Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP01_F_M01
(943 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 30 0.54
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 30 0.54
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 30 0.54
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 29 1.3
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 27 2.9
SPAC2F7.16c |||phospholipase D |Schizosaccharomyces pombe|chr 1|... 26 6.7
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 26 8.8
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 29.9 bits (64), Expect = 0.54
Identities = 16/51 (31%), Positives = 18/51 (35%)
Frame = +3
Query: 714 PPPXXXPPXPPSXXXPXPXXXXPPXXLLXPXXPXXLXPLFXXGPPPPXXXP 866
PP PP P S P PP + P P P+ PP P P
Sbjct: 124 PPSAPAPPTPQSELRPPTSA--PPRPSIPPPSPASAPPIPSKAPPIPSSLP 172
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 29.9 bits (64), Expect = 0.54
Identities = 27/111 (24%), Positives = 34/111 (30%), Gaps = 4/111 (3%)
Frame = +3
Query: 546 PTARVSTCPLLTRSIPTSSLTP---CLSKLMMKXXTXPXIXXXXXXPTIXXXXXXXXXXP 716
P R + P RS P++ P S+ + P P +
Sbjct: 355 PQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGRSAPALPPLGNASRTST 414
Query: 717 PPXXXPP-XPPSXXXPXPXXXXPPXXLLXPXXPXXLXPLFXXGPPPPXXXP 866
PP PP PPS P P + P P L P PP P P
Sbjct: 415 PPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAP-PLPPSAPIAPPLPAGMP 464
Score = 26.2 bits (55), Expect = 6.7
Identities = 14/49 (28%), Positives = 15/49 (30%), Gaps = 2/49 (4%)
Frame = +2
Query: 716 PPXXXPXXPPXXPXPXXXXXXPXXPPPSPXXPXXXXP--XXXXRXPXPP 856
P P PP P P PP P P P + P PP
Sbjct: 246 PSLSAPAPPPIPPPSNGTVSSPPNSPPRPIAPVSMNPAINSTSKPPLPP 294
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 29.9 bits (64), Expect = 0.54
Identities = 14/49 (28%), Positives = 14/49 (28%)
Frame = +1
Query: 715 PPXPPXXXXPXXPXPPXPXXPPXXXXSFXPXXXXXXXXXSXAXPXPPXP 861
PP PP P P P PP P P PP P
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPP 781
Score = 29.5 bits (63), Expect = 0.72
Identities = 17/52 (32%), Positives = 20/52 (38%), Gaps = 1/52 (1%)
Frame = +3
Query: 714 PPPXXXPPXPPSXXXPXPXXXXPPXXLLXPXXPXXLXP-LFXXGPPPPXXXP 866
PPP P P P P PP ++ P P + GPPPP P
Sbjct: 735 PPPAVIVPTPAPAPIPVP----PPAPIMGGPPPPPPPPGVAGAGPPPPPPPP 782
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 28.7 bits (61), Expect = 1.3
Identities = 19/75 (25%), Positives = 19/75 (25%)
Frame = +2
Query: 716 PPXXXPXXPPXXPXPXXXXXXPXXPPPSPXXPXXXXPXXXXRXPXPPXXPXXFXPPXXXX 895
PP P P P P P P PS P P PP P
Sbjct: 1150 PPVPAPSGAPPVPKPSVAA--PPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGV 1207
Query: 896 XPXPXXXXXPXXXXP 940
P P P P
Sbjct: 1208 PPVPPPSTAPPVPTP 1222
Score = 25.8 bits (54), Expect = 8.8
Identities = 17/56 (30%), Positives = 17/56 (30%)
Frame = +2
Query: 716 PPXXXPXXPPXXPXPXXXXXXPXXPPPSPXXPXXXXPXXXXRXPXPPXXPXXFXPP 883
PP P P P P P PPP P P P PP PP
Sbjct: 1041 PPVPIPTSTP--PVPKSSSGAPSAPPPVP-APSSEIPSIPAPSGAPPVPAPSGIPP 1093
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 27.5 bits (58), Expect = 2.9
Identities = 10/22 (45%), Positives = 10/22 (45%)
Frame = +1
Query: 715 PPXPPXXXXPXXPXPPXPXXPP 780
PP PP P PP P PP
Sbjct: 1707 PPPPPMSVPPPPSAPPMPAGPP 1728
>SPAC2F7.16c |||phospholipase D |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1369
Score = 26.2 bits (55), Expect = 6.7
Identities = 19/75 (25%), Positives = 33/75 (44%), Gaps = 1/75 (1%)
Frame = +2
Query: 389 TNELQMEEAXKXFRVLYYAKDFDVFMRTACWMREXINGGMFVYAFTAXC-FHRTDCKGLY 565
TNE ++ + F++ K + +R+ W+++ IN TA C HR D +
Sbjct: 470 TNE-KIRLSHHSFKIKNRQKVMKLSVRSGRWLQQFINSVQVAQGLTAWCEIHRFDS---F 525
Query: 566 LPAPYEIYPYFFVDA 610
P + + VDA
Sbjct: 526 APVRTNVAVQWMVDA 540
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 25.8 bits (54), Expect = 8.8
Identities = 9/18 (50%), Positives = 9/18 (50%)
Frame = +1
Query: 715 PPXPPXXXXPXXPXPPXP 768
PP PP P P PP P
Sbjct: 12 PPPPPGFEPPSQPPPPPP 29
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,519,474
Number of Sequences: 5004
Number of extensions: 44775
Number of successful extensions: 218
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 191
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 479324640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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