Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_L22
         (1018 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    28   1.8  
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    28   2.4  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   4.2  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    26   7.4  

>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 28.3 bits (60), Expect = 1.8
 Identities = 12/30 (40%), Positives = 12/30 (40%)
 Frame = +2

Query: 674  PPXHPAXXXPAPPPPXPXXPXPXXQTPXXP 763
            PP   A   PA PP  P  P P    P  P
Sbjct: 1715 PPPPSAPPMPAGPPSAPPPPLPASSAPSVP 1744



 Score = 26.6 bits (56), Expect = 5.6
 Identities = 11/26 (42%), Positives = 11/26 (42%)
 Frame = +2

Query: 677  PXHPAXXXPAPPPPXPXXPXPXXQTP 754
            P  PA    APPPP P    P    P
Sbjct: 1721 PPMPAGPPSAPPPPLPASSAPSVPNP 1746


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1841

 Score = 27.9 bits (59), Expect = 2.4
 Identities = 11/24 (45%), Positives = 11/24 (45%)
 Frame = +2

Query: 662 ARXTPPXHPAXXXPAPPPPXPXXP 733
           A  TPP H     P P PP P  P
Sbjct: 148 APVTPPVHSRSFDPLPKPPVPSVP 171


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 27.1 bits (57), Expect = 4.2
 Identities = 11/30 (36%), Positives = 11/30 (36%)
 Frame = +2

Query: 674 PPXHPAXXXPAPPPPXPXXPXPXXQTPXXP 763
           PP  P    P PPPP P         P  P
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAGAGPPPPPPP 781



 Score = 26.6 bits (56), Expect = 5.6
 Identities = 11/24 (45%), Positives = 11/24 (45%)
 Frame = +2

Query: 653 GGXARXTPPXHPAXXXPAPPPPXP 724
           GG     PP   A   P PPPP P
Sbjct: 759 GGPPPPPPPPGVAGAGPPPPPPPP 782


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 26.2 bits (55), Expect = 7.4
 Identities = 11/21 (52%), Positives = 11/21 (52%)
 Frame = +2

Query: 701 PAPPPPXPXXPXPXXQTPXXP 763
           PAPPPP P  P P    P  P
Sbjct: 3   PAPPPPPP-APAPAAAAPAPP 22



 Score = 25.8 bits (54), Expect = 9.8
 Identities = 10/28 (35%), Positives = 12/28 (42%)
 Frame = +2

Query: 671 TPPXHPAXXXPAPPPPXPXXPXPXXQTP 754
           +PP  P+     PP P    P P  Q P
Sbjct: 183 SPPSAPSLPSAVPPMPPKVPPPPLSQAP 210


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,312,846
Number of Sequences: 5004
Number of extensions: 10990
Number of successful extensions: 70
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 63
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 529254290
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)