Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_M05
         (985 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC17D11.05 |tif32||translation initiation factor eIF3a|Schizos...    66   5e-12
SPBC28F2.08c |||HRD ubiquitin ligase complex subunit |Schizosacc...    27   4.1  
SPAC4G9.09c |arg11||N-acetyl-gamma-glutamyl-phosphate reductase/...    26   7.1  

>SPBC17D11.05 |tif32||translation initiation factor
           eIF3a|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 932

 Score = 66.5 bits (155), Expect = 5e-12
 Identities = 46/154 (29%), Positives = 70/154 (45%)
 Frame = +2

Query: 224 RPENALKRANEFMDLDKPARALDTLQEVFRNXKWAYNWSESVLQPIXFXYLELCVDLRKS 403
           +PEN L+ A+E + LD+ + AL +L E     K + N     L+PI   ++ELCV LRK 
Sbjct: 7   KPENVLRLADELIALDQHSSALQSLHETIV-LKRSRNAQGFSLEPIMMRFIELCVHLRKG 65

Query: 404 HVAXEGLFQYRNXFQSVNVGSLGAGYKRLSPYGRGTXETAXVFIDPXXHRPLMXXITLXT 583
            +A EGL+ Y+N  Q+ +V ++    K          + A    D      +       T
Sbjct: 66  KIAKEGLYTYKNAVQNTSVTAIENVVKHFIELANKRVQEAQEKADKISVEYVDDLEATET 125

Query: 584 PEXILPECRCXGXXXPDRIGXNXYSRPWVKSLWE 685
           PE I+      G     R      + PW+K LW+
Sbjct: 126 PESIMMSL-VSGDLSKSRTDRALVT-PWLKFLWD 157


>SPBC28F2.08c |||HRD ubiquitin ligase complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 713

 Score = 27.1 bits (57), Expect = 4.1
 Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = -1

Query: 244 FKGIFRSL-TVSRHFLYITFYFINTISSILFRFRRENRIPPAP 119
           F  I+R L  V+  FL +  YFI  I  IL     ++++PP P
Sbjct: 584 FSNIYRILGKVTYKFLKLVQYFIINIFDILSPAGPDSQLPPEP 626


>SPAC4G9.09c |arg11||N-acetyl-gamma-glutamyl-phosphate
           reductase/acetylglutamate kinase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 885

 Score = 26.2 bits (55), Expect = 7.1
 Identities = 13/58 (22%), Positives = 25/58 (43%)
 Frame = +3

Query: 228 RKMPLNGPMSSWIWTNQQGP*TPYRKFSVTXNGPTTGPNLSYNQSCSNTWNFALIYVN 401
           +K+   G + +W+     G   PY     + NG +   +LS +     +W + L  +N
Sbjct: 630 KKLEEEGAVDAWVMALPNGVCKPYVDALTSANGKSVIVDLSADYRFEPSWQYGLPELN 687


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,376,254
Number of Sequences: 5004
Number of extensions: 61781
Number of successful extensions: 141
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 507285244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)