Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_M05
         (985 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g11420.1 68417.m01840 eukaryotic translation initiation facto...    72   7e-13
At3g26780.1 68416.m03350 phosphoglycerate/bisphosphoglycerate mu...    29   3.6  
At3g56590.1 68416.m06293 hydroxyproline-rich glycoprotein family...    29   4.7  

>At4g11420.1 68417.m01840 eukaryotic translation initiation factor 3
           subunit 10 / eIF-3 theta / eIF3a (TIF3A1) identical to
           eukaryotic translation initiation factor 3 subunit 10
           (eIF-3 theta) (Eukaryotic translation initiation factor
           3 large subunit) (eIF3a) (p114). [Arabidopsis thaliana]
           SWISS-PROT:Q9LD55
          Length = 987

 Score = 71.7 bits (168), Expect = 7e-13
 Identities = 51/160 (31%), Positives = 72/160 (45%)
 Frame = +2

Query: 206 MARYGQRPENALKRANEFMDLDKPARALDTLQEVFRNXKWAYNWSESVLQPIXFXYLELC 385
           MA +  +PENALKRA+E +++ +   AL  L ++  + ++   W +  L+ I F YL+LC
Sbjct: 1   MANFA-KPENALKRADELINVGQKQDALQALHDLITSKRYRA-WQKP-LEKIMFKYLDLC 57

Query: 386 VDLRKSHVAXEGLFQYRNXFQSVNVGSLGAGYKRLSPYGRGTXETAXVFIDPXXHRPLMX 565
           VDL++   A +GL QYR   Q VNV SL    K          E A    D       + 
Sbjct: 58  VDLKRGRFAKDGLIQYRIVCQQVNVSSLEEVIKHFLHLATDKAEQARSQADALEEALDVD 117

Query: 566 XITLXTPEXILPECRCXGXXXPDRIGXNXYSRPWVKSLWE 685
            +        L      G    DR      + PW K LWE
Sbjct: 118 DLEADRKPEDLQLSIVSGEKGKDRSDRELVT-PWFKFLWE 156


>At3g26780.1 68416.m03350 phosphoglycerate/bisphosphoglycerate
           mutase family protein similar to X4 protein GI:21386798,
           Y4 protein GI:21386800 from  [Silene dioica]; contains
           Pfam profiles PF00300: phosphoglycerate mutase family,
           PF01535: PPR repeat
          Length = 1053

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
 Frame = +2

Query: 683 EILXAHAXAAP-SVRXXXVGXPRIHAXCXPWPSNSCXXXPPQP 808
           E+L  HA A+P S +   +G PR+      W   +    PPQP
Sbjct: 51  EMLPCHASASPLSPQLSSLGTPRLGPSIKVWDPYNVLSPPPQP 93


>At3g56590.1 68416.m06293 hydroxyproline-rich glycoprotein family
           protein 
          Length = 477

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 17/45 (37%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
 Frame = +2

Query: 797 PPQPXESRKPCG-STXDHTXWXHILPXLPXRHTGQPLPTFKTXXP 928
           PP P E R+P G S  +H    H  P  P  H  QP P      P
Sbjct: 377 PPCPYEQRRPKGNSALNH----HTAPPTPAPHRSQPHPPAPNPAP 417


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,218,685
Number of Sequences: 28952
Number of extensions: 338196
Number of successful extensions: 663
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 648
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 662
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2392460208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)