70 (51%), Gaps = 3/70 (4%)
Frame = +3
Query: 225 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPG---FAFIEFENLQEAEDACSAMNG 395
VYV + + + +E+L F G++ V +P FAFIEF N +E A +M+G
Sbjct: 171 VYVSDIDQQVTEENLAGVFINCGQVVDCRVCGDPNSVLRFAFIEFTN-EEGARAALSMSG 229
Query: 396 TEMLGATLKV 425
T + LKV
Sbjct: 230 TVLGFYPLKV 239
>At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 404
Score = 30.7 bits (66), Expect = 1.5
Identities = 12/50 (24%), Positives = 27/50 (54%), Gaps = 5/50 (10%)
Frame = +3
Query: 222 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFEN 356
+++VGGL + ++ F+ YG ++ + ++ P GF F+ F++
Sbjct: 111 KIFVGGLPPALTSDEFRAYFETYGPVSDAVIMIDQTTQRPRGFGFVSFDS 160
>At1g06960.2 68414.m00741 small nuclear ribonucleoprotein U2B,
putative / spliceosomal protein, putative non-consensus
splice donor GC at exon 4; similar to spliceosomal
protein (U2B) GI:169588 from [Solanum tuberosum]
Length = 228
Score = 30.7 bits (66), Expect = 1.5
Identities = 22/75 (29%), Positives = 38/75 (50%), Gaps = 7/75 (9%)
Frame = +3
Query: 225 VYVGGLVEGIKKEDLERE----FDKYGKLNSVWVALNPP---GFAFIEFENLQEAEDACS 383
+Y+ + E IKKE+L+R F ++G+L V VAL P G A++ F + A +A
Sbjct: 12 IYIKHINEKIKKEELKRSLYCLFSQFGRLLDV-VALKTPKLRGQAWVVFTEVTAASNAVR 70
Query: 384 AMNGTEMLGATLKVE 428
M ++++
Sbjct: 71 QMQNFPFYDKPMRIQ 85
>At1g06960.1 68414.m00740 small nuclear ribonucleoprotein U2B,
putative / spliceosomal protein, putative non-consensus
splice donor GC at exon 4; similar to spliceosomal
protein (U2B) GI:169588 from [Solanum tuberosum]
Length = 229
Score = 30.7 bits (66), Expect = 1.5
Identities = 22/75 (29%), Positives = 38/75 (50%), Gaps = 7/75 (9%)
Frame = +3
Query: 225 VYVGGLVEGIKKEDLERE----FDKYGKLNSVWVALNPP---GFAFIEFENLQEAEDACS 383
+Y+ + E IKKE+L+R F ++G+L V VAL P G A++ F + A +A
Sbjct: 12 IYIKHINEKIKKEELKRSLYCLFSQFGRLLDV-VALKTPKLRGQAWVVFTEVTAASNAVR 70
Query: 384 AMNGTEMLGATLKVE 428
M ++++
Sbjct: 71 QMQNFPFYDKPMRIQ 85
>At1g01080.1 68414.m00010 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
33 KDA RIBONUCLEOPROTEIN GB:P19684 from [Nicotiana
sylvestris]
Length = 293
Score = 30.7 bits (66), Expect = 1.5
Identities = 23/73 (31%), Positives = 35/73 (47%), Gaps = 5/73 (6%)
Frame = +3
Query: 222 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPG-----FAFIEFENLQEAEDACSA 386
+VYVG L + + L F K+G + S V + FAF+ F + +E DA +
Sbjct: 213 KVYVGNLPWFTQPDGLRNHFSKFGTIVSTRVLHDRKTGRNRVFAFLSFTSGEE-RDAALS 271
Query: 387 MNGTEMLGATLKV 425
NGT+ G + V
Sbjct: 272 FNGTQYEGRRIIV 284
>At5g06000.1 68418.m00665 eukaryotic translation initiation factor
3G, putative / eIF3g, putative similar to eukaryotic
translation initiation factor 3g [Arabidopsis thaliana]
GI:12407751; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 276
Score = 30.3 bits (65), Expect = 1.9
Identities = 22/75 (29%), Positives = 35/75 (46%), Gaps = 5/75 (6%)
Frame = +3
Query: 225 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPP-----GFAFIEFENLQEAEDACSAM 389
V V L E + DL F +G + VA++ GF F+ F + ++A+ A + +
Sbjct: 176 VRVTNLSEDTRGPDLMELFRPFGAVTRCHVAIDQKTSMSRGFGFVSFVSREDAQRAINKL 235
Query: 390 NGTEMLGATLKVEIS 434
NG L+VE S
Sbjct: 236 NGYGYDNLILRVEWS 250
>At4g32720.1 68417.m04657 RNA recognition motif (RRM)-containing
protein RNA-binding protein LAH1, Saccharomyces
cerevisiae, PIR2:B48600; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 433
Score = 30.3 bits (65), Expect = 1.9
Identities = 16/47 (34%), Positives = 28/47 (59%), Gaps = 6/47 (12%)
Frame = +3
Query: 252 IKKEDLEREFDKYGKLNSVWVALNP------PGFAFIEFENLQEAED 374
+K+ED+E F +YGK+NSV + + G A +EF ++A++
Sbjct: 127 VKREDVESFFSQYGKVNSVRMPRHVAESRIFSGVALVEFPTEEDAQN 173
>At3g20930.1 68416.m02645 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif
Length = 374
Score = 30.3 bits (65), Expect = 1.9
Identities = 18/76 (23%), Positives = 39/76 (51%), Gaps = 5/76 (6%)
Frame = +3
Query: 222 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNP-----PGFAFIEFENLQEAEDACSA 386
++++ GL ++ L F+ +G+L V + ++ G+AF+E+ + A A
Sbjct: 283 KLFITGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFLEYTTEEAAGTALKE 342
Query: 387 MNGTEMLGATLKVEIS 434
MNG + G + V+++
Sbjct: 343 MNGKIINGWMIVVDVA 358
>At3g14100.1 68416.m01782 oligouridylate-binding protein, putative
similar to GB:CAB75429 (GI:6996560) from [Nicotiana
plumbaginifolia], contains Pfam profiles: PF00076 RNA
recognition motif (3 copies)
Length = 427
Score = 30.3 bits (65), Expect = 1.9
Identities = 18/68 (26%), Positives = 30/68 (44%), Gaps = 5/68 (7%)
Frame = +3
Query: 207 SSGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPP-----GFAFIEFENLQEAE 371
+S ++VG L + L + F + + V + GF F+ F N Q+A+
Sbjct: 140 TSSHFNIFVGDLSPEVTDATLYQSFSVFSSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQ 199
Query: 372 DACSAMNG 395
A + MNG
Sbjct: 200 TAINEMNG 207
>At1g09230.1 68414.m01030 RNA recognition motif (RRM)-containing
protein contains INTERPRO:IPR000504 RNA-binding region
RNP-1 (RNA recognition motif) domain
Length = 442
Score = 30.3 bits (65), Expect = 1.9
Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 2/73 (2%)
Frame = +3
Query: 216 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPP--GFAFIEFENLQEAEDACSAM 389
G + V L +GI + + R F +YG ++V AF++F+N A A +
Sbjct: 27 GVTLLVRHLPDGIPHDIVSRLFSQYGA-SAVRPCSGGKLRNAAFVDFKNEAFASQAHRQL 85
Query: 390 NGTEMLGATLKVE 428
NG LG L+V+
Sbjct: 86 NGLRFLGKVLQVQ 98
>At5g03580.1 68418.m00316 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
[Triticum aestivum] GI:1737492; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 101
Score = 29.9 bits (64), Expect = 2.6
Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 4/63 (6%)
Frame = +3
Query: 219 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN----PPGFAFIEFENLQEAEDACSA 386
T +Y+ L + +E L F +GK+ +A + GFAFIEFE+ A A
Sbjct: 17 TSLYIANLDAQVSEEMLFLMFSDFGKVIRSVLAKDFRGESRGFAFIEFESADSAGRAMLH 76
Query: 387 MNG 395
M+G
Sbjct: 77 MDG 79
>At3g61130.1 68416.m06841 glycosyl transferase family 8 protein
contains Pfam profile: PF01501 glycosyl transferase
family 8
Length = 673
Score = 29.9 bits (64), Expect = 2.6
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = +3
Query: 288 YGKLNSVWVALNPPGFAFIEFENLQE 365
+G +N +W LNPPG A I EN+ E
Sbjct: 405 FGAMN-MWFLLNPPGKATIHVENVDE 429
>At2g30260.1 68415.m03684 small nuclear ribonucleoprotein U2B,
putative / spliceosomal protein, putative similar to
spliceosomal protein [Solanum tuberosum] GI:169589
Length = 232
Score = 29.9 bits (64), Expect = 2.6
Identities = 22/62 (35%), Positives = 33/62 (53%), Gaps = 7/62 (11%)
Frame = +3
Query: 225 VYVGGLVEGIKKEDLERE----FDKYGKLNSVWVALNPP---GFAFIEFENLQEAEDACS 383
+Y+ L E IKKE+L+R F ++G++ V VAL P G A++ F + A A
Sbjct: 12 IYIQNLNERIKKEELKRSLYCLFSQFGRILDV-VALKTPKLRGQAWVTFSEVTAAGHAVR 70
Query: 384 AM 389
M
Sbjct: 71 QM 72
>At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative similar
to SP|Q15427 Splicing factor 3B subunit 4 (Spliceosome
associated protein 49) (SAP 49) (SF3b50) (Pre-mRNA
splicing factor SF3b 49 kDa subunit) {Homo sapiens};
contains Pfam profile PF00076: RNA recognition motif.
(a.k.a. RRM, RBD, or RNP domain)
Length = 363
Score = 29.9 bits (64), Expect = 2.6
Identities = 20/72 (27%), Positives = 38/72 (52%), Gaps = 5/72 (6%)
Frame = +3
Query: 225 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACSAM 389
VYVGGL + +E L F + G + +V+V + + FIE+ + ++A+ A +
Sbjct: 27 VYVGGLDAQLSEELLWELFVQAGPVVNVYVPKDRVTNLHQNYGFIEYRSEEDADYAIKVL 86
Query: 390 NGTEMLGATLKV 425
N ++ G ++V
Sbjct: 87 NMIKLHGKPIRV 98
>At1g22330.1 68414.m02793 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 146
Score = 29.9 bits (64), Expect = 2.6
Identities = 16/63 (25%), Positives = 31/63 (49%), Gaps = 5/63 (7%)
Frame = +3
Query: 219 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACS 383
T+V+VGGL +++ R FD++G++ + + G+ F+ F + A A +
Sbjct: 17 TKVFVGGLAWETPTDEMRRYFDQFGEILEAVIITDKATGKSKGYGFVTFRDSDSATRAVA 76
Query: 384 AMN 392
N
Sbjct: 77 DPN 79
>At3g14450.1 68416.m01831 RNA-binding protein, putative contains
Pfam profile: PF00076 RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain) (2 copies)
Length = 327
Score = 29.5 bits (63), Expect = 3.4
Identities = 22/65 (33%), Positives = 34/65 (52%), Gaps = 3/65 (4%)
Frame = +3
Query: 225 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPG---FAFIEFENLQEAEDACSAMNG 395
VYV + + + +E L F G++ + +P FAF+EF + Q A +A S + G
Sbjct: 143 VYVSDIDQSVTEEGLAGLFSNCGQVVDCRICGDPHSVLRFAFVEFADDQGAHEALS-LGG 201
Query: 396 TEMLG 410
T MLG
Sbjct: 202 T-MLG 205
>At1g54080.2 68414.m06163 oligouridylate-binding protein, putative
similar to oligouridylate binding protein GI:6996560
from [Nicotiana plumbaginifolia]
Length = 430
Score = 29.5 bits (63), Expect = 3.4
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +3
Query: 330 GFAFIEFENLQEAEDACSAMNG 395
GF F+ F N Q+A+ A + MNG
Sbjct: 194 GFGFVSFRNQQDAQTAINEMNG 215
>At1g54080.1 68414.m06162 oligouridylate-binding protein, putative
similar to oligouridylate binding protein GI:6996560
from [Nicotiana plumbaginifolia]
Length = 426
Score = 29.5 bits (63), Expect = 3.4
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +3
Query: 330 GFAFIEFENLQEAEDACSAMNG 395
GF F+ F N Q+A+ A + MNG
Sbjct: 190 GFGFVSFRNQQDAQTAINEMNG 211
>At5g46840.1 68418.m05771 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 501
Score = 29.1 bits (62), Expect = 4.5
Identities = 13/34 (38%), Positives = 22/34 (64%)
Frame = +3
Query: 225 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNP 326
V+VG L +KK+ + +EF K+G++ SV + P
Sbjct: 173 VFVGNLPLKVKKKVILKEFSKFGEVESVRIRSVP 206
>At3g53500.1 68416.m05906 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 243
Score = 29.1 bits (62), Expect = 4.5
Identities = 12/34 (35%), Positives = 23/34 (67%)
Frame = +3
Query: 333 FAFIEFENLQEAEDACSAMNGTEMLGATLKVEIS 434
+AF+EF + ++A+DA ++G + G+ + VE S
Sbjct: 5 YAFVEFSDPRDADDARYYLDGRDFDGSRITVEAS 38
>At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 358
Score = 29.1 bits (62), Expect = 4.5
Identities = 16/74 (21%), Positives = 38/74 (51%), Gaps = 5/74 (6%)
Frame = +3
Query: 222 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACSA 386
+++VGG+ + +++L+ F KYG + V + GF F+ F++ + ++ S
Sbjct: 110 KIFVGGIPSTVTEDELKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFDSEEVVDELLSK 169
Query: 387 MNGTEMLGATLKVE 428
N +M ++++
Sbjct: 170 GNMIDMADTQVEIK 183
>At2g37340.3 68415.m04580 splicing factor RSZ33 (RSZ33) nearly
identical to splicing factor RSZ33 [Arabidopsis
thaliana] GI:9843663; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00098: Zinc knuckle
Length = 249
Score = 29.1 bits (62), Expect = 4.5
Identities = 12/34 (35%), Positives = 23/34 (67%)
Frame = +3
Query: 333 FAFIEFENLQEAEDACSAMNGTEMLGATLKVEIS 434
+AF+EF + ++A+DA ++G + G+ + VE S
Sbjct: 5 YAFVEFGDPRDADDARHYLDGRDFDGSRITVEFS 38
>At5g54580.1 68418.m06794 RNA recognition motif (RRM)-containing
protein low similarity to RNA-binding protein RGP-3
[Nicotiana sylvestris] GI:1009363; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 156
Score = 28.7 bits (61), Expect = 5.9
Identities = 17/75 (22%), Positives = 34/75 (45%), Gaps = 5/75 (6%)
Frame = +3
Query: 219 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACS 383
T ++V GL + E L F ++G++ V + GF F+ + L+++ +
Sbjct: 56 TNLFVSGLSKRTTSEGLRTAFAQFGEVADAKVVTDRVSGYSKGFGFVRYATLEDSAKGIA 115
Query: 384 AMNGTEMLGATLKVE 428
M+G + G + E
Sbjct: 116 GMDGKFLDGWVIFAE 130
>At5g03480.1 68418.m00304 expressed protein ; expression supported
by MPSS
Length = 321
Score = 28.7 bits (61), Expect = 5.9
Identities = 19/61 (31%), Positives = 33/61 (54%), Gaps = 5/61 (8%)
Frame = +3
Query: 267 LEREFDKYGKLNSVWVALNPP-----GFAFIEFENLQEAEDACSAMNGTEMLGATLKVEI 431
LE+ FD G++ V+V + AF+ E + AED ++GT+++G T+ V+
Sbjct: 133 LEKHFDSCGEIRHVYVPTDYERGVLKSVAFLRIEG-EGAEDKALQLSGTDVVGWTVIVKP 191
Query: 432 S 434
S
Sbjct: 192 S 192
>At3g27700.2 68416.m03459 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif
Length = 908
Score = 28.7 bits (61), Expect = 5.9
Identities = 14/47 (29%), Positives = 26/47 (55%)
Frame = +3
Query: 246 EGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSA 386
E +++ + F K+GK+ + + +N AF++F +EAE A A
Sbjct: 448 ESNRRDLILAHFQKFGKVIDIHIPVNSER-AFVQFSKREEAESALRA 493
>At3g27700.1 68416.m03458 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif
Length = 908
Score = 28.7 bits (61), Expect = 5.9
Identities = 14/47 (29%), Positives = 26/47 (55%)
Frame = +3
Query: 246 EGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSA 386
E +++ + F K+GK+ + + +N AF++F +EAE A A
Sbjct: 448 ESNRRDLILAHFQKFGKVIDIHIPVNSER-AFVQFSKREEAESALRA 493
>At3g26120.1 68416.m03257 RNA-binding protein, putative similar to
GB:AAC39463 from [Zea mays], PF00076 RNA recognition
motif (2 copies)
Length = 615
Score = 28.7 bits (61), Expect = 5.9
Identities = 16/56 (28%), Positives = 27/56 (48%)
Frame = +3
Query: 267 LEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTEMLGATLKVEIS 434
L + F YG + + F+EF ++++A A MNG E+ G + +E S
Sbjct: 229 LRQIFQVYGPIKELRETPYKKHQRFVEFYDVRDAARAFDRMNGKEIGGKQVVIEFS 284
>At1g43190.1 68414.m04977 polypyrimidine tract-binding protein,
putative / heterogeneous nuclear ribonucleoprotein,
putative similar to Polypyrimidine tract-binding protein
1 (PTB) (Heterogeneous nuclear ribonucleoprotein I)
(hnRNP I) from {Rattus norvegicus} SP|Q00438, {Homo
sapiens} SP|P26599, [Homo sapiens] GI:35770; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 432
Score = 28.7 bits (61), Expect = 5.9
Identities = 16/63 (25%), Positives = 29/63 (46%)
Frame = +3
Query: 246 EGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTEMLGATLKV 425
+ I ++ L F YG + + + N P A ++ + +AE A + G + G L+V
Sbjct: 255 DSIDEDKLFNLFSLYGNIVRIKLLRNKPDHALVQMGDGFQAELAVHFLKGAMLFGKRLEV 314
Query: 426 EIS 434
S
Sbjct: 315 NFS 317
>At5g27640.1 68418.m03311 eukaryotic translation initiation factor 3
subunit 9 / eIF-3 eta / eIF3b (TIF3B1) nearly identical
to SP|Q9C5Z1 Eukaryotic translation initiation factor 3
subunit 9 (eIF-3 eta) (eIF3 p110) (eIF3b) {Arabidopsis
thaliana}
Length = 712
Score = 28.3 bits (60), Expect = 7.8
Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 5/42 (11%)
Frame = +3
Query: 294 KLNSVWVALNPP-----GFAFIEFENLQEAEDACSAMNGTEM 404
K N +W+ ++P G+ FIEF QEA++A +G ++
Sbjct: 89 KENGLWMPVDPDTKMTLGYCFIEFNTPQEAQNAKEKSHGYKL 130
>At3g46020.1 68416.m04979 RNA-binding protein, putative similar to
Cold-inducible RNA-binding protein (Glycine-rich
RNA-binding protein CIRP) from {Homo sapiens} SP|Q14011,
{Rattus norvegicus} SP|Q61413,{Xenopus laevis};
SP|O93235; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 102
Score = 28.3 bits (60), Expect = 7.8
Identities = 12/37 (32%), Positives = 22/37 (59%)
Frame = +3
Query: 324 PPGFAFIEFENLQEAEDACSAMNGTEMLGATLKVEIS 434
P GF FI F++ +A A +++G + G + VE++
Sbjct: 47 PKGFGFITFDSEDDARKALKSLDGKIVDGRLIFVEVA 83
>At2g33440.1 68415.m04099 splicing factor family protein similar to
Splicing factor U2AF 65 kDa subunit (U2 snRNP auxiliary
factor large subunit) {Homo sapiens} SP|P26368, {Mus
musculus} SP|P26369; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 247
Score = 28.3 bits (60), Expect = 7.8
Identities = 17/75 (22%), Positives = 35/75 (46%), Gaps = 3/75 (4%)
Frame = +3
Query: 204 MSSGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSV-WVALNPPG--FAFIEFENLQEAED 374
+ ++++GG + I E L +G L + +V+ N AF+E+ +
Sbjct: 35 VEDSSNKIFIGGFSKAISSEMLMEIVSVFGPLKAYRFVSNNDLNQRCAFLEYTDGSVTLK 94
Query: 375 ACSAMNGTEMLGATL 419
AC+ +NG + G+ +
Sbjct: 95 ACAGLNGMRLGGSVI 109
>At1g79880.3 68414.m09332 La domain-containing protein contains Pfam
profile PF05383: La domain; similar to putative protein
GB:CAA18589 [Arabidopsis thaliana]
Length = 357
Score = 28.3 bits (60), Expect = 7.8
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 6/47 (12%)
Frame = +3
Query: 252 IKKEDLEREFDKYGKLNSVWVALNPP------GFAFIEFENLQEAED 374
IK ED+ F +Y K+NSV + N G A +EF + Q+ +D
Sbjct: 72 IKMEDVSSFFSQYAKVNSVRLPPNIADKRRFCGTALVEFSSEQDTQD 118
>At1g79880.2 68414.m09331 La domain-containing protein contains Pfam
profile PF05383: La domain; similar to putative protein
GB:CAA18589 [Arabidopsis thaliana]
Length = 345
Score = 28.3 bits (60), Expect = 7.8
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 6/47 (12%)
Frame = +3
Query: 252 IKKEDLEREFDKYGKLNSVWVALNPP------GFAFIEFENLQEAED 374
IK ED+ F +Y K+NSV + N G A +EF + Q+ +D
Sbjct: 72 IKMEDVSSFFSQYAKVNSVRLPPNIADKRRFCGTALVEFSSEQDTQD 118
>At1g79880.1 68414.m09333 La domain-containing protein contains Pfam
profile PF05383: La domain; similar to putative protein
GB:CAA18589 [Arabidopsis thaliana]
Length = 399
Score = 28.3 bits (60), Expect = 7.8
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 6/47 (12%)
Frame = +3
Query: 252 IKKEDLEREFDKYGKLNSVWVALNPP------GFAFIEFENLQEAED 374
IK ED+ F +Y K+NSV + N G A +EF + Q+ +D
Sbjct: 126 IKMEDVSSFFSQYAKVNSVRLPPNIADKRRFCGTALVEFSSEQDTQD 172
>At1g53650.1 68414.m06105 RNA-binding protein, putative similar to
RNA-binding protein GB:AAA86641 GI:1174153 from
[Arabidopsis thaliana]
Length = 314
Score = 28.3 bits (60), Expect = 7.8
Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 3/65 (4%)
Frame = +3
Query: 225 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPG---FAFIEFENLQEAEDACSAMNG 395
VYV + + + +E L F G++ + +P FAF+EF + Q A A S + G
Sbjct: 130 VYVSDIDQSVTEEGLAGLFSSCGQVVDCRICGDPNSVLRFAFVEFSDDQGARSALS-LGG 188
Query: 396 TEMLG 410
T M+G
Sbjct: 189 T-MIG 192
>At1g10320.1 68414.m01162 U2 snRNP auxiliary factor-related similar
to U2 small nuclear ribonucleoprotein auxiliary factor
35 kD subunit related protein 1 (sp|Q15695)
Length = 757
Score = 28.3 bits (60), Expect = 7.8
Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 4/60 (6%)
Frame = +3
Query: 261 EDLEREFDKYGKLNSVWVALNP----PGFAFIEFENLQEAEDACSAMNGTEMLGATLKVE 428
ED+ EF KYG+L + V N G ++ + +L+ A A ++NG G + E
Sbjct: 309 EDVHTEFLKYGELVNFKVCRNGSFHLKGNVYVHYRSLESAILAYQSINGRYFAGKQVNCE 368
>At1g05510.1 68414.m00563 expressed protein
Length = 241
Score = 28.3 bits (60), Expect = 7.8
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = +3
Query: 216 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVW 311
G +++ G+ E I+++DLE+ YGK+ W
Sbjct: 121 GGFLFMPGVPEAIQRQDLEKVAKTYGKVYHFW 152
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,410,411
Number of Sequences: 28952
Number of extensions: 190204
Number of successful extensions: 827
Number of sequences better than 10.0: 177
Number of HSP's better than 10.0 without gapping: 705
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 785
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2256303936
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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