Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_M05
         (985 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_3226| Best HMM Match : RNA_pol_Rpb2_1 (HMM E-Value=0.021)           75   1e-13
SB_46288| Best HMM Match : Troponin (HMM E-Value=3.7)                  35   0.088
SB_29252| Best HMM Match : Cytadhesin_P30 (HMM E-Value=1.4)            31   1.4  
SB_45447| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.4  
SB_31815| Best HMM Match : Lipase_GDSL (HMM E-Value=0.0024)            29   4.4  
SB_9903| Best HMM Match : Lipase_GDSL (HMM E-Value=0.0051)             29   4.4  

>SB_3226| Best HMM Match : RNA_pol_Rpb2_1 (HMM E-Value=0.021)
          Length = 1217

 Score = 74.5 bits (175), Expect = 1e-13
 Identities = 35/71 (49%), Positives = 47/71 (66%)
 Frame = +2

Query: 257 FMDLDKPARALDTLQEVFRNXKWAYNWSESVLQPIXFXYLELCVDLRKSHVAXEGLFQYR 436
           F+++ K   ALD L +V ++ K    W   + +PI F YLELCVDLR+SHVA EGL+QY+
Sbjct: 2   FIEVGKKEPALDALYDVIKSKKHR-TWQNKIHEPILFKYLELCVDLRRSHVAKEGLYQYK 60

Query: 437 NXFQSVNVGSL 469
              Q VN+ SL
Sbjct: 61  LICQQVNIASL 71


>SB_46288| Best HMM Match : Troponin (HMM E-Value=3.7)
          Length = 152

 Score = 35.1 bits (77), Expect = 0.088
 Identities = 23/75 (30%), Positives = 36/75 (48%)
 Frame = +2

Query: 185 VESDIKKMARYGQRPENALKRANEFMDLDKPARALDTLQEVFRNXKWAYNWSESVLQPIX 364
           VE+D K++ +     E  LK   E  +LD   +A D +QE  ++   A N +   LQ I 
Sbjct: 78  VENDAKELQKNMDEEEQELKTEEE-KELDDEKQARDKIQEAIKHNSEAMNKARKFLQDIE 136

Query: 365 FXYLELCVDLRKSHV 409
               +   D+ KS+V
Sbjct: 137 EGIEKFHQDIEKSNV 151


>SB_29252| Best HMM Match : Cytadhesin_P30 (HMM E-Value=1.4)
          Length = 1439

 Score = 31.1 bits (67), Expect = 1.4
 Identities = 19/67 (28%), Positives = 26/67 (38%)
 Frame = +3

Query: 771 GLPTPVXXXPRNXXNPESLVAPLXTTPXGSIFCXTXXXVTPXNPYPLSKPXXPHTXSXLN 950
           G+PTPV   P +   P S V      P  S+F  +    TP    P + P      S   
Sbjct: 413 GVPTPVAAPPPSVFAPSSGVPTPVAAPPPSVFASSSGVPTPVTAPPPAPPPSVFAPSSGV 472

Query: 951 PSTXLSP 971
           P+   +P
Sbjct: 473 PTPVAAP 479


>SB_45447| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1200

 Score = 29.5 bits (63), Expect = 4.4
 Identities = 25/76 (32%), Positives = 32/76 (42%), Gaps = 4/76 (5%)
 Frame = +2

Query: 221 QRPENALKRANEFMDLDKPARALDTLQEVFRNXKWA----YNWSESVLQPIXFXYLELCV 388
           QRP         F  L  P RALD L E F+    A     N+ E +L+ + F  L L +
Sbjct: 547 QRPPWNSSYNEAFPTLPPPFRALDALAEYFKRQGPANGRCNNYEEDILEELEFEILRLSL 606

Query: 389 DLRKSHVAXEGLFQYR 436
              K  V  +G F  R
Sbjct: 607 ---KGDVIIQGDFNAR 619


>SB_31815| Best HMM Match : Lipase_GDSL (HMM E-Value=0.0024)
          Length = 1163

 Score = 29.5 bits (63), Expect = 4.4
 Identities = 25/76 (32%), Positives = 32/76 (42%), Gaps = 4/76 (5%)
 Frame = +2

Query: 221 QRPENALKRANEFMDLDKPARALDTLQEVFRNXKWA----YNWSESVLQPIXFXYLELCV 388
           QRP         F  L  P RALD L E F+    A     N+ E +L+ + F  L L +
Sbjct: 670 QRPPWNSSYNEAFPTLPPPFRALDALAEYFKRQGPANGRCNNYEEDILEELEFEILRLSL 729

Query: 389 DLRKSHVAXEGLFQYR 436
              K  V  +G F  R
Sbjct: 730 ---KGDVIIQGDFNAR 742


>SB_9903| Best HMM Match : Lipase_GDSL (HMM E-Value=0.0051)
          Length = 891

 Score = 29.5 bits (63), Expect = 4.4
 Identities = 25/76 (32%), Positives = 32/76 (42%), Gaps = 4/76 (5%)
 Frame = +2

Query: 221 QRPENALKRANEFMDLDKPARALDTLQEVFRNXKWA----YNWSESVLQPIXFXYLELCV 388
           QRP         F  L  P RALD L E F+    A     N+ E +L+ + F  L L +
Sbjct: 498 QRPPWNSSYNEAFPTLPPPFRALDALAEYFKRQGPANGRCNNYEEDILEELEFEILRLSL 557

Query: 389 DLRKSHVAXEGLFQYR 436
              K  V  +G F  R
Sbjct: 558 ---KGDVIIQGDFNAR 570


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,288,371
Number of Sequences: 59808
Number of extensions: 495049
Number of successful extensions: 954
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 874
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 953
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2919714245
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)