Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP01_F_M03
(945 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3C7.11c |cnx1|cal1, cal1|calnexin |Schizosaccharomyces pombe... 46 8e-06
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 40 7e-04
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 38 0.002
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 37 0.004
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr... 37 0.005
SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam... 34 0.034
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 33 0.077
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 32 0.14
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 31 0.24
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 31 0.24
SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 30 0.55
SPAC2F3.14c |||conserved fungal protein|Schizosaccharomyces pomb... 29 0.72
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 27 1.0
SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex p... 28 1.7
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces... 27 2.9
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 27 3.8
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1... 27 3.8
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch... 27 5.1
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc... 26 6.7
SPBP4H10.19c |||calreticulin/calnexin homolog|Schizosaccharomyce... 26 8.9
SPBC215.15 |sec13||COPII-coated vesicle component Sec13|Schizosa... 26 8.9
SPAC1687.21 ||SPAC222.01|phosphoglycerate mutase family |Schizos... 26 8.9
>SPAC3C7.11c |cnx1|cal1, cal1|calnexin |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 560
Score = 46.0 bits (104), Expect = 8e-06
Identities = 34/106 (32%), Positives = 49/106 (46%), Gaps = 7/106 (6%)
Frame = +1
Query: 343 KPFSNEGKPLVVQFTVKHEQDIDCGGGYLKVFXCKLEQKDMHGETPYEIMFGPEHLWSXN 522
+P + K LVVQ+ V E+ ++CGG YLK+ + +M Y IMFGP+
Sbjct: 109 EPINEPEKDLVVQYEVNPEEGLNCGGAYLKLL-AEPTHGEMSNSIDYRIMFGPDK--CGV 165
Query: 523 QDRTRXL---PXPG*EPLSSKNISACXDDVYPP----LYXLIVXPD 639
DR + P S K++ + + P LY LIV PD
Sbjct: 166 NDRVHFIFKHKNPLTGEYSEKHLDSRPASLLKPGITNLYTLIVKPD 211
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 39.5 bits (88), Expect = 7e-04
Identities = 23/69 (33%), Positives = 25/69 (36%), Gaps = 3/69 (4%)
Frame = +2
Query: 710 PXKSRPQPXXXGAPSTNXRXPLXXPXXPPPXXXX-PL--PXXXPXXPPGXPPXXPLXPPP 880
P S P P AP + P PPP P+ P P P PP P PPP
Sbjct: 145 PRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSLPSAVPPMPPKVPPP 204
Query: 881 PXXXPPXXN 907
P P N
Sbjct: 205 PLSQAPVAN 213
Score = 33.1 bits (72), Expect = 0.059
Identities = 17/56 (30%), Positives = 18/56 (32%)
Frame = +2
Query: 746 APSTNXRXPLXXPXXPPPXXXXPLPXXXPXXPPGXPPXXPLXPPPPXXXPPXXNXA 913
AP + P PP P P P P PP PP P PP A
Sbjct: 123 APPSAPAPPTPQSELRPPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPA 178
Score = 27.9 bits (59), Expect = 2.2
Identities = 10/20 (50%), Positives = 10/20 (50%)
Frame = +1
Query: 781 PXRPPPPXXPPPXXXXPXPP 840
P PPPP P P P PP
Sbjct: 3 PAPPPPPPAPAPAAAAPAPP 22
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 38.3 bits (85), Expect = 0.002
Identities = 22/70 (31%), Positives = 23/70 (32%)
Frame = +2
Query: 686 PXGTXGLXPXKSRPQPXXXGAPSTNXRXPLXXPXXPPPXXXXPLPXXXPXXPPGXPPXXP 865
P T P + P PS P P P PLP P PP PP P
Sbjct: 416 PVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPP-LPPAAP 474
Query: 866 LXPPPPXXXP 895
PP P P
Sbjct: 475 APPPAPAPAP 484
Score = 35.9 bits (79), Expect = 0.008
Identities = 16/50 (32%), Positives = 18/50 (36%)
Frame = +2
Query: 749 PSTNXRXPLXXPXXPPPXXXXPLPXXXPXXPPGXPPXXPLXPPPPXXXPP 898
PS P+ P PP P+ P P PP P P PP P
Sbjct: 433 PSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPPPAPAP 482
Score = 34.3 bits (75), Expect = 0.025
Identities = 20/62 (32%), Positives = 22/62 (35%)
Frame = +2
Query: 710 PXKSRPQPXXXGAPSTNXRXPLXXPXXPPPXXXXPLPXXXPXXPPGXPPXXPLXPPPPXX 889
P +S P G S P+ P PP LP P PP P P PP P
Sbjct: 396 PGRSAPALPPLGNASRTSTPPVPTPPSLPPSAPPSLP---PSAPPSLPMGAPAAPPLPPS 452
Query: 890 XP 895
P
Sbjct: 453 AP 454
Score = 27.9 bits (59), Expect = 2.2
Identities = 13/33 (39%), Positives = 13/33 (39%)
Frame = +1
Query: 790 PPPPXXPPPXXXXPXPPSRPXXPXPPXPPXXXP 888
PPPP P PP P PP PP P
Sbjct: 339 PPPPPRSNAAGSIPLPPQGRSAP-PPPPPRSAP 370
Score = 27.5 bits (58), Expect = 2.9
Identities = 14/42 (33%), Positives = 15/42 (35%)
Frame = +1
Query: 763 PXTTXXPXRPPPPXXPPPXXXXPXPPSRPXXPXPPXPPXXXP 888
P P PP P P P PP+ P P P P P
Sbjct: 448 PLPPSAPIAPPLPAGMPAAP--PLPPAAPAPPPAPAPAPAAP 487
Score = 27.1 bits (57), Expect = 3.8
Identities = 10/25 (40%), Positives = 11/25 (44%)
Frame = +1
Query: 793 PPPXXPPPXXXXPXPPSRPXXPXPP 867
PPP PP PP+ P P P
Sbjct: 253 PPPIPPPSNGTVSSPPNSPPRPIAP 277
Score = 26.6 bits (56), Expect = 5.1
Identities = 15/35 (42%), Positives = 15/35 (42%), Gaps = 5/35 (14%)
Frame = +1
Query: 787 RPPPPXXPPPXXXXPXPP-----SRPXXPXPPXPP 876
RPPPP PP PP S P PP PP
Sbjct: 310 RPPPPP-PPSRRNRGKPPIGNGSSNSSLPPPPPPP 343
Score = 26.6 bits (56), Expect = 5.1
Identities = 13/34 (38%), Positives = 13/34 (38%), Gaps = 1/34 (2%)
Frame = +1
Query: 790 PPPPXXPPPXXXXPXP-PSRPXXPXPPXPPXXXP 888
PPPP P P P S PP PP P
Sbjct: 363 PPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIP 396
Score = 26.2 bits (55), Expect = 6.7
Identities = 19/65 (29%), Positives = 20/65 (30%), Gaps = 2/65 (3%)
Frame = +2
Query: 710 PXKSRPQPXXXGAPSTNXRXPLXXPXXPPPXXXXPLPXXXPXXPP--GXPPXXPLXPPPP 883
P + P PS P P P PLP P PP P P PP
Sbjct: 416 PVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAP--PLPPSAPIAPPLPAGMPAAPPLPPAA 473
Query: 884 XXXPP 898
PP
Sbjct: 474 PAPPP 478
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 37.1 bits (82), Expect = 0.004
Identities = 17/43 (39%), Positives = 17/43 (39%), Gaps = 1/43 (2%)
Frame = +1
Query: 763 PXTTXXPXRPPPPXX-PPPXXXXPXPPSRPXXPXPPXPPXXXP 888
P P PPPP PPP P P P P PP P P
Sbjct: 1699 PPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAP 1741
Score = 31.9 bits (69), Expect = 0.14
Identities = 17/53 (32%), Positives = 19/53 (35%)
Frame = +2
Query: 749 PSTNXRXPLXXPXXPPPXXXXPLPXXXPXXPPGXPPXXPLXPPPPXXXPPXXN 907
P + + P PPP P P P P G PP P P P P N
Sbjct: 1694 PQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAG-PPSAPPPPLPASSAPSVPN 1745
Score = 30.3 bits (65), Expect = 0.41
Identities = 16/42 (38%), Positives = 17/42 (40%)
Frame = +1
Query: 763 PXTTXXPXRPPPPXXPPPXXXXPXPPSRPXXPXPPXPPXXXP 888
P + P P PPP P PPS P P P PP P
Sbjct: 1694 PQSAAPPQMSAPTPPPPPMS-VPPPPSAP--PMPAGPPSAPP 1732
Score = 29.5 bits (63), Expect = 0.72
Identities = 13/43 (30%), Positives = 15/43 (34%)
Frame = +2
Query: 770 PLXXPXXPPPXXXXPLPXXXPXXPPGXPPXXPLXPPPPXXXPP 898
P+ PP P P P P P P+ PP PP
Sbjct: 1691 PVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPP 1733
Score = 26.2 bits (55), Expect = 6.7
Identities = 11/33 (33%), Positives = 12/33 (36%)
Frame = +1
Query: 790 PPPPXXPPPXXXXPXPPSRPXXPXPPXPPXXXP 888
P P PP P + P PP PP P
Sbjct: 1683 PAHPVSTPPVRPQSAAPPQMSAPTPPPPPMSVP 1715
>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 305
Score = 36.7 bits (81), Expect = 0.005
Identities = 22/59 (37%), Positives = 23/59 (38%), Gaps = 1/59 (1%)
Frame = -1
Query: 894 GXXXGGGGXRGXXGGWPGGXXGXXXGRGXXXXGG-GXXGXXSGXRXXVEGAPSXXG*GR 721
G G GG RG GG+ GG G GRG GG G G R G GR
Sbjct: 6 GSRGGRGGSRGGRGGFNGGRGGFGGGRGGARGGGRGGARGGRGGRGGARGGRGGSSGGR 64
Score = 34.3 bits (75), Expect = 0.025
Identities = 19/46 (41%), Positives = 20/46 (43%), Gaps = 1/46 (2%)
Frame = -1
Query: 897 GGXXXGGGGXRGXXGGWPGGXXGXXXGRGXXXXG-GGXXGXXSGXR 763
GG GGG G GG GG G GRG G GG G G +
Sbjct: 23 GGRGGFGGGRGGARGGGRGGARGGRGGRGGARGGRGGSSGGRGGAK 68
>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
Mam3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1082
Score = 33.9 bits (74), Expect = 0.034
Identities = 25/72 (34%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Frame = -3
Query: 319 NLASSEVFKPLSSSGSXKNFPAVNLNFPNSFPGCSLYTQLLSHE-SSGNFSSKNTSQFIE 143
N SSE F S+S S P VN + S + ++ L S + S+ NF+S ++S +
Sbjct: 475 NYTSSEAF---STSSSLVVIPPVNSSLVTSSTSFTKFSSLSSSQLSTENFTSASSSLSLT 531
Query: 142 DNASKLTTTSTT 107
+ S L+T STT
Sbjct: 532 NAKSSLSTPSTT 543
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 32.7 bits (71), Expect = 0.077
Identities = 16/42 (38%), Positives = 17/42 (40%)
Frame = +2
Query: 773 LXXPXXPPPXXXXPLPXXXPXXPPGXPPXXPLXPPPPXXXPP 898
L P PPP P P P P PP + PPP PP
Sbjct: 729 LKSPPPPPPAVIVPTPAPAPIPVP--PPAPIMGGPPPPPPPP 768
Score = 29.5 bits (63), Expect = 0.72
Identities = 18/56 (32%), Positives = 19/56 (33%)
Frame = +2
Query: 716 KSRPQPXXXGAPSTNXRXPLXXPXXPPPXXXXPLPXXXPXXPPGXPPXXPLXPPPP 883
KS P P T P+ P P P P P PP P PPPP
Sbjct: 730 KSPPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPP--PPPP 783
Score = 28.7 bits (61), Expect = 1.3
Identities = 13/38 (34%), Positives = 13/38 (34%)
Frame = +1
Query: 763 PXTTXXPXRPPPPXXPPPXXXXPXPPSRPXXPXPPXPP 876
P P PP P P P P P PP PP
Sbjct: 744 PAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPP 781
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 31.9 bits (69), Expect = 0.14
Identities = 15/29 (51%), Positives = 16/29 (55%)
Frame = +1
Query: 781 PXRPPPPXXPPPXXXXPXPPSRPXXPXPP 867
P PPPP PPP PPS+P P PP
Sbjct: 6 PGNPPPPP-PPPGF---EPPSQPPPPPPP 30
Score = 25.8 bits (54), Expect = 8.9
Identities = 11/27 (40%), Positives = 11/27 (40%)
Frame = +2
Query: 815 LPXXXPXXPPGXPPXXPLXPPPPXXXP 895
LP P PP P P PPP P
Sbjct: 4 LPPGNPPPPPPPPGFEPPSQPPPPPPP 30
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 31.1 bits (67), Expect = 0.24
Identities = 14/29 (48%), Positives = 14/29 (48%)
Frame = -1
Query: 897 GGXXXGGGGXRGXXGGWPGGXXGXXXGRG 811
GG G GG G GG PGG G G G
Sbjct: 241 GGGPGGFGGGLGGFGGGPGGFGGGPGGHG 269
Score = 30.7 bits (66), Expect = 0.31
Identities = 19/44 (43%), Positives = 19/44 (43%), Gaps = 1/44 (2%)
Frame = -1
Query: 897 GGXXXGGGGXRGXXGGWPGGXXGXXXGRGXXXXG-GGXXGXXSG 769
GG GGG G GG PGG G G G G GG G G
Sbjct: 221 GGHGGFGGGPGGFEGG-PGGFGGGPGGFGGGLGGFGGGPGGFGG 263
Score = 27.1 bits (57), Expect = 3.8
Identities = 23/70 (32%), Positives = 24/70 (34%), Gaps = 4/70 (5%)
Frame = -1
Query: 897 GGXXXGGGGXRGXXGGWPG----GXXGXXXGRGXXXXGGGXXGXXSGXRXXVEGAPSXXG 730
GG G GG GG+ G G G G G GGG G G G P G
Sbjct: 191 GGFGGGSGGPPPGPGGFGGFGGFGGEGHHHG-GHGGFGGGPGGFEGGP-GGFGGGPGGFG 248
Query: 729 *GRDFXGXSP 700
G G P
Sbjct: 249 GGLGGFGGGP 258
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 31.1 bits (67), Expect = 0.24
Identities = 15/40 (37%), Positives = 16/40 (40%), Gaps = 1/40 (2%)
Frame = +2
Query: 782 PXXPPPXXXXPLPXXXPXXPPGXPP-XXPLXPPPPXXXPP 898
P PPP P+P PP PP P P P PP
Sbjct: 1189 PPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLPP 1228
Score = 30.7 bits (66), Expect = 0.31
Identities = 18/59 (30%), Positives = 19/59 (32%), Gaps = 1/59 (1%)
Frame = +2
Query: 725 PQPXXXGAPSTNXRXPLXXPXXPPPXXXXPLPXXXPXXPPGXPP-XXPLXPPPPXXXPP 898
P P GAP P P P+P PP PP P P P PP
Sbjct: 1151 PVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPP 1209
Score = 29.5 bits (63), Expect = 0.72
Identities = 18/59 (30%), Positives = 21/59 (35%), Gaps = 1/59 (1%)
Frame = +2
Query: 725 PQPXXXGAPSTNXRXPLXXPXXPPPXXXXPLPXXXPXXPP-GXPPXXPLXPPPPXXXPP 898
P P GAP + + P P P P+P PP P P P P PP
Sbjct: 1113 PVPAPSGAPPV-PKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPP 1170
Score = 28.7 bits (61), Expect = 1.3
Identities = 18/60 (30%), Positives = 21/60 (35%), Gaps = 2/60 (3%)
Frame = +2
Query: 725 PQPXXXGAPSTNXRXPLXXPXXPPPXXXXPLPXXXPXXPPGXPP--XXPLXPPPPXXXPP 898
P P GAP + + P P P P+P PP P P P P PP
Sbjct: 1132 PVPVPSGAPPV-PKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPP 1190
Score = 27.5 bits (58), Expect = 2.9
Identities = 14/44 (31%), Positives = 16/44 (36%), Gaps = 1/44 (2%)
Frame = +2
Query: 770 PLXXPXXPPPXXXXPLPXXXPXXPPGXPPXXPLXP-PPPXXXPP 898
P P P P P+P PP P + P P P PP
Sbjct: 1079 PSGAPPVPAPSGIPPVPKPSVAAPPVPKPSVAVPPVPAPSGAPP 1122
Score = 27.1 bits (57), Expect = 3.8
Identities = 15/52 (28%), Positives = 18/52 (34%)
Frame = +2
Query: 725 PQPXXXGAPSTNXRXPLXXPXXPPPXXXXPLPXXXPXXPPGXPPXXPLXPPP 880
P P AP + + P PPP P+P PP P P P
Sbjct: 1190 PVPPPSEAPPV-PKPSVGVPPVPPPSTAPPVPTPSAGLPPVPVPTAKAPPVP 1240
Score = 25.8 bits (54), Expect = 8.9
Identities = 16/59 (27%), Positives = 19/59 (32%), Gaps = 1/59 (1%)
Frame = +2
Query: 725 PQPXXXGAPSTNXRXPLXXPXXPPPXXXXPLPXXXPXXPP-GXPPXXPLXPPPPXXXPP 898
P P A + + P P P P+P PP P P P P PP
Sbjct: 1093 PVPKPSVAAPPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPP 1151
>SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 821
Score = 29.9 bits (64), Expect = 0.55
Identities = 22/67 (32%), Positives = 27/67 (40%), Gaps = 4/67 (5%)
Frame = -3
Query: 250 NLNFPNSFPGCSLYTQLLSHESSGNFSSKNTSQFIEDNASKLTT----TSTTAFIFDSQY 83
N N F + + S +SGNFS T Q DN S +T ST F S
Sbjct: 575 NSNSQRPFSTVPSESNVFSRNASGNFSMSQTHQPTTDNTSSFSTQPGRLSTGLHHFPSDR 634
Query: 82 HLLQQKT 62
LL +T
Sbjct: 635 DLLSNQT 641
>SPAC2F3.14c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 331
Score = 29.5 bits (63), Expect = 0.72
Identities = 13/36 (36%), Positives = 13/36 (36%)
Frame = +1
Query: 781 PXRPPPPXXPPPXXXXPXPPSRPXXPXPPXPPXXXP 888
P PP P P P P P P P P P P
Sbjct: 104 PREPPLPNEPVPEEPLPGEPPLPDEPVPEEPLPGEP 139
Score = 27.1 bits (57), Expect = 3.8
Identities = 11/28 (39%), Positives = 11/28 (39%)
Frame = +1
Query: 781 PXRPPPPXXPPPXXXXPXPPSRPXXPXP 864
P PP P P P P P P P P
Sbjct: 120 PGEPPLPDEPVPEEPLPGEPPLPNEPVP 147
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 27.1 bits (57), Expect = 3.8
Identities = 13/30 (43%), Positives = 13/30 (43%), Gaps = 2/30 (6%)
Frame = +1
Query: 793 PPPXXPPPXXXXPXP--PSRPXXPXPPXPP 876
PPP PP P PS P PP PP
Sbjct: 167 PPPSFQPPSAAAPATSLPSDYNPPPPPPPP 196
Score = 25.0 bits (52), Expect(2) = 1.0
Identities = 12/28 (42%), Positives = 12/28 (42%), Gaps = 3/28 (10%)
Frame = +2
Query: 782 PXXPP---PXXXXPLPXXXPXXPPGXPP 856
P PP P PLP P PP PP
Sbjct: 221 PEIPPTYTPKQADPLPAPPPPPPPTLPP 248
Score = 22.2 bits (45), Expect(2) = 1.0
Identities = 9/24 (37%), Positives = 11/24 (45%)
Frame = +2
Query: 728 QPXXXGAPSTNXRXPLXXPXXPPP 799
QP AP+T+ P PPP
Sbjct: 172 QPPSAAAPATSLPSDYNPPPPPPP 195
>SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex
protein Gar1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 194
Score = 28.3 bits (60), Expect = 1.7
Identities = 15/43 (34%), Positives = 16/43 (37%)
Frame = -1
Query: 897 GGXXXGGGGXRGXXGGWPGGXXGXXXGRGXXXXGGGXXGXXSG 769
GG GG G GG+ G G G GGG G G
Sbjct: 138 GGRGGFRGGRGGSRGGFGGNSRGGFGGGSRGGFGGGSRGGSRG 180
Score = 25.8 bits (54), Expect = 8.9
Identities = 11/23 (47%), Positives = 12/23 (52%)
Frame = -1
Query: 882 GGGGXRGXXGGWPGGXXGXXXGR 814
GGG G GG+ GG G GR
Sbjct: 171 GGGSRGGSRGGFRGGSRGGFRGR 193
>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 713
Score = 27.5 bits (58), Expect = 2.9
Identities = 11/24 (45%), Positives = 11/24 (45%)
Frame = +1
Query: 793 PPPXXPPPXXXXPXPPSRPXXPXP 864
PPP PPP P SRP P
Sbjct: 370 PPPPPPPPELLNHSPKSRPLGDKP 393
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 27.1 bits (57), Expect = 3.8
Identities = 17/39 (43%), Positives = 18/39 (46%)
Frame = -1
Query: 879 GGGXRGXXGGWPGGXXGXXXGRGXXXXGGGXXGXXSGXR 763
GGG RG GG+ G G GRG GGG G R
Sbjct: 446 GGGSRGGRGGF--GGRGGFGGRG--GFGGGRGRGRGGAR 480
>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 857
Score = 27.1 bits (57), Expect = 3.8
Identities = 14/40 (35%), Positives = 14/40 (35%), Gaps = 2/40 (5%)
Frame = +1
Query: 763 PXTTXXPXRPPPPXXP--PPXXXXPXPPSRPXXPXPPXPP 876
P P P PP P P P PP P P P P
Sbjct: 581 PVAPEVPSVPQPPVAPVVPEAPSVPQPPVAPVAPEVPSVP 620
>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
Y|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1002
Score = 26.6 bits (56), Expect = 5.1
Identities = 13/35 (37%), Positives = 13/35 (37%), Gaps = 2/35 (5%)
Frame = +1
Query: 790 PPPPXXPPPXXXXPXPP--SRPXXPXPPXPPXXXP 888
PPPP P P PP P PP P P
Sbjct: 208 PPPPMHHKPGEHMPPPPMHHEPGEHMPPPPMHHEP 242
Score = 26.6 bits (56), Expect = 5.1
Identities = 13/35 (37%), Positives = 13/35 (37%), Gaps = 2/35 (5%)
Frame = +1
Query: 790 PPPPXXPPPXXXXPXPP--SRPXXPXPPXPPXXXP 888
PPPP P P PP P PP P P
Sbjct: 221 PPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEP 255
Score = 26.6 bits (56), Expect = 5.1
Identities = 13/35 (37%), Positives = 13/35 (37%), Gaps = 2/35 (5%)
Frame = +1
Query: 790 PPPPXXPPPXXXXPXPP--SRPXXPXPPXPPXXXP 888
PPPP P P PP P PP P P
Sbjct: 234 PPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEP 268
Score = 26.6 bits (56), Expect = 5.1
Identities = 13/35 (37%), Positives = 13/35 (37%), Gaps = 2/35 (5%)
Frame = +1
Query: 790 PPPPXXPPPXXXXPXPP--SRPXXPXPPXPPXXXP 888
PPPP P P PP P PP P P
Sbjct: 247 PPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEP 281
Score = 26.6 bits (56), Expect = 5.1
Identities = 13/35 (37%), Positives = 13/35 (37%), Gaps = 2/35 (5%)
Frame = +1
Query: 790 PPPPXXPPPXXXXPXPP--SRPXXPXPPXPPXXXP 888
PPPP P P PP P PP P P
Sbjct: 260 PPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEP 294
Score = 26.6 bits (56), Expect = 5.1
Identities = 13/35 (37%), Positives = 13/35 (37%), Gaps = 2/35 (5%)
Frame = +1
Query: 790 PPPPXXPPPXXXXPXPP--SRPXXPXPPXPPXXXP 888
PPPP P P PP P PP P P
Sbjct: 273 PPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEP 307
Score = 26.6 bits (56), Expect = 5.1
Identities = 13/35 (37%), Positives = 13/35 (37%), Gaps = 2/35 (5%)
Frame = +1
Query: 790 PPPPXXPPPXXXXPXPP--SRPXXPXPPXPPXXXP 888
PPPP P P PP P PP P P
Sbjct: 286 PPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEP 320
Score = 26.6 bits (56), Expect = 5.1
Identities = 13/35 (37%), Positives = 13/35 (37%), Gaps = 2/35 (5%)
Frame = +1
Query: 790 PPPPXXPPPXXXXPXPP--SRPXXPXPPXPPXXXP 888
PPPP P P PP P PP P P
Sbjct: 299 PPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEP 333
Score = 25.8 bits (54), Expect = 8.9
Identities = 12/30 (40%), Positives = 12/30 (40%), Gaps = 2/30 (6%)
Frame = +1
Query: 790 PPPPXXPPPXXXXPXPP--SRPXXPXPPXP 873
PPPP P P PP P PP P
Sbjct: 312 PPPPMHHEPGEHMPPPPMHHEPGEHMPPPP 341
>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 587
Score = 26.2 bits (55), Expect = 6.7
Identities = 11/32 (34%), Positives = 12/32 (37%)
Frame = +1
Query: 781 PXRPPPPXXPPPXXXXPXPPSRPXXPXPPXPP 876
P PP P P P P+ P P PP
Sbjct: 527 PGMALPPGMPAPFPGYPAVPAMPGIPGATAPP 558
>SPBP4H10.19c |||calreticulin/calnexin homolog|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 381
Score = 25.8 bits (54), Expect = 8.9
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = +1
Query: 367 PLVVQFTVKHEQDIDCGGGYLKVFXCKLEQKDMHGETPYEIMFG 498
P+V+ F VK + CG Y+ + + K++ E P I FG
Sbjct: 103 PIVLSFQVKPTKPWTCGHAYVSLVH-QSNPKNVSKEPPSVIRFG 145
>SPBC215.15 |sec13||COPII-coated vesicle component
Sec13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 297
Score = 25.8 bits (54), Expect = 8.9
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = +3
Query: 168 EEKFPDDSWESNWVYS 215
EEKFPD +W +W S
Sbjct: 251 EEKFPDIAWRVSWSLS 266
>SPAC1687.21 ||SPAC222.01|phosphoglycerate mutase family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 209
Score = 25.8 bits (54), Expect = 8.9
Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Frame = -1
Query: 399 FMFD-SELDYQGFTLITERFELXGREHRTSHLQRFSNLCH 283
F FD S+L+ + T T E+ EH T H+ F + H
Sbjct: 159 FTFDKSKLESKIITFNTSITEIEVTEHGTGHIHTFGDASH 198
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,032,607
Number of Sequences: 5004
Number of extensions: 58381
Number of successful extensions: 447
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 293
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 481321826
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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