Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_L24
         (1001 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC7D4.07c |trx1||cytosolic thioredoxin Trx1 |Schizosaccharomyc...    64   3e-11
SPBC12D12.07c |trx2||mitochondrial thioredoxin Trx2|Schizosaccha...    56   1e-08
SPAC1F5.02 |||protein disulfide isomerase|Schizosaccharomyces po...    50   7e-07
SPAC17H9.14c |||protein disulfide isomerase|Schizosaccharomyces ...    46   6e-06
SPBC577.08c |txl1|trx3|thioredoxin-like I protein Txl1|Schizosac...    46   6e-06
SPBC26H8.06 |grx4||glutaredoxin Grx4|Schizosaccharomyces pombe|c...    45   1e-05
SPAC13F5.05 |||thioredoxin family protein|Schizosaccharomyces po...    31   0.19 
SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha...    29   1.0  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    29   1.4  
SPBC3D6.13c |||protein disulfide isomerase |Schizosaccharomyces ...    28   2.4  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    26   9.6  

>SPAC7D4.07c |trx1||cytosolic thioredoxin Trx1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 103

 Score = 64.1 bits (149), Expect = 3e-11
 Identities = 29/74 (39%), Positives = 46/74 (62%)
 Frame = +2

Query: 170 IKDSDDLKTRLAEAGDKLVVIDFMATWCGPCKMIGPKLDEIAXEMSDSIXXXXXXXXECX 349
           + DS + K+ + +  DKLVV+DF ATWCGPCK I PK ++ +   SD+         +  
Sbjct: 5   VSDSSEFKSIVCQ--DKLVVVDFFATWCGPCKAIAPKFEQFSNTYSDA-TFIKVDVDQLS 61

Query: 350 DIASEYNINSMPTF 391
           +IA+E  +++MP+F
Sbjct: 62  EIAAEAGVHAMPSF 75


>SPBC12D12.07c |trx2||mitochondrial thioredoxin
           Trx2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 121

 Score = 55.6 bits (128), Expect = 1e-08
 Identities = 31/95 (32%), Positives = 50/95 (52%)
 Frame = +2

Query: 170 IKDSDDLKTRLAEAGDKLVVIDFMATWCGPCKMIGPKLDEIAXEMSDSIXXXXXXXXECX 349
           ++   D  TR++   DK+ V+DF A WCGPCK + P L++++ E +           +  
Sbjct: 22  VESFGDYNTRIS--ADKVTVVDFYADWCGPCKYLKPFLEKLS-EQNQKASFIAVNADKFS 78

Query: 350 DIASEYNINSMPTFVFR*EWQETGRILLALTSTNS 454
           DIA +  + ++PT V   + QE  RI+ A   T S
Sbjct: 79  DIAQKNGVYALPTMVLFRKGQELDRIVGADVKTLS 113


>SPAC1F5.02 |||protein disulfide isomerase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 492

 Score = 49.6 bits (113), Expect = 7e-07
 Identities = 24/64 (37%), Positives = 35/64 (54%), Gaps = 2/64 (3%)
 Frame = +2

Query: 215 DKLVVIDFMATWCGPCKMIGPKLDEIAXEM-SDSIXXXXXXXXECXDIASEYNINSMPTF 391
           DK++++ F A WCG CK + P+ +  A E+  D I        E  D+ SEY+I   PT 
Sbjct: 39  DKVLMVKFYAPWCGHCKALAPEYESAADELEKDGISLVEVDCTEEGDLCSEYSIRGYPTL 98

Query: 392 -VFR 400
            VF+
Sbjct: 99  NVFK 102



 Score = 38.3 bits (85), Expect = 0.002
 Identities = 18/60 (30%), Positives = 30/60 (50%)
 Frame = +2

Query: 218 KLVVIDFMATWCGPCKMIGPKLDEIAXEMSDSIXXXXXXXXECXDIASEYNINSMPTFVF 397
           K V+++F A WCG CK + P  +++A E SD          +  +     +I+  PT +F
Sbjct: 374 KDVLVEFYAPWCGHCKNLAPTYEKLAEEYSDD-SNVVVAKIDATENDISVSISGFPTIMF 432


>SPAC17H9.14c |||protein disulfide isomerase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 359

 Score = 46.4 bits (105), Expect = 6e-06
 Identities = 24/94 (25%), Positives = 44/94 (46%), Gaps = 2/94 (2%)
 Frame = +2

Query: 122 VILFLVSIYLPKMSIHIKDSDDLKTRLAEAGDKLVVIDFMATWCGPCKMIGPKLDEIAXE 301
           VI  L ++      + ++  ++L+  +  A  K  +I+F ATWCG CK + P  +E+   
Sbjct: 9   VIFALFALVFASGVVELQSLNELENTI-RASKKGALIEFYATWCGHCKSLAPVYEELGAL 67

Query: 302 MSD--SIXXXXXXXXECXDIASEYNINSMPTFVF 397
             D   +           D+A +Y+I   PT ++
Sbjct: 68  FEDHNDVLIGKIDADTHSDVADKYHITGFPTLIW 101



 Score = 32.3 bits (70), Expect = 0.11
 Identities = 16/62 (25%), Positives = 27/62 (43%), Gaps = 2/62 (3%)
 Frame = +2

Query: 218 KLVVIDFMATWCGPCKMIGPKLDEIAXEMSD--SIXXXXXXXXECXDIASEYNINSMPTF 391
           K V+++F A WCG CK + P  + +     +  ++           DI   + + S PT 
Sbjct: 159 KDVLVEFYADWCGYCKRLAPTYETLGKVFKNEPNVEIVKINADVFADIGRLHEVASFPTI 218

Query: 392 VF 397
            F
Sbjct: 219 KF 220


>SPBC577.08c |txl1|trx3|thioredoxin-like I protein
           Txl1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 290

 Score = 46.4 bits (105), Expect = 6e-06
 Identities = 27/77 (35%), Positives = 36/77 (46%), Gaps = 1/77 (1%)
 Frame = +2

Query: 224 VVIDFMATWCGPCKMIGPKLDEIAXE-MSDSIXXXXXXXXECXDIASEYNINSMPTFVFR 400
           + +D  A WCGPCK I P   ++A +  S           E   IAS   + +MPTFVF 
Sbjct: 22  LAVDCYADWCGPCKAISPLFSQLASKYASPKFVFAKVNVDEQRQIASGLGVKAMPTFVF- 80

Query: 401 *EWQETGRILLALTSTN 451
               E G+ +  LT  N
Sbjct: 81  ---FENGKQIDMLTGAN 94


>SPBC26H8.06 |grx4||glutaredoxin Grx4|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 244

 Score = 45.2 bits (102), Expect = 1e-05
 Identities = 19/79 (24%), Positives = 41/79 (51%)
 Frame = +2

Query: 158 MSIHIKDSDDLKTRLAEAGDKLVVIDFMATWCGPCKMIGPKLDEIAXEMSDSIXXXXXXX 337
           MS+ I   +  +  L    +++++++F A W  PCK +    D+ A +  +++       
Sbjct: 1   MSVEITFVEQFQEILQNGKEQIILLNFYAPWAAPCKQMNQVFDQFAKDTKNAV-FLKIEA 59

Query: 338 XECXDIASEYNINSMPTFV 394
            +  DIA  +++N++P FV
Sbjct: 60  EKFSDIAESFDVNAVPLFV 78


>SPAC13F5.05 |||thioredoxin family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 363

 Score = 31.5 bits (68), Expect = 0.19
 Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 2/73 (2%)
 Frame = +2

Query: 176 DSDDLKTRLAEAGDKLVVIDFMATWCGPCKMIGPKLDEIAXEMSD--SIXXXXXXXXECX 349
           +S + +  +   G  LVV  F A WCG CK + P   ++A  +     +        +  
Sbjct: 37  NSKNFRKFVKAKGPSLVV--FYAPWCGYCKKLVPTYQKLASNLHSLLPVTAVDCDADQNR 94

Query: 350 DIASEYNINSMPT 388
            + S+Y +   PT
Sbjct: 95  AVCSQYQVQGFPT 107


>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
           Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 884

 Score = 29.1 bits (62), Expect = 1.0
 Identities = 15/38 (39%), Positives = 17/38 (44%)
 Frame = +2

Query: 653 PXXTPPPPXTXTXXPLL*SXPPPXPXPXSXXLPLXPAP 766
           P  TP PP T    P +   PPP P   S    + PAP
Sbjct: 725 PQVTPAPP-TPAPTPAVKHHPPPPPVRSSISPSMPPAP 761


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 28.7 bits (61), Expect = 1.4
 Identities = 13/35 (37%), Positives = 13/35 (37%)
 Frame = +2

Query: 665 PPPPXTXTXXPLL*SXPPPXPXPXSXXLPLXPAPP 769
           PPPP      P     P P P P     P  P PP
Sbjct: 734 PPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPP 768



 Score = 27.1 bits (57), Expect = 4.1
 Identities = 12/39 (30%), Positives = 14/39 (35%)
 Frame = +2

Query: 653 PXXTPPPPXTXTXXPLL*SXPPPXPXPXSXXLPLXPAPP 769
           P   P P       P++   PPP P P        P PP
Sbjct: 742 PTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPP 780


>SPBC3D6.13c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 726

 Score = 27.9 bits (59), Expect = 2.4
 Identities = 20/92 (21%), Positives = 42/92 (45%), Gaps = 3/92 (3%)
 Frame = +2

Query: 122 VILFLVSIYLPKMSIHIKDSDDLKTRLAEAGDKLVVIDFMATWCGPCKMIGPKLDEIAXE 301
           V+ F+  +      + + D+D L++ +++       I +    CG CK +GP  D +  +
Sbjct: 15  VVAFITMVQTLVSGVPLTDND-LESEVSKG---TWFIKYYLPSCGACKRLGPMWDNMVEK 70

Query: 302 MSDSIXXXXXXXXE--C-XDIASEYNINSMPT 388
             + +        E  C  +++S  NI ++PT
Sbjct: 71  AKEQVEGSNFHFGEVDCSKELSSCANIRAVPT 102


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 25.8 bits (54), Expect = 9.6
 Identities = 17/71 (23%), Positives = 20/71 (28%)
 Frame = +3

Query: 627  PSXMPTTIGPXXLXPPPPPXLXXHSSNPXXPXPXXXLXXXSPSXRXXXXXXXXXXXXPXX 806
            P  +P+T  P  +    PP     S  P  P P        PS                 
Sbjct: 1033 PIPVPSTAPPVPIPTSTPPVPKSSSGAPSAPPPVPAPSSEIPSIPAPSGAPPVPAPSGIP 1092

Query: 807  PPPXPXXRXPP 839
            P P P    PP
Sbjct: 1093 PVPKPSVAAPP 1103


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,467,906
Number of Sequences: 5004
Number of extensions: 41128
Number of successful extensions: 166
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 519268360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)